Wall clock time and date at job start Tue Mar 31 2020 04:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 120.00572 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00110 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47144 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47272 * 119.99947 * 13 11 9 16 16 H 1.48504 * 109.47033 * 240.00010 * 13 11 9 17 17 N 1.46501 * 109.47013 * 240.00594 * 2 1 3 18 18 C 1.34781 * 120.00231 * 84.99743 * 17 2 1 19 19 O 1.21596 * 119.99779 * 359.97438 * 18 17 2 20 20 C 1.47450 * 119.99789 * 180.02562 * 18 17 2 21 21 C 1.37983 * 124.14855 * 179.72655 * 20 18 17 22 22 S 1.72104 * 104.02999 * 179.89887 * 21 20 18 23 23 N 1.56407 * 96.15564 * 0.32729 * 22 21 20 24 24 N 1.27422 * 109.87482 * 359.79865 * 23 22 21 25 25 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46646 * 299.99399 * 1 2 3 27 27 H 1.08992 * 109.47133 * 60.00019 * 1 2 3 28 28 H 1.08996 * 109.47452 * 65.00111 * 4 2 1 29 29 H 1.09001 * 109.46997 * 304.99684 * 4 2 1 30 30 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 31 31 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 32 32 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 33 33 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 34 34 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 35 35 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 36 36 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 37 37 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 38 38 H 0.97003 * 119.99667 * 265.00116 * 17 2 1 39 39 H 1.07996 * 127.98909 * 359.97008 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0749 -1.3342 2.5631 7 6 5.5997 -1.2256 2.6278 8 7 6.0880 -1.9152 3.8245 9 6 7.4300 -1.9514 4.0943 10 1 8.1286 -1.4718 3.4246 11 6 7.8928 -2.6053 5.2279 12 7 7.0415 -3.1902 6.0438 13 14 9.7234 -2.6540 5.5963 14 1 10.4619 -1.9269 4.5327 15 1 9.9816 -2.0087 6.9085 16 1 10.1821 -4.0658 5.6401 17 7 2.0183 -0.6905 -1.1963 18 6 2.1470 -0.0181 -2.3572 19 8 1.8573 1.1616 -2.4118 20 6 2.6380 -0.7133 -3.5613 21 6 2.7971 -0.1111 -4.7926 22 16 3.3891 -1.3738 -5.8011 23 7 3.3873 -2.4836 -4.6990 24 7 2.9760 -1.9974 -3.5953 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.7518 -1.7716 1.2054 29 1 1.6055 -0.2619 2.1369 30 1 3.8533 0.4369 1.3573 31 1 3.9995 -1.0727 0.4257 32 1 3.6403 -0.8743 3.4506 33 1 3.7866 -2.3844 2.5197 34 1 6.0347 -1.6851 1.7403 35 1 5.8876 -0.1752 2.6713 36 1 5.4606 -2.3463 4.4258 37 1 7.3648 -3.6469 6.8362 38 1 2.2490 -1.6317 -1.1527 39 1 2.5975 0.9157 -5.0612 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171942826.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:40 Heat of formation + Delta-G solvation = 1.252460 kcal Electronic energy + Delta-G solvation = -20862.364328 eV Core-core repulsion = 17545.281764 eV Total energy + Delta-G solvation = -3317.082563 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16302 -40.54812 -38.09134 -36.87397 -34.82391 -33.49047 -32.79462 -31.57674 -28.83512 -28.14153 -26.03038 -25.17862 -23.57786 -22.08945 -21.95299 -21.67160 -20.40009 -19.14206 -17.82148 -17.44542 -17.10636 -16.70701 -16.51344 -16.22603 -15.76120 -15.46626 -15.26868 -15.14136 -14.60585 -14.19789 -14.07302 -13.67552 -13.29945 -13.13649 -12.96440 -12.90888 -12.86831 -12.47357 -12.31724 -12.12246 -11.90396 -11.83795 -11.58078 -11.44357 -11.39366 -11.24269 -11.17571 -10.96527 -10.91664 -10.17832 -9.03333 -7.98164 -5.27691 -0.94611 -0.04932 0.31052 0.52972 1.45473 1.46921 1.57238 2.00446 2.04788 2.54026 2.74752 3.35174 3.56478 3.64744 3.85762 4.01414 4.04337 4.13184 4.33445 4.35606 4.39963 4.59480 4.63645 4.75712 4.86002 4.92390 4.97688 4.99686 5.08444 5.25772 5.31762 5.38750 5.44385 5.51208 5.51996 6.22532 6.25013 6.53681 6.97891 7.30436 8.06690 8.30585 9.25809 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.002628 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.479012 B =10650.072260 C =11978.473398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 H 0.080 0.920 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.073 0.927 11 C -0.077 4.077 12 N -0.970 5.970 13 Si 0.977 3.023 14 H -0.267 1.267 15 H -0.290 1.290 16 H -0.290 1.290 17 N -0.697 5.697 18 C 0.604 3.396 19 O -0.556 6.556 20 C -0.048 4.048 21 C -0.237 4.237 22 S 0.559 5.441 23 N -0.334 5.334 24 N -0.234 5.234 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.374 0.626 37 H 0.253 0.747 38 H 0.414 0.586 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.047 6.970 -26.204 31.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.098 0.902 4 C -0.156 4.156 5 C -0.145 4.145 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.382 4.382 10 H 0.091 0.909 11 C -0.269 4.269 12 N -0.621 5.621 13 Si 0.805 3.195 14 H -0.191 1.191 15 H -0.217 1.217 16 H -0.217 1.217 17 N -0.348 5.348 18 C 0.386 3.614 19 O -0.434 6.434 20 C -0.196 4.196 21 C -0.394 4.394 22 S 0.694 5.306 23 N -0.315 5.315 24 N -0.104 5.104 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.206 0.794 37 H 0.062 0.938 38 H 0.251 0.749 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -14.465 6.178 -26.964 31.216 hybrid contribution 0.454 0.429 1.615 1.732 sum -14.011 6.607 -25.349 29.707 Atomic orbital electron populations 1.22128 0.93783 1.02905 1.02758 1.21151 0.94886 0.97001 0.83128 0.90170 1.21865 0.94660 1.01955 0.97071 1.21437 0.95931 1.00366 0.96718 1.21598 0.93726 1.00873 0.98832 1.20849 0.94296 0.94335 0.88323 1.42638 1.04580 1.65453 1.26519 1.19693 0.85302 1.27783 1.05407 0.90932 1.25626 1.02385 1.01120 0.97774 1.69826 1.34686 1.41980 1.15566 0.85029 0.79701 0.77119 0.77646 1.19138 1.21680 1.21737 1.46026 1.64924 1.14916 1.08891 1.16821 0.77276 0.85321 0.81965 1.90810 1.52067 1.15625 1.84921 1.22651 1.08617 0.90786 0.97518 1.29293 1.03317 1.10608 0.96146 1.81208 1.40740 0.91048 1.17569 1.78345 1.23180 1.28293 1.01645 1.71571 1.11358 1.10715 1.16728 0.91481 0.89827 0.93346 0.90152 0.88708 0.92066 0.92315 0.91982 0.92136 0.96873 0.96685 0.79383 0.93844 0.74870 0.75365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 71.98 0.68 -1.79 16 2 C 0.14 2.62 2.57 44.99 0.12 2.74 16 3 H 0.08 1.71 7.58 -2.39 -0.02 1.69 16 4 C -0.12 -2.15 4.75 30.59 0.15 -2.00 16 5 C -0.11 -2.59 5.10 30.60 0.16 -2.44 16 6 C -0.11 -3.59 5.33 30.60 0.16 -3.42 16 7 C 0.15 6.26 6.26 86.38 0.54 6.80 16 8 N -0.75 -40.21 5.60 -343.46 -1.92 -42.13 16 9 C -0.25 -14.64 9.99 84.03 0.84 -13.80 16 10 H 0.07 4.11 7.83 -2.90 -0.02 4.09 16 11 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 12 N -0.97 -60.82 13.06 21.65 0.28 -60.53 16 13 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 16 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 17 N -0.70 -13.85 4.53 -445.78 -2.02 -15.86 16 18 C 0.60 13.63 7.78 86.67 0.67 14.31 16 19 O -0.56 -15.04 16.46 -4.02 -0.07 -15.11 16 20 C -0.05 -0.93 6.87 41.36 0.28 -0.65 16 21 C -0.24 -2.94 11.21 67.76 0.76 -2.18 16 22 S 0.56 5.22 23.38 -56.49 -1.32 3.90 16 23 N -0.33 -6.36 12.49 37.02 0.46 -5.90 16 24 N -0.23 -5.08 11.24 -50.34 -0.57 -5.64 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.47 7.75 -2.39 -0.02 1.45 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.37 21.04 7.67 -92.70 -0.71 20.33 16 37 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.41 7.73 8.19 -92.71 -0.76 6.97 16 39 H 0.23 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -74.79 349.27 1.31 -73.48 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.40 Total: 25.07 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 4.83 Total: -6.54 kcal Atomic # 7 Polarization: -126.31 SS G_CDS: -3.76 Total: -130.07 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.07 Total: -15.11 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.32 Total: 3.90 kcal Total: -74.79 1.31 -73.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171942826.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.731 kcal (2) G-P(sol) polarization free energy of solvation -74.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds