Wall clock time and date at job start Tue Mar 31 2020 04:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30884 * 122.98069 * 2 1 4 4 C 1.30229 * 117.25860 * 179.97438 * 3 2 1 5 5 N 1.37844 * 124.74583 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00028 * 0.02732 * 5 4 3 7 7 C 1.46498 * 120.00238 * 180.02562 * 5 4 3 8 8 S 1.70920 * 110.50989 * 359.97438 * 4 3 2 9 9 C 1.36699 * 122.98733 * 179.97438 * 2 1 3 10 10 C 1.46221 * 126.11172 * 0.02562 * 9 2 1 11 11 O 1.21757 * 119.99864 * 359.97438 * 10 9 2 12 12 N 1.34774 * 120.00266 * 180.02562 * 10 9 2 13 13 C 1.46507 * 120.00119 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47006 * 179.97438 * 13 12 10 15 15 N 1.46507 * 109.47003 * 179.97438 * 14 13 12 16 16 C 1.36938 * 119.99779 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00083 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99450 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00372 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99633 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47252 * 60.00196 * 20 18 16 22 22 H 1.48505 * 109.46953 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46909 * 299.99954 * 20 18 16 24 24 H 1.09000 * 109.47001 * 90.02751 * 1 2 3 25 25 H 1.09003 * 109.47166 * 210.02487 * 1 2 3 26 26 H 1.09001 * 109.47746 * 330.02618 * 1 2 3 27 27 H 1.08993 * 109.47565 * 90.00069 * 6 5 4 28 28 H 1.09002 * 109.47076 * 209.99846 * 6 5 4 29 29 H 1.09001 * 109.47156 * 329.99394 * 6 5 4 30 30 H 1.08998 * 109.47378 * 89.99932 * 7 5 4 31 31 H 1.09002 * 109.47409 * 210.00324 * 7 5 4 32 32 H 1.09006 * 109.46774 * 330.00184 * 7 5 4 33 33 H 0.96999 * 120.00604 * 359.97438 * 12 10 9 34 34 H 1.08997 * 109.46600 * 299.99280 * 13 12 10 35 35 H 1.08998 * 109.47376 * 59.98984 * 13 12 10 36 36 H 1.09001 * 109.47718 * 299.99417 * 14 13 12 37 37 H 1.09006 * 109.47344 * 59.99804 * 14 13 12 38 38 H 0.96991 * 119.99681 * 359.97438 * 15 14 13 39 39 H 0.96996 * 119.99618 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2194 1.0979 0.0000 4 6 3.5153 0.9681 0.0005 5 7 4.4099 2.0168 0.0001 6 6 3.9201 3.3974 -0.0004 7 6 5.8505 1.7507 0.0002 8 16 3.9515 -0.6845 0.0018 9 6 2.2512 -1.1466 0.0005 10 6 1.7296 -2.5126 0.0006 11 8 0.5273 -2.7051 0.0007 12 7 2.5795 -3.5586 0.0016 13 6 2.0568 -4.9272 0.0012 14 6 3.2224 -5.9183 0.0019 15 7 2.6997 -7.2869 0.0021 16 6 3.5633 -8.3496 0.0032 17 1 4.6297 -8.1788 0.0045 18 6 3.0680 -9.6464 0.0039 19 7 1.7683 -9.8545 0.0039 20 14 4.2461 -11.0961 0.0062 21 1 5.1004 -11.0378 1.2195 22 1 3.4716 -12.3632 0.0060 23 1 5.1026 -11.0398 -1.2056 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 3.7987 3.7403 1.0270 28 1 4.6374 4.0372 -0.5145 29 1 2.9599 3.4421 -0.5143 30 1 6.2078 1.6842 -1.0274 31 1 6.3695 2.5600 0.5137 32 1 6.0461 0.8096 0.5144 33 1 3.5373 -3.4053 0.0020 34 1 1.4463 -5.0832 0.8905 35 1 1.4480 -5.0834 -0.8894 36 1 3.8327 -5.7622 -0.8876 37 1 3.8315 -5.7622 0.8924 38 1 1.7420 -7.4402 0.0021 39 1 1.4223 -10.7606 0.0040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134868559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:53 Heat of formation + Delta-G solvation = 30.149151 kcal Electronic energy + Delta-G solvation = -20925.813903 eV Core-core repulsion = 17609.984394 eV Total energy + Delta-G solvation = -3315.829509 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.34100 -39.14866 -37.18605 -35.61360 -33.80835 -31.52126 -31.18484 -28.90190 -28.88484 -27.08381 -26.66052 -23.69922 -22.45954 -21.73740 -21.25328 -19.44296 -18.45684 -17.40624 -16.78784 -16.50849 -16.20512 -15.33420 -15.30402 -14.88080 -14.49630 -14.43820 -13.87066 -13.51861 -13.47365 -13.25019 -13.17969 -13.13686 -12.87731 -12.62736 -12.54000 -12.41595 -11.42123 -11.35772 -11.08250 -10.79723 -10.78382 -10.22146 -10.14298 -10.09736 -9.80159 -9.61136 -9.44940 -8.96475 -8.80547 -7.88485 -6.97604 -5.77616 -3.08330 0.37118 0.76640 1.47547 2.33956 2.46207 3.32924 3.33552 3.44022 3.48461 3.49862 4.09441 4.52733 4.59728 4.68712 4.72312 4.96477 5.03757 5.07082 5.10988 5.32837 5.52151 5.56210 5.62096 5.65305 5.78484 5.81454 5.98907 6.12722 6.16739 6.27109 6.49501 6.54663 6.73151 6.77550 7.55239 7.66943 7.68850 8.34285 8.40199 9.51168 10.06027 10.41132 11.44914 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.027208 B = 0.002677 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.866047 B =10456.317635 C =11448.831016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.203 3.797 3 N -0.553 5.553 4 C 0.325 3.675 5 N -0.581 5.581 6 C 0.099 3.901 7 C 0.087 3.913 8 S 0.130 5.870 9 C -0.346 4.346 10 C 0.602 3.398 11 O -0.533 6.533 12 N -0.721 5.721 13 C 0.113 3.887 14 C 0.144 3.856 15 N -0.729 5.729 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.394 0.606 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.387 0.613 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.181 28.940 -0.015 29.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 N -0.279 5.279 4 C -0.043 4.043 5 N -0.299 5.299 6 C -0.046 4.046 7 C -0.056 4.056 8 S 0.381 5.619 9 C -0.472 4.472 10 C 0.388 3.612 11 O -0.412 6.412 12 N -0.372 5.372 13 C -0.010 4.010 14 C 0.016 3.984 15 N -0.374 5.374 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 H 0.100 0.900 25 H 0.121 0.879 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.228 0.772 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.220 0.780 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.407 28.797 -0.012 29.734 hybrid contribution 0.105 -0.686 -0.004 0.694 sum 7.511 28.112 -0.017 29.098 Atomic orbital electron populations 1.20671 0.86013 1.04420 1.03719 1.20529 0.97842 0.84249 0.90996 1.66048 1.02110 1.31694 1.28055 1.23679 0.90930 0.92818 0.96862 1.45713 1.03907 1.03495 1.76751 1.21741 1.01155 0.79556 1.02100 1.21926 0.77882 1.03042 1.02756 1.83719 1.07067 0.98212 1.72863 1.25041 0.94127 0.98678 1.29366 1.16480 0.86053 0.82271 0.76388 1.90791 1.14262 1.84992 1.51150 1.45805 1.09348 1.06513 1.75493 1.21595 0.97723 0.78944 1.02787 1.20758 0.93492 0.85738 0.98411 1.42176 1.06731 0.98799 1.89702 1.19146 0.89601 0.85265 1.43507 0.91097 1.24782 0.95936 0.97434 1.02693 1.69659 1.10599 1.20485 1.57135 0.86223 0.79749 0.82061 0.77845 1.21200 1.21614 1.21202 0.90025 0.87908 0.90977 0.92567 0.90953 0.89986 0.91630 0.89597 0.90856 0.77187 0.91034 0.91036 0.95796 0.95812 0.77960 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 9.71 36.00 0.35 -0.74 16 2 C 0.20 2.74 6.83 -83.55 -0.57 2.17 16 3 N -0.55 -6.98 9.71 -10.94 -0.11 -7.08 16 4 C 0.32 3.46 7.71 -87.98 -0.68 2.79 16 5 N -0.58 -4.38 3.36 -192.01 -0.64 -5.02 16 6 C 0.10 0.56 10.54 59.85 0.63 1.19 16 7 C 0.09 0.37 10.39 59.85 0.62 0.99 16 8 S 0.13 1.35 20.74 -107.50 -2.23 -0.88 16 9 C -0.35 -4.80 6.49 -36.93 -0.24 -5.04 16 10 C 0.60 9.74 7.76 -13.06 -0.10 9.64 16 11 O -0.53 -10.03 14.30 5.14 0.07 -9.96 16 12 N -0.72 -11.04 5.55 -61.76 -0.34 -11.38 16 13 C 0.11 2.03 5.79 -4.04 -0.02 2.00 16 14 C 0.14 2.90 6.37 -4.04 -0.03 2.88 16 15 N -0.73 -18.80 5.60 -59.90 -0.34 -19.13 16 16 C -0.24 -6.88 9.99 -15.06 -0.15 -7.04 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 20 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.10 1.41 6.04 -51.93 -0.31 1.10 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 29 H 0.08 0.58 7.59 -51.93 -0.39 0.19 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.18 8.07 -51.93 -0.42 -0.24 16 32 H 0.07 0.32 7.01 -51.93 -0.36 -0.04 16 33 H 0.39 5.13 7.64 -40.82 -0.31 4.82 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.39 10.52 7.67 -40.82 -0.31 10.20 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -34.45 343.66 -8.45 -42.90 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.46 Total: 7.32 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -0.28 Total: 8.40 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -0.70 Total: -70.36 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.23 Total: -0.88 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.45 -8.45 -42.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134868559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.049 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds