Wall clock time and date at job start Tue Mar 31 2020 04:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 120.00572 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00110 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47144 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47272 * 119.99947 * 13 11 9 16 16 H 1.48504 * 109.47033 * 240.00010 * 13 11 9 17 17 N 1.46501 * 109.47013 * 240.00594 * 2 1 3 18 18 C 1.34781 * 120.00231 * 84.99743 * 17 2 1 19 19 O 1.21596 * 119.99779 * 359.97438 * 18 17 2 20 20 C 1.47450 * 119.99789 * 180.02562 * 18 17 2 21 21 C 1.37983 * 124.14855 * 179.72655 * 20 18 17 22 22 S 1.72104 * 104.02999 * 179.89887 * 21 20 18 23 23 N 1.56407 * 96.15564 * 0.32729 * 22 21 20 24 24 N 1.27422 * 109.87482 * 359.79865 * 23 22 21 25 25 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46646 * 299.99399 * 1 2 3 27 27 H 1.08992 * 109.47133 * 60.00019 * 1 2 3 28 28 H 1.08996 * 109.47452 * 65.00111 * 4 2 1 29 29 H 1.09001 * 109.46997 * 304.99684 * 4 2 1 30 30 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 31 31 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 32 32 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 33 33 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 34 34 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 35 35 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 36 36 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 37 37 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 38 38 H 0.97003 * 119.99667 * 265.00116 * 17 2 1 39 39 H 1.07996 * 127.98909 * 359.97008 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0749 -1.3342 2.5631 7 6 5.5997 -1.2256 2.6278 8 7 6.0880 -1.9152 3.8245 9 6 7.4300 -1.9514 4.0943 10 1 8.1286 -1.4718 3.4246 11 6 7.8928 -2.6053 5.2279 12 7 7.0415 -3.1902 6.0438 13 14 9.7234 -2.6540 5.5963 14 1 10.4619 -1.9269 4.5327 15 1 9.9816 -2.0087 6.9085 16 1 10.1821 -4.0658 5.6401 17 7 2.0183 -0.6905 -1.1963 18 6 2.1470 -0.0181 -2.3572 19 8 1.8573 1.1616 -2.4118 20 6 2.6380 -0.7133 -3.5613 21 6 2.7971 -0.1111 -4.7926 22 16 3.3891 -1.3738 -5.8011 23 7 3.3873 -2.4836 -4.6990 24 7 2.9760 -1.9974 -3.5953 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.7518 -1.7716 1.2054 29 1 1.6055 -0.2619 2.1369 30 1 3.8533 0.4369 1.3573 31 1 3.9995 -1.0727 0.4257 32 1 3.6403 -0.8743 3.4506 33 1 3.7866 -2.3844 2.5197 34 1 6.0347 -1.6851 1.7403 35 1 5.8876 -0.1752 2.6713 36 1 5.4606 -2.3463 4.4258 37 1 7.3648 -3.6469 6.8362 38 1 2.2490 -1.6317 -1.1527 39 1 2.5975 0.9157 -5.0612 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171942826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:40 Heat of formation + Delta-G solvation = 26.214039 kcal Electronic energy + Delta-G solvation = -20861.281912 eV Core-core repulsion = 17545.281764 eV Total energy + Delta-G solvation = -3316.000148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.47220 -39.73602 -37.05438 -35.27779 -33.32076 -32.64300 -31.44426 -30.25395 -27.50713 -27.43287 -24.71225 -23.92914 -22.09321 -21.24602 -20.85956 -20.63555 -19.67376 -17.17435 -16.94600 -16.63519 -16.40046 -15.83642 -15.06014 -14.95343 -14.68603 -14.35637 -13.95037 -13.52821 -13.17036 -13.02515 -12.95932 -12.92134 -12.55873 -12.33719 -11.76676 -11.48160 -11.27206 -11.00354 -10.82272 -10.78656 -10.68863 -10.51281 -10.48897 -10.38634 -10.35264 -10.26583 -9.94285 -9.64897 -9.33951 -8.83287 -6.86977 -5.72657 -3.00855 -0.36854 0.48368 1.05469 1.10710 2.78229 2.81247 3.43638 3.45901 3.51210 3.53776 4.25773 4.44160 4.55560 4.66596 4.84918 4.92341 4.97857 5.25295 5.38748 5.43901 5.57031 5.61333 5.69603 5.78063 5.88402 5.94804 6.10746 6.16667 6.33701 6.34724 6.41839 6.50015 6.93449 6.95904 6.97471 7.25716 7.74210 7.78720 8.46891 9.57571 10.17086 10.51724 11.50633 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.002628 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.479012 B =10650.072260 C =11978.473398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.093 0.907 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.700 5.700 18 C 0.606 3.394 19 O -0.527 6.527 20 C -0.023 4.023 21 C -0.237 4.237 22 S 0.462 5.538 23 N -0.286 5.286 24 N -0.209 5.209 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.411 0.589 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 6.488 -24.708 29.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.111 0.889 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.368 4.368 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.351 5.351 18 C 0.387 3.613 19 O -0.403 6.403 20 C -0.170 4.170 21 C -0.395 4.395 22 S 0.597 5.403 23 N -0.267 5.267 24 N -0.079 5.079 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.248 0.752 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -14.458 5.699 -25.445 29.815 hybrid contribution 0.443 0.536 1.314 1.487 sum -14.015 6.235 -24.131 28.594 Atomic orbital electron populations 1.22185 0.95003 1.02362 1.02650 1.21180 0.94008 0.97785 0.83435 0.88939 1.21951 0.96967 1.01139 0.96470 1.21538 0.93913 1.01114 0.98818 1.21721 0.97238 1.00351 0.97014 1.20648 0.91047 0.95294 0.90544 1.42399 1.05346 1.65031 1.25126 1.19304 0.83941 1.28232 1.05347 0.91202 1.24749 0.97732 1.01018 0.97745 1.69675 1.32666 1.40956 1.15109 0.86107 0.85098 0.77220 0.77749 1.20566 1.21864 1.21867 1.45985 1.65405 1.14807 1.08930 1.16626 0.77742 0.85583 0.81385 1.90837 1.50553 1.14535 1.84355 1.22726 1.06907 0.90414 0.96986 1.28902 1.04728 1.09166 0.96659 1.81598 1.43932 0.93836 1.20885 1.78688 1.21641 1.25726 1.00612 1.71545 1.10402 1.10228 1.15753 0.92266 0.91170 0.92234 0.91090 0.89895 0.91948 0.92062 0.92019 0.92045 0.96619 0.96601 0.78343 0.93606 0.75236 0.77427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.35 2.57 -67.93 -0.17 1.18 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 4 C -0.13 -1.26 4.75 -26.73 -0.13 -1.39 16 5 C -0.12 -1.47 5.10 -26.73 -0.14 -1.60 16 6 C -0.13 -2.04 5.33 -26.73 -0.14 -2.18 16 7 C 0.15 3.21 6.26 -4.05 -0.03 3.19 16 8 N -0.74 -19.56 5.60 -59.91 -0.34 -19.89 16 9 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 10 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 12 N -0.93 -29.06 13.06 55.49 0.72 -28.33 16 13 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 16 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 17 N -0.70 -7.08 4.53 -54.87 -0.25 -7.33 16 18 C 0.61 6.87 7.78 -12.51 -0.10 6.78 16 19 O -0.53 -7.14 16.46 5.28 0.09 -7.05 16 20 C -0.02 -0.23 6.87 -83.78 -0.58 -0.81 16 21 C -0.24 -1.67 11.21 30.64 0.34 -1.32 16 22 S 0.46 2.64 23.38 -107.50 -2.51 0.13 16 23 N -0.29 -2.85 12.49 60.35 0.75 -2.09 16 24 N -0.21 -2.29 11.24 32.74 0.37 -1.92 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.79 7.75 -51.93 -0.40 0.39 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 10.60 7.67 -40.82 -0.31 10.28 16 37 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.41 3.90 8.19 -40.82 -0.33 3.56 16 39 H 0.21 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -34.67 349.27 -7.39 -42.07 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.64 Total: 6.06 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.83 Total: -4.86 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 1.26 Total: -59.57 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: 0.09 Total: -7.05 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.51 Total: 0.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.67 -7.39 -42.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171942826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.281 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds