Wall clock time and date at job start Tue Mar 31 2020 04:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31237 * 124.05697 * 2 1 4 4 N 1.27341 * 120.03894 * 180.36139 * 3 2 1 5 5 S 1.56639 * 109.74039 * 359.69760 * 4 3 2 6 6 C 1.38247 * 124.05296 * 179.80896 * 2 1 3 7 7 C 1.47164 * 128.47970 * 359.97438 * 6 2 1 8 8 O 1.21625 * 119.99716 * 359.69690 * 7 6 2 9 9 N 1.34777 * 120.00501 * 179.70402 * 7 6 2 10 10 C 1.46495 * 120.00230 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47062 * 324.99175 * 10 9 7 12 12 C 1.52999 * 109.47657 * 84.99077 * 10 9 7 13 13 C 1.53002 * 109.47317 * 204.99663 * 10 9 7 14 14 C 1.53003 * 109.47269 * 64.99221 * 13 10 9 15 15 H 1.09000 * 109.46953 * 305.00936 * 14 13 10 16 16 C 1.52996 * 109.47332 * 185.00423 * 14 13 10 17 17 N 1.46505 * 109.46807 * 65.00478 * 14 13 10 18 18 C 1.36931 * 119.99788 * 205.00000 * 17 14 13 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 14 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 14 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00121 * 22 20 18 24 24 H 1.48501 * 109.47062 * 210.00072 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99871 * 22 20 18 26 26 H 1.09002 * 109.47391 * 270.18977 * 1 2 3 27 27 H 1.08996 * 109.47219 * 30.18701 * 1 2 3 28 28 H 1.09003 * 109.47285 * 150.18315 * 1 2 3 29 29 H 0.97000 * 119.99724 * 359.97438 * 9 7 6 30 30 H 1.09001 * 109.47265 * 179.97438 * 12 10 9 31 31 H 1.08991 * 109.47415 * 300.00577 * 12 10 9 32 32 H 1.09005 * 109.46583 * 60.00443 * 12 10 9 33 33 H 1.09000 * 109.46766 * 304.99737 * 13 10 9 34 34 H 1.08992 * 109.47398 * 184.99831 * 13 10 9 35 35 H 1.08998 * 109.47019 * 59.99816 * 16 14 13 36 36 H 1.08998 * 109.47099 * 180.02562 * 16 14 13 37 37 H 1.09002 * 109.46807 * 300.00318 * 16 14 13 38 38 H 0.97000 * 119.99792 * 24.99795 * 17 14 13 39 39 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5122 0.9981 -0.0070 5 16 3.9367 -0.5097 -0.0067 6 6 2.2811 -1.1454 0.0038 7 6 1.8394 -2.5492 0.0090 8 8 0.6521 -2.8130 0.0160 9 7 2.7504 -3.5424 0.0062 10 6 2.3106 -4.9398 0.0108 11 1 1.4015 -5.0326 0.6051 12 6 2.0302 -5.3911 -1.4240 13 6 3.4075 -5.8178 0.6164 14 6 3.6010 -5.4493 2.0888 15 1 3.8030 -4.3815 2.1726 16 6 4.7804 -6.2380 2.6613 17 7 2.3851 -5.7765 2.8378 18 6 2.0967 -5.1111 3.9993 19 1 2.7652 -4.3449 4.3631 20 6 0.9417 -5.4172 4.7060 21 7 0.1267 -6.3506 4.2624 22 14 0.5442 -4.5041 6.2865 23 1 -0.2649 -3.2993 5.9720 24 1 -0.2251 -5.3945 7.1924 25 1 1.8068 -4.0929 6.9514 26 1 -0.3634 0.0034 1.0277 27 1 -0.3633 0.8883 -0.5167 28 1 -0.3634 -0.8916 -0.5110 29 1 3.6973 -3.3320 0.0004 30 1 1.7034 -6.4309 -1.4205 31 1 1.2487 -4.7657 -1.8554 32 1 2.9393 -5.2983 -2.0182 33 1 4.3406 -5.6576 0.0763 34 1 3.1183 -6.8657 0.5391 35 1 5.6849 -5.9946 2.1039 36 1 4.9178 -5.9758 3.7103 37 1 4.5782 -7.3058 2.5774 38 1 1.7845 -6.4644 2.5109 39 1 -0.6802 -6.5647 4.7564 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133695804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:23 Heat of formation + Delta-G solvation = 35.549107 kcal Electronic energy + Delta-G solvation = -22347.310436 eV Core-core repulsion = 19031.715087 eV Total energy + Delta-G solvation = -3315.595349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -41.03606 -39.57710 -36.94481 -34.60017 -33.32862 -32.26065 -31.01741 -28.66132 -28.22619 -27.00064 -26.38240 -23.68925 -23.09107 -20.98024 -20.39273 -19.80086 -18.55797 -17.58442 -17.08254 -16.17995 -15.97385 -14.90138 -14.79008 -14.37419 -14.05615 -14.01046 -13.67552 -13.14795 -13.11540 -13.00019 -12.79563 -12.51609 -12.21313 -12.06781 -11.78678 -11.68683 -11.60555 -11.11975 -10.85059 -10.66531 -10.50446 -10.42148 -10.26370 -9.95170 -9.92857 -9.91791 -9.77252 -9.64301 -8.92944 -8.89462 -6.94790 -5.75269 -3.03357 -0.34848 0.71080 1.35720 1.86906 3.01981 3.14429 3.44124 3.49177 3.50569 3.79709 4.49838 4.60242 4.69624 5.04767 5.23299 5.31601 5.41357 5.56782 5.58083 5.61391 5.67463 5.80639 5.86185 5.96147 6.06160 6.11574 6.23438 6.27352 6.37675 6.50511 6.57070 6.69479 6.84753 7.03232 7.44500 7.58158 7.70212 8.19628 8.43094 9.54694 10.11230 10.45530 11.47313 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.005370 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.888572 B = 5213.385611 C = 6085.036449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.098 3.902 3 N -0.251 5.251 4 N -0.258 5.258 5 S 0.406 5.594 6 C -0.279 4.279 7 C 0.601 3.399 8 O -0.504 6.504 9 N -0.706 5.706 10 C 0.144 3.856 11 H 0.111 0.889 12 C -0.162 4.162 13 C -0.132 4.132 14 C 0.170 3.830 15 H 0.044 0.956 16 C -0.166 4.166 17 N -0.720 5.720 18 C -0.236 4.236 19 H 0.066 0.934 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.901 3.099 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.283 1.283 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.393 0.607 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.383 0.617 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.096 6.949 -13.261 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 N -0.117 5.117 4 N -0.238 5.238 5 S 0.541 5.459 6 C -0.420 4.420 7 C 0.384 3.616 8 O -0.379 6.379 9 N -0.357 5.357 10 C 0.041 3.959 11 H 0.129 0.871 12 C -0.220 4.220 13 C -0.171 4.171 14 C 0.060 3.940 15 H 0.062 0.938 16 C -0.226 4.226 17 N -0.362 5.362 18 C -0.367 4.367 19 H 0.084 0.916 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.732 3.268 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.209 1.209 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.121 0.879 29 H 0.227 0.773 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.217 0.783 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.842 7.974 -13.107 17.707 hybrid contribution -1.124 -0.203 0.994 1.514 sum 7.719 7.771 -12.113 16.331 Atomic orbital electron populations 1.20543 0.83688 1.04796 1.04701 1.22959 1.00278 0.85037 0.96577 1.70597 0.96931 1.28087 1.16114 1.78860 1.09486 1.15583 1.19915 1.82450 1.10341 1.01686 1.51373 1.27896 0.97671 1.00408 1.16039 1.16359 0.86219 0.81720 0.77306 1.90843 1.15678 1.82698 1.48697 1.45864 1.08633 1.06636 1.74571 1.21155 1.00371 0.78066 0.96321 0.87119 1.22195 1.01403 1.01900 0.96525 1.22194 0.97344 1.00049 0.97494 1.20233 0.88198 0.96812 0.88731 0.93784 1.22455 0.97972 1.00908 1.01243 1.42390 1.22551 1.45404 1.25848 1.19135 1.04194 1.14432 0.98983 0.91573 1.24682 0.97540 0.99233 0.99166 1.69640 1.14009 1.33825 1.40357 0.86288 0.77914 0.79053 0.83534 1.21762 1.21762 1.20909 0.89072 0.90077 0.87946 0.77347 0.91361 0.92374 0.92994 0.91873 0.90226 0.94664 0.92868 0.93459 0.78287 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 9.89 36.00 0.36 -0.58 16 2 C 0.10 1.36 7.00 -82.84 -0.58 0.78 16 3 N -0.25 -3.60 11.54 33.42 0.39 -3.22 16 4 N -0.26 -3.47 12.51 60.35 0.75 -2.71 16 5 S 0.41 4.37 23.05 -107.50 -2.48 1.89 16 6 C -0.28 -3.80 6.81 -35.96 -0.24 -4.05 16 7 C 0.60 9.34 7.77 -12.64 -0.10 9.24 16 8 O -0.50 -9.50 14.56 5.26 0.08 -9.43 16 9 N -0.71 -9.53 4.44 -54.97 -0.24 -9.77 16 10 C 0.14 2.12 2.52 -67.93 -0.17 1.95 16 11 H 0.11 2.16 7.05 -51.93 -0.37 1.80 16 12 C -0.16 -1.97 9.48 37.16 0.35 -1.62 16 13 C -0.13 -1.84 4.29 -26.73 -0.11 -1.95 16 14 C 0.17 3.04 2.84 -67.93 -0.19 2.85 16 15 H 0.04 0.80 7.56 -51.93 -0.39 0.41 16 16 C -0.17 -2.74 9.49 37.16 0.35 -2.39 16 17 N -0.72 -16.95 4.49 -53.42 -0.24 -17.19 16 18 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 22 Si 0.90 22.59 29.55 -169.99 -5.02 17.57 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 1.32 6.48 -51.93 -0.34 0.99 16 29 H 0.39 4.17 8.03 -40.82 -0.33 3.85 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.38 9.68 7.80 -40.82 -0.32 9.36 16 39 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -32.24 344.51 -6.95 -39.20 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.51 Total: 8.25 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.59 Total: -2.70 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 1.38 Total: -59.98 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -2.48 Total: 1.89 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.24 -6.95 -39.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133695804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.745 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds