Wall clock time and date at job start Tue Mar 31 2020 03:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00024 * 2 1 4 4 H 1.48507 * 109.47047 * 239.99674 * 3 2 1 5 5 H 1.48497 * 109.47269 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47539 * 119.99681 * 3 2 1 7 7 C 1.37878 * 119.99695 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.85206 * 0.02562 * 7 2 1 9 9 C 1.53230 * 108.53373 * 231.32267 * 8 7 2 10 10 C 1.52960 * 109.40325 * 305.37070 * 9 8 7 11 11 H 1.09006 * 109.41315 * 303.56042 * 10 9 8 12 12 N 1.46499 * 109.41324 * 183.70740 * 10 9 8 13 13 C 1.34781 * 120.00156 * 154.99984 * 12 10 9 14 14 O 1.21282 * 119.99908 * 359.97438 * 13 12 10 15 15 C 1.50703 * 119.99869 * 179.97438 * 13 12 10 16 16 H 1.08991 * 108.86837 * 318.58574 * 15 13 12 17 17 C 1.52826 * 108.88990 * 77.08368 * 15 13 12 18 18 S 1.82041 * 108.22065 * 172.57275 * 17 15 13 19 19 C 1.81837 * 101.24970 * 298.60479 * 18 17 15 20 20 C 1.50145 * 109.06631 * 44.08352 * 19 18 17 21 21 O 1.21283 * 116.83117 * 159.71387 * 20 19 18 22 22 N 1.31774 * 126.33911 * 339.42009 * 20 19 18 23 23 C 1.52961 * 109.81937 * 63.59993 * 10 9 8 24 24 C 1.51276 * 120.84696 * 179.97438 * 7 2 1 25 25 H 0.96995 * 120.00118 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.62665 * 111.60959 * 8 7 2 27 27 H 1.08990 * 109.62576 * 351.03416 * 8 7 2 28 28 H 1.09002 * 109.48123 * 185.39269 * 9 8 7 29 29 H 1.08998 * 109.48604 * 65.35113 * 9 8 7 30 30 H 0.96999 * 119.99963 * 334.99984 * 12 10 9 31 31 H 1.08992 * 109.71131 * 292.26026 * 17 15 13 32 32 H 1.09005 * 109.71232 * 52.84648 * 17 15 13 33 33 H 1.09003 * 109.54104 * 284.20212 * 19 18 17 34 34 H 1.09004 * 109.54068 * 163.95779 * 19 18 17 35 35 H 0.97004 * 115.07955 * 186.49281 * 22 20 19 36 36 H 1.08996 * 109.47954 * 56.38091 * 23 10 9 37 37 H 1.08999 * 109.48317 * 176.42326 * 23 10 9 38 38 H 1.09001 * 109.62297 * 248.39380 * 24 7 2 39 39 H 1.08998 * 109.62675 * 8.76736 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 1.2677 -2.5152 0.0005 9 6 1.8229 -3.3826 1.1351 10 6 3.3399 -3.5070 0.9839 11 1 3.5739 -3.9112 -0.0010 12 7 3.8599 -4.4075 2.0158 13 6 5.0174 -5.0676 1.8133 14 8 5.6283 -4.9164 0.7766 15 6 5.5525 -5.9935 2.8751 16 1 5.4138 -5.5283 3.8510 17 6 4.7622 -7.3009 2.8356 18 16 5.5609 -8.4833 3.9660 19 6 7.2082 -8.6379 3.2117 20 6 7.7045 -7.2723 2.8334 21 8 8.9008 -7.1487 2.6766 22 7 6.9663 -6.1963 2.6500 23 6 3.9907 -2.1310 1.1350 24 6 3.5171 -1.2165 0.0000 25 1 -0.4850 0.8400 -0.0004 26 1 1.4199 -3.0193 -0.9538 27 1 0.2037 -2.3409 0.1601 28 1 1.3706 -4.3733 1.0900 29 1 1.5899 -2.9197 2.0941 30 1 3.3711 -4.5288 2.8449 31 1 3.7365 -7.1203 3.1569 32 1 4.7646 -7.7015 1.8218 33 1 7.1440 -9.2623 2.3205 34 1 7.8955 -9.0905 3.9265 35 1 7.4442 -5.4223 2.3130 36 1 3.7064 -1.6977 2.0939 37 1 5.0748 -2.2347 1.0898 38 1 3.8771 -1.6006 -0.9545 39 1 3.8983 -0.2073 0.1556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180555102.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:26 Heat of formation + Delta-G solvation = -80.409340 kcal Electronic energy + Delta-G solvation = -22176.889668 eV Core-core repulsion = 18823.973232 eV Total energy + Delta-G solvation = -3352.916436 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87220 -39.56750 -37.15810 -35.76407 -33.99085 -31.95556 -30.85601 -30.45022 -29.78860 -27.48180 -25.31923 -22.52376 -21.66031 -20.80539 -20.19500 -19.68263 -18.28749 -17.35888 -17.14012 -16.55367 -16.04323 -15.74492 -15.45739 -15.04107 -14.54253 -14.40247 -14.14935 -13.66982 -13.41129 -13.19253 -12.88601 -12.73105 -12.35587 -12.21145 -12.17996 -11.77284 -11.20864 -11.15820 -10.90799 -10.79203 -10.50103 -10.28376 -10.13488 -10.00319 -9.84335 -9.46267 -9.14710 -8.99789 -8.57429 -8.52451 -8.29287 -6.19100 -4.10560 0.93793 1.61406 2.22844 2.40474 2.65545 3.22442 3.26255 3.31279 3.32749 3.82041 4.05151 4.31860 4.36280 4.55398 4.60800 4.85509 4.93072 5.08835 5.10866 5.55043 5.71309 6.02602 6.22291 6.26609 6.34322 6.54954 6.57034 6.74659 6.81154 6.91011 6.95407 7.06374 7.31470 7.49941 7.53806 7.61086 7.69027 7.74388 8.15413 8.27886 8.86465 9.45830 10.90435 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.032388 B = 0.003310 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.322983 B = 8457.753333 C = 9040.794714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.493 4.493 8 C 0.013 3.987 9 C -0.114 4.114 10 C 0.153 3.847 11 H 0.080 0.920 12 N -0.713 5.713 13 C 0.499 3.501 14 O -0.526 6.526 15 C 0.126 3.874 16 H 0.111 0.889 17 C -0.097 4.097 18 S -0.219 6.219 19 C -0.105 4.105 20 C 0.527 3.473 21 O -0.544 6.544 22 N -0.692 5.692 23 C -0.114 4.114 24 C -0.009 4.009 25 H 0.266 0.734 26 H 0.006 0.994 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.397 0.603 31 H 0.135 0.865 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.410 0.590 36 H 0.053 0.947 37 H 0.037 0.963 38 H 0.020 0.980 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.032 -14.705 9.094 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.512 4.512 8 C -0.025 4.025 9 C -0.153 4.153 10 C 0.051 3.949 11 H 0.099 0.901 12 N -0.362 5.362 13 C 0.280 3.720 14 O -0.402 6.402 15 C 0.014 3.986 16 H 0.128 0.872 17 C -0.246 4.246 18 S 0.009 5.991 19 C -0.256 4.256 20 C 0.312 3.688 21 O -0.423 6.423 22 N -0.344 5.344 23 C -0.153 4.153 24 C -0.047 4.047 25 H 0.076 0.924 26 H 0.025 0.975 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.231 0.769 31 H 0.153 0.847 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.247 0.753 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.039 0.961 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 7.349 -15.184 9.291 19.259 hybrid contribution 0.663 1.730 -0.697 1.980 sum 8.012 -13.454 8.594 17.862 Atomic orbital electron populations 1.69810 1.06149 1.27212 1.49468 1.24831 0.94731 0.98598 0.94358 0.86652 0.79408 0.82925 0.79079 1.19950 1.21808 1.19985 1.20015 0.89261 0.91502 1.50391 1.19333 0.98790 0.92740 0.91594 1.21946 0.91941 0.98765 1.02602 1.21163 0.94757 0.88872 0.90112 0.90149 1.46418 1.22909 1.45086 1.21814 1.20444 0.82272 0.81207 0.88036 1.90772 1.57818 1.64498 1.27152 1.20873 0.81859 0.95919 0.99936 0.87160 1.23706 1.02856 0.94540 1.03463 1.87339 1.12430 1.59388 1.39966 1.23644 0.97643 0.97511 1.06811 1.19212 0.86792 0.85608 0.77200 1.90839 1.14895 1.84573 1.51963 1.44608 1.08191 1.15353 1.66281 1.21912 0.97245 0.95060 1.01058 1.19592 0.96639 0.94589 0.93848 0.92421 0.97525 0.91956 0.94468 0.92524 0.76910 0.84658 0.87819 0.85785 0.83923 0.75253 0.92825 0.94449 0.96138 0.95523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 12.73 55.43 0.71 -23.86 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 20.71 26.80 -169.99 -4.56 16.15 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.49 -12.33 5.51 -98.92 -0.55 -12.88 16 8 C 0.01 0.31 5.97 -27.48 -0.16 0.14 16 9 C -0.11 -2.08 5.40 -26.63 -0.14 -2.22 16 10 C 0.15 2.64 2.35 -67.97 -0.16 2.48 16 11 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 12 N -0.71 -8.96 5.07 -53.84 -0.27 -9.23 16 13 C 0.50 6.36 6.87 -10.98 -0.08 6.29 16 14 O -0.53 -9.06 15.86 5.56 0.09 -8.97 16 15 C 0.13 1.14 3.33 -70.19 -0.23 0.91 16 16 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.10 -0.72 5.89 37.07 0.22 -0.50 16 18 S -0.22 -1.71 22.40 -107.50 -2.41 -4.12 16 19 C -0.11 -0.85 6.61 35.74 0.24 -0.61 16 20 C 0.53 6.06 7.65 -12.57 -0.10 5.97 16 21 O -0.54 -8.30 17.60 5.56 0.10 -8.21 16 22 N -0.69 -7.62 4.64 -57.16 -0.27 -7.88 16 23 C -0.11 -2.20 5.50 -26.62 -0.15 -2.34 16 24 C -0.01 -0.19 5.60 -27.47 -0.15 -0.35 16 25 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.40 3.70 8.60 -40.82 -0.35 3.35 16 31 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.83 8.13 -51.93 -0.42 0.41 16 33 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.14 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.41 5.07 7.85 -40.82 -0.32 4.74 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.03 0.60 5.17 -51.93 -0.27 0.33 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -31.03 326.68 -8.53 -39.56 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.49 Total: 2.78 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.36 Total: -1.16 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.17 Total: -40.97 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.19 Total: -17.18 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.56 Total: 16.15 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.41 Total: -4.12 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.03 -8.53 -39.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180555102.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.847 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds