Wall clock time and date at job start Tue Mar 31 2020 04:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31241 * 124.05614 * 2 1 4 4 N 1.27330 * 120.04034 * 180.33800 * 3 2 1 5 5 S 1.56634 * 109.74124 * 359.71864 * 4 3 2 6 6 C 1.38250 * 124.05881 * 179.83425 * 2 1 3 7 7 C 1.47172 * 128.47348 * 359.97438 * 6 2 1 8 8 O 1.21622 * 119.99611 * 359.70943 * 7 6 2 9 9 N 1.34772 * 119.99723 * 179.70071 * 7 6 2 10 10 C 1.46508 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47013 * 34.99886 * 10 9 7 12 12 C 1.52995 * 109.47008 * 275.00350 * 10 9 7 13 13 C 1.52995 * 109.47037 * 155.00339 * 10 9 7 14 14 C 1.53006 * 109.47234 * 294.99828 * 13 10 9 15 15 H 1.09001 * 109.47002 * 55.00002 * 14 13 10 16 16 C 1.52997 * 109.47164 * 175.00265 * 14 13 10 17 17 N 1.46504 * 109.46883 * 295.00505 * 14 13 10 18 18 C 1.36937 * 119.99777 * 154.99950 * 17 14 13 19 19 H 1.08003 * 119.99797 * 359.97438 * 18 17 14 20 20 C 1.38806 * 120.00162 * 179.97438 * 18 17 14 21 21 N 1.31627 * 119.99952 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00459 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46792 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47087 * 119.99807 * 22 20 18 25 25 H 1.48500 * 109.47309 * 240.00393 * 22 20 18 26 26 H 1.08999 * 109.47067 * 270.16307 * 1 2 3 27 27 H 1.08996 * 109.47274 * 30.16664 * 1 2 3 28 28 H 1.09004 * 109.47179 * 150.17101 * 1 2 3 29 29 H 0.96996 * 120.00674 * 0.02562 * 9 7 6 30 30 H 1.09000 * 109.47291 * 179.97438 * 12 10 9 31 31 H 1.09000 * 109.47521 * 299.99867 * 12 10 9 32 32 H 1.09000 * 109.47310 * 60.00100 * 12 10 9 33 33 H 1.09007 * 109.46945 * 175.00330 * 13 10 9 34 34 H 1.08995 * 109.47339 * 54.99628 * 13 10 9 35 35 H 1.09002 * 109.46777 * 180.02562 * 16 14 13 36 36 H 1.09000 * 109.47140 * 299.99948 * 16 14 13 37 37 H 1.09001 * 109.47375 * 59.99966 * 16 14 13 38 38 H 0.96990 * 120.00057 * 334.99453 * 17 14 13 39 39 H 0.96993 * 120.00181 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5121 0.9982 -0.0065 5 16 3.9366 -0.5096 -0.0063 6 6 2.2812 -1.1453 0.0033 7 6 1.8395 -2.5492 0.0079 8 8 0.6522 -2.8130 0.0145 9 7 2.7506 -3.5423 0.0046 10 6 2.3108 -4.9398 0.0086 11 1 1.3958 -5.0344 -0.5762 12 6 2.0450 -5.3867 1.4475 13 6 3.4017 -5.8194 -0.6053 14 6 3.5802 -5.4555 -2.0807 15 1 3.7814 -4.3879 -2.1698 16 6 4.7539 -6.2460 -2.6626 17 7 2.3569 -5.7850 -2.8164 18 6 2.0567 -5.1232 -3.9770 19 1 2.7216 -4.3581 -4.3498 20 6 0.8979 -5.4356 -4.6744 21 7 0.0873 -6.3678 -4.2197 22 14 0.4879 -4.5324 -6.2572 23 1 1.5519 -3.5386 -6.5498 24 1 0.4004 -5.5065 -7.3746 25 1 -0.8140 -3.8343 -6.1059 26 1 -0.3633 0.0029 1.0277 27 1 -0.3633 0.8884 -0.5164 28 1 -0.3634 -0.8915 -0.5112 29 1 3.6974 -3.3319 -0.0004 30 1 1.7174 -6.4263 1.4504 31 1 2.9599 -5.2920 2.0323 32 1 1.2677 -4.7600 1.8848 33 1 3.1132 -6.8673 -0.5220 34 1 4.3402 -5.6576 -0.0752 35 1 4.8812 -5.9863 -3.7136 36 1 5.6640 -6.0008 -2.1152 37 1 4.5527 -7.3136 -2.5735 38 1 1.7597 -6.4719 -2.4814 39 1 -0.7226 -6.5859 -4.7068 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133695793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:56 Heat of formation + Delta-G solvation = 12.435004 kcal Electronic energy + Delta-G solvation = -22348.317406 eV Core-core repulsion = 19031.719754 eV Total energy + Delta-G solvation = -3316.597652 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.07788 -40.77509 -38.33011 -36.12150 -34.37932 -34.03208 -32.30296 -30.42518 -29.25967 -28.02778 -27.56236 -25.65831 -24.22942 -22.18196 -21.54734 -21.21039 -19.56964 -19.27474 -18.49905 -17.28665 -17.16052 -16.64427 -15.97646 -15.70661 -15.63994 -15.27308 -15.08933 -14.52593 -14.27026 -14.12680 -13.96687 -13.59883 -13.54273 -13.34376 -13.15710 -12.94260 -12.79072 -12.65001 -12.59665 -12.24042 -12.14694 -11.81113 -11.55525 -11.46132 -11.40642 -11.10200 -10.94226 -10.90941 -10.79088 -10.08949 -8.92661 -7.91159 -5.15717 -1.37829 -0.27465 0.37759 0.80790 1.42715 1.44211 1.51907 1.86327 2.01242 2.56387 2.78007 3.43757 3.46949 3.65192 3.86651 4.04249 4.14645 4.22694 4.42680 4.57049 4.62986 4.70339 4.72798 4.82772 4.86486 4.94881 5.06336 5.14129 5.15187 5.25286 5.38026 5.41611 5.51479 5.60387 5.66751 6.32717 6.36798 6.55088 7.07922 7.38908 8.19549 8.38736 9.32662 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.005369 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.812754 B = 5213.703033 C = 6087.129329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.092 3.908 3 N -0.272 5.272 4 N -0.283 5.283 5 S 0.509 5.491 6 C -0.310 4.310 7 C 0.599 3.401 8 O -0.548 6.548 9 N -0.695 5.695 10 C 0.147 3.853 11 H 0.056 0.944 12 C -0.153 4.153 13 C -0.120 4.120 14 C 0.161 3.839 15 H 0.043 0.957 16 C -0.157 4.157 17 N -0.731 5.731 18 C -0.222 4.222 19 H 0.069 0.931 20 C -0.075 4.075 21 N -0.966 5.966 22 Si 0.955 3.045 23 H -0.269 1.269 24 H -0.294 1.294 25 H -0.301 1.301 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.409 0.591 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.027 0.973 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.371 0.629 39 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.231 7.535 14.247 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.055 4.055 3 N -0.137 5.137 4 N -0.264 5.264 5 S 0.644 5.356 6 C -0.451 4.451 7 C 0.382 3.618 8 O -0.426 6.426 9 N -0.347 5.347 10 C 0.043 3.957 11 H 0.074 0.926 12 C -0.211 4.211 13 C -0.158 4.158 14 C 0.053 3.947 15 H 0.062 0.938 16 C -0.217 4.217 17 N -0.371 5.371 18 C -0.355 4.355 19 H 0.087 0.913 20 C -0.268 4.268 21 N -0.618 5.618 22 Si 0.786 3.214 23 H -0.193 1.193 24 H -0.221 1.221 25 H -0.228 1.228 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.246 0.754 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.047 0.953 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.203 0.797 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.077 8.598 14.106 20.464 hybrid contribution -1.878 -0.380 -1.249 2.287 sum 10.199 8.218 12.858 18.354 Atomic orbital electron populations 1.20534 0.83292 1.04758 1.05018 1.23181 1.00945 0.85199 0.96211 1.70667 0.97187 1.28376 1.17498 1.78588 1.09474 1.17934 1.20428 1.81980 1.06804 0.98839 1.47931 1.27799 1.00168 0.99447 1.17675 1.16612 0.85862 0.82677 0.76612 1.90822 1.17539 1.83538 1.50716 1.45749 1.09282 1.05943 1.73687 1.20980 0.98651 0.78885 0.97183 0.92564 1.22102 1.02459 1.01724 0.94804 1.22119 0.99162 0.99760 0.94779 1.20563 0.86324 0.97021 0.90808 0.93846 1.22315 0.98953 1.00228 1.00203 1.42605 1.23852 1.44926 1.25744 1.19506 1.03124 1.13350 0.99471 0.91319 1.25357 0.98313 1.00818 1.02263 1.69786 1.14444 1.35978 1.41600 0.85335 0.77431 0.77994 0.80690 1.19329 1.22087 1.22842 0.87977 0.88607 0.89968 0.75398 0.90846 0.89786 0.93973 0.90070 0.87173 0.95326 0.90333 0.93895 0.79681 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.88 9.89 71.23 0.70 -1.17 16 2 C 0.09 2.52 7.00 42.65 0.30 2.82 16 3 N -0.27 -7.53 11.54 -48.18 -0.56 -8.09 16 4 N -0.28 -7.06 12.51 37.02 0.46 -6.60 16 5 S 0.51 9.52 23.05 -56.49 -1.30 8.21 16 6 C -0.31 -8.12 6.81 24.62 0.17 -7.95 16 7 C 0.60 18.41 7.77 86.59 0.67 19.09 16 8 O -0.55 -21.45 14.56 -4.10 -0.06 -21.51 16 9 N -0.69 -17.54 4.44 -446.05 -1.98 -19.52 16 10 C 0.15 4.14 2.52 44.99 0.11 4.26 16 11 H 0.06 2.26 7.05 -2.38 -0.02 2.24 16 12 C -0.15 -3.44 9.48 71.98 0.68 -2.75 16 13 C -0.12 -2.97 4.29 30.59 0.13 -2.84 16 14 C 0.16 5.41 2.84 44.99 0.13 5.53 16 15 H 0.04 1.47 7.56 -2.39 -0.02 1.45 16 16 C -0.16 -4.74 9.49 71.98 0.68 -4.06 16 17 N -0.73 -34.45 4.49 -322.93 -1.45 -35.90 16 18 C -0.22 -12.06 9.93 84.03 0.83 -11.22 16 19 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 20 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 21 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 22 Si 0.95 47.21 29.55 68.60 2.03 49.24 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 25 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 26 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.08 2.44 6.48 -2.38 -0.02 2.43 16 29 H 0.41 7.29 8.03 -92.71 -0.74 6.54 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.37 19.16 7.80 -92.72 -0.72 18.44 16 39 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -72.84 344.51 1.92 -70.92 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.38 Total: 24.71 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 4.88 Total: -2.19 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -3.24 Total: -129.39 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.06 Total: -21.51 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Atomic # 16 Polarization: 9.52 SS G_CDS: -1.30 Total: 8.21 kcal Total: -72.84 1.92 -70.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133695793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.355 kcal (2) G-P(sol) polarization free energy of solvation -72.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds