Wall clock time and date at job start Tue Mar 31 2020 04:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30884 * 122.98069 * 2 1 4 4 C 1.30229 * 117.25860 * 179.97438 * 3 2 1 5 5 N 1.37844 * 124.74583 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00028 * 0.02732 * 5 4 3 7 7 C 1.46498 * 120.00238 * 180.02562 * 5 4 3 8 8 S 1.70920 * 110.50989 * 359.97438 * 4 3 2 9 9 C 1.36699 * 122.98733 * 179.97438 * 2 1 3 10 10 C 1.46221 * 126.11172 * 0.02562 * 9 2 1 11 11 O 1.21757 * 119.99864 * 359.97438 * 10 9 2 12 12 N 1.34774 * 120.00266 * 180.02562 * 10 9 2 13 13 C 1.46507 * 120.00119 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47006 * 179.97438 * 13 12 10 15 15 N 1.46507 * 109.47003 * 179.97438 * 14 13 12 16 16 C 1.36938 * 119.99779 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00083 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99450 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00372 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99633 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47252 * 60.00196 * 20 18 16 22 22 H 1.48505 * 109.46953 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46909 * 299.99954 * 20 18 16 24 24 H 1.09000 * 109.47001 * 90.02751 * 1 2 3 25 25 H 1.09003 * 109.47166 * 210.02487 * 1 2 3 26 26 H 1.09001 * 109.47746 * 330.02618 * 1 2 3 27 27 H 1.08993 * 109.47565 * 90.00069 * 6 5 4 28 28 H 1.09002 * 109.47076 * 209.99846 * 6 5 4 29 29 H 1.09001 * 109.47156 * 329.99394 * 6 5 4 30 30 H 1.08998 * 109.47378 * 89.99932 * 7 5 4 31 31 H 1.09002 * 109.47409 * 210.00324 * 7 5 4 32 32 H 1.09006 * 109.46774 * 330.00184 * 7 5 4 33 33 H 0.96999 * 120.00604 * 359.97438 * 12 10 9 34 34 H 1.08997 * 109.46600 * 299.99280 * 13 12 10 35 35 H 1.08998 * 109.47376 * 59.98984 * 13 12 10 36 36 H 1.09001 * 109.47718 * 299.99417 * 14 13 12 37 37 H 1.09006 * 109.47344 * 59.99804 * 14 13 12 38 38 H 0.96991 * 119.99681 * 359.97438 * 15 14 13 39 39 H 0.96996 * 119.99618 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2194 1.0979 0.0000 4 6 3.5153 0.9681 0.0005 5 7 4.4099 2.0168 0.0001 6 6 3.9201 3.3974 -0.0004 7 6 5.8505 1.7507 0.0002 8 16 3.9515 -0.6845 0.0018 9 6 2.2512 -1.1466 0.0005 10 6 1.7296 -2.5126 0.0006 11 8 0.5273 -2.7051 0.0007 12 7 2.5795 -3.5586 0.0016 13 6 2.0568 -4.9272 0.0012 14 6 3.2224 -5.9183 0.0019 15 7 2.6997 -7.2869 0.0021 16 6 3.5633 -8.3496 0.0032 17 1 4.6297 -8.1788 0.0045 18 6 3.0680 -9.6464 0.0039 19 7 1.7683 -9.8545 0.0039 20 14 4.2461 -11.0961 0.0062 21 1 5.1004 -11.0378 1.2195 22 1 3.4716 -12.3632 0.0060 23 1 5.1026 -11.0398 -1.2056 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 3.7987 3.7403 1.0270 28 1 4.6374 4.0372 -0.5145 29 1 2.9599 3.4421 -0.5143 30 1 6.2078 1.6842 -1.0274 31 1 6.3695 2.5600 0.5137 32 1 6.0461 0.8096 0.5144 33 1 3.5373 -3.4053 0.0020 34 1 1.4463 -5.0832 0.8905 35 1 1.4480 -5.0834 -0.8894 36 1 3.8327 -5.7622 -0.8876 37 1 3.8315 -5.7622 0.8924 38 1 1.7420 -7.4402 0.0021 39 1 1.4223 -10.7606 0.0040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134868559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:49 Heat of formation + Delta-G solvation = 5.131582 kcal Electronic energy + Delta-G solvation = -20926.898746 eV Core-core repulsion = 17609.984394 eV Total energy + Delta-G solvation = -3316.914352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -41.32299 -40.28831 -37.90821 -37.25233 -35.51432 -33.21598 -32.32317 -30.29085 -29.33197 -28.47095 -27.36771 -25.58971 -23.37663 -23.11608 -22.55010 -20.53972 -19.34397 -19.23300 -17.96618 -17.50133 -17.00522 -16.66790 -16.53553 -16.22422 -15.75442 -15.47470 -15.25994 -15.01697 -14.72911 -14.67532 -14.42997 -13.75961 -13.51897 -13.44636 -13.27242 -13.08894 -13.03521 -12.99296 -12.63089 -12.54637 -12.23459 -12.11494 -11.85918 -11.20619 -11.02999 -10.97632 -10.71177 -10.29966 -10.17743 -9.06630 -8.65688 -7.95840 -5.27642 -0.56231 -0.05337 0.56905 1.47635 1.48907 1.53008 1.59070 1.71898 2.05503 2.17659 2.58807 3.33691 3.37948 3.83386 3.99857 4.08165 4.10129 4.21471 4.22639 4.33655 4.41342 4.56977 4.64964 4.70007 4.72630 4.77731 4.84531 4.93004 5.00169 5.11580 5.23758 5.37148 5.49046 5.62382 5.79850 6.24439 6.40639 6.74707 7.11957 7.30830 8.01930 8.25894 9.27616 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.027208 B = 0.002677 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.866047 B =10456.317635 C =11448.831016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.204 3.796 3 N -0.574 5.574 4 C 0.321 3.679 5 N -0.571 5.571 6 C 0.093 3.907 7 C 0.075 3.925 8 S 0.176 5.824 9 C -0.387 4.387 10 C 0.601 3.399 11 O -0.569 6.569 12 N -0.712 5.712 13 C 0.130 3.870 14 C 0.149 3.851 15 N -0.746 5.746 16 C -0.250 4.250 17 H 0.083 0.917 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.981 3.019 21 H -0.275 1.275 22 H -0.296 1.296 23 H -0.275 1.275 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.407 0.593 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.375 0.625 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.127 30.845 -0.048 32.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.063 3.937 3 N -0.301 5.301 4 C -0.047 4.047 5 N -0.287 5.287 6 C -0.051 4.051 7 C -0.066 4.066 8 S 0.427 5.573 9 C -0.513 4.513 10 C 0.389 3.611 11 O -0.451 6.451 12 N -0.364 5.364 13 C 0.006 3.994 14 C 0.022 3.978 15 N -0.389 5.389 16 C -0.381 4.381 17 H 0.101 0.899 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.809 3.191 21 H -0.201 1.201 22 H -0.223 1.223 23 H -0.201 1.201 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.243 0.757 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.206 0.794 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.461 30.785 -0.045 32.514 hybrid contribution -0.692 -1.020 0.006 1.233 sum 9.770 29.765 -0.039 31.327 Atomic orbital electron populations 1.20619 0.85902 1.04149 1.03871 1.20724 0.98374 0.84618 0.89957 1.66102 1.02999 1.31241 1.29802 1.24059 0.91048 0.94010 0.95592 1.46233 1.04839 1.03499 1.74167 1.21926 1.01427 0.78910 1.02802 1.22271 0.75917 1.04276 1.04129 1.83379 1.03828 0.97336 1.72781 1.24816 0.96746 0.97320 1.32437 1.16794 0.85614 0.83199 0.75467 1.90766 1.15783 1.85735 1.52788 1.45591 1.10014 1.05253 1.75549 1.21192 0.96644 0.80015 1.01555 1.20833 0.94134 0.83591 0.99218 1.42402 1.06092 1.00659 1.89794 1.19614 0.90463 0.86089 1.41964 0.89912 1.25694 0.97573 1.00395 1.03276 1.69835 1.12606 1.20624 1.59003 0.85113 0.77607 0.78036 0.78367 1.20074 1.22279 1.20076 0.89635 0.89813 0.89450 0.91874 0.87728 0.91615 0.90205 0.86716 0.90874 0.75684 0.92366 0.92368 0.94514 0.94535 0.79365 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.16 9.71 71.24 0.69 -1.46 16 2 C 0.20 5.50 6.83 42.34 0.29 5.79 16 3 N -0.57 -13.95 9.71 -188.53 -1.83 -15.78 16 4 C 0.32 6.25 7.71 179.42 1.38 7.64 16 5 N -0.57 -6.94 3.36 -761.39 -2.56 -9.50 16 6 C 0.09 0.79 10.54 127.77 1.35 2.14 16 7 C 0.08 0.36 10.39 127.77 1.33 1.69 16 8 S 0.18 3.35 20.74 -56.49 -1.17 2.18 16 9 C -0.39 -10.68 6.49 23.98 0.16 -10.52 16 10 C 0.60 19.80 7.76 86.32 0.67 20.47 16 11 O -0.57 -22.35 14.30 -4.53 -0.06 -22.41 16 12 N -0.71 -21.73 5.55 -467.50 -2.60 -24.32 16 13 C 0.13 4.75 5.79 86.38 0.50 5.25 16 14 C 0.15 5.91 6.37 86.38 0.55 6.46 16 15 N -0.75 -38.68 5.60 -343.44 -1.92 -40.60 16 16 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 17 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 18 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 19 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 20 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.08 2.43 6.04 -2.39 -0.01 2.41 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.10 0.24 8.07 -2.39 -0.02 0.22 16 29 H 0.06 0.82 7.59 -2.39 -0.02 0.80 16 30 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.11 -0.04 8.07 -2.39 -0.02 -0.06 16 32 H 0.07 0.40 7.01 -2.38 -0.02 0.38 16 33 H 0.41 10.15 7.64 -92.71 -0.71 9.44 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.37 20.92 7.67 -92.71 -0.71 20.21 16 39 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -74.90 343.66 0.05 -74.85 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.34 Total: 27.36 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 8.22 Total: 20.32 kcal Atomic # 7 Polarization: -141.67 SS G_CDS: -8.62 Total: -150.29 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.06 Total: -22.41 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.17 Total: 2.18 kcal Total: -74.90 0.05 -74.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134868559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.979 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds