Wall clock time and date at job start Tue Mar 31 2020 03:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.77309 * 2 1 4 4 C 1.54328 * 110.84757 * 236.93231 * 2 1 3 5 5 N 1.47023 * 107.26445 * 219.66919 * 4 2 1 6 6 C 1.36939 * 125.64881 * 178.85021 * 5 4 2 7 7 H 1.08001 * 119.99895 * 342.88870 * 6 5 4 8 8 C 1.38813 * 119.99784 * 162.88357 * 6 5 4 9 9 N 1.31614 * 120.00052 * 331.97054 * 8 6 5 10 10 Si 1.86804 * 119.99545 * 151.97110 * 8 6 5 11 11 H 1.48502 * 109.47053 * 269.99759 * 10 8 6 12 12 H 1.48498 * 109.47532 * 30.00140 * 10 8 6 13 13 H 1.48506 * 109.46755 * 150.00175 * 10 8 6 14 14 C 1.47421 * 108.70467 * 358.59038 * 5 4 2 15 15 C 1.54917 * 104.83049 * 24.35070 * 14 5 4 16 16 H 1.09004 * 110.99902 * 81.06437 * 15 14 5 17 17 N 1.46501 * 111.00303 * 204.87799 * 15 14 5 18 18 C 1.34779 * 120.00089 * 273.54569 * 17 15 14 19 19 O 1.21280 * 119.99680 * 0.02562 * 18 17 15 20 20 C 1.50698 * 119.99838 * 180.02562 * 18 17 15 21 21 H 1.09003 * 109.46842 * 344.99938 * 20 18 17 22 22 F 1.39895 * 109.46989 * 105.00120 * 20 18 17 23 23 C 1.52997 * 109.47016 * 225.00140 * 20 18 17 24 24 F 1.39902 * 109.47279 * 59.99877 * 23 20 18 25 25 F 1.39901 * 109.47055 * 179.97438 * 23 20 18 26 26 F 1.39898 * 109.47478 * 300.00200 * 23 20 18 27 27 H 1.08997 * 109.47048 * 296.75953 * 1 2 3 28 28 H 1.08995 * 109.47257 * 56.76209 * 1 2 3 29 29 H 1.09004 * 109.46914 * 176.76159 * 1 2 3 30 30 H 1.09003 * 109.99465 * 100.19914 * 4 2 1 31 31 H 1.08998 * 109.78421 * 339.03158 * 4 2 1 32 32 H 0.96996 * 120.00198 * 353.96158 * 9 8 6 33 33 H 1.08998 * 110.37200 * 143.19182 * 14 5 4 34 34 H 1.09003 * 110.36561 * 265.51689 * 14 5 4 35 35 H 0.96995 * 119.99773 * 93.55436 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0793 -0.7869 -1.2086 5 7 3.2445 -1.5506 -0.7390 6 6 4.0043 -2.3968 -1.5018 7 1 3.6230 -2.7648 -2.4429 8 6 5.2647 -2.7816 -1.0656 9 7 5.9606 -1.9864 -0.2809 10 14 5.9730 -4.4279 -1.5922 11 1 5.5867 -5.4706 -0.6079 12 1 5.4421 -4.7899 -2.9309 13 1 7.4536 -4.3320 -1.6562 14 6 3.4633 -1.2498 0.6875 15 6 2.0790 -0.7954 1.2138 16 1 1.4452 -1.6536 1.4374 17 7 2.2215 0.0688 2.3881 18 6 2.3155 -0.4750 3.6177 19 8 2.2827 -1.6799 3.7519 20 6 2.4615 0.4141 4.8256 21 1 2.7369 1.4191 4.5058 22 9 1.2475 0.4616 5.5191 23 6 3.5510 -0.1459 5.7423 24 9 4.7651 -0.1934 5.0488 25 9 3.6870 0.6798 6.8634 26 9 3.1977 -1.4358 6.1527 27 1 -0.3633 0.4627 0.9176 28 1 -0.3633 0.5632 -0.8595 29 1 -0.3633 -1.0261 -0.0581 30 1 2.3815 -0.0969 -1.9965 31 1 1.3156 -1.4686 -1.5829 32 1 5.6325 -1.0964 -0.0784 33 1 3.7961 -2.1426 1.2169 34 1 4.1932 -0.4478 0.7984 35 1 2.2480 1.0325 2.2806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207022497.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:19 Heat of formation + Delta-G solvation = -234.361837 kcal Electronic energy + Delta-G solvation = -25457.410634 eV Core-core repulsion = 20989.748401 eV Total energy + Delta-G solvation = -4467.662233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.105 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -51.50370 -49.59917 -48.88131 -48.74881 -41.28790 -39.44346 -36.05559 -34.66227 -32.39086 -32.11973 -29.67406 -27.25021 -26.12463 -24.90715 -22.73943 -21.93453 -21.46960 -20.13895 -19.94436 -19.70895 -19.48926 -18.53143 -17.89158 -17.25585 -16.45831 -16.29510 -16.01473 -15.72752 -15.67405 -15.63568 -15.40747 -15.28063 -15.25874 -15.00379 -14.96399 -14.56057 -14.50162 -14.18746 -14.02946 -13.44261 -13.07954 -12.76159 -12.71431 -12.56131 -12.25823 -12.10286 -11.90044 -11.65239 -11.61706 -11.35008 -10.55941 -10.39627 -9.06627 -8.36650 -5.38802 0.70974 1.10262 1.50712 1.54304 1.62510 1.78944 2.21167 2.58181 2.61375 2.68106 3.00819 3.17669 3.28990 3.43353 3.57290 3.64666 3.81903 3.91678 4.26061 4.42682 4.50599 4.77845 4.84644 4.90742 4.95390 5.02880 5.15064 5.26952 5.42736 5.64596 6.07236 6.27575 6.75677 6.86338 7.64880 8.22194 8.95585 Molecular weight = 298.10amu Principal moments of inertia in cm(-1) A = 0.016055 B = 0.005128 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.615134 B = 5458.736396 C = 6723.927298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 H 0.107 0.893 4 C 0.131 3.869 5 N -0.625 5.625 6 C -0.348 4.348 7 H 0.064 0.936 8 C -0.077 4.077 9 N -0.943 5.943 10 Si 1.113 2.887 11 H -0.292 1.292 12 H -0.266 1.266 13 H -0.291 1.291 14 C 0.148 3.852 15 C 0.144 3.856 16 H 0.082 0.918 17 N -0.676 5.676 18 C 0.486 3.514 19 O -0.543 6.543 20 C 0.057 3.943 21 H 0.206 0.794 22 F -0.154 7.154 23 C 0.441 3.559 24 F -0.173 7.173 25 F -0.161 7.161 26 F -0.176 7.176 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.034 0.966 32 H 0.256 0.744 33 H 0.002 0.998 34 H 0.016 0.984 35 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 12.029 9.524 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.108 4.108 3 H 0.125 0.875 4 C 0.006 3.994 5 N -0.353 5.353 6 C -0.477 4.477 7 H 0.082 0.918 8 C -0.274 4.274 9 N -0.585 5.585 10 Si 0.937 3.063 11 H -0.219 1.219 12 H -0.191 1.191 13 H -0.217 1.217 14 C 0.021 3.979 15 C 0.038 3.962 16 H 0.100 0.900 17 N -0.329 5.329 18 C 0.268 3.732 19 O -0.419 6.419 20 C 0.016 3.984 21 H 0.223 0.777 22 F -0.134 7.134 23 C 0.385 3.615 24 F -0.154 7.154 25 F -0.142 7.142 26 F -0.157 7.157 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.021 0.979 34 H 0.034 0.966 35 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -9.610 10.074 9.737 16.990 hybrid contribution -0.671 1.010 -0.047 1.214 sum -10.281 11.084 9.690 17.957 Atomic orbital electron populations 1.21727 0.91326 1.02285 1.03567 1.22390 0.97910 0.99249 0.91214 0.87529 1.21652 0.88797 0.93143 0.95762 1.44678 1.33146 1.51850 1.05588 1.20027 0.98573 1.23299 1.05764 0.91834 1.27094 0.93131 1.07254 0.99896 1.70872 1.37931 1.08511 1.41235 0.82887 0.75122 0.71966 0.76280 1.21893 1.19063 1.21710 1.21635 0.94694 0.96420 0.85156 1.22118 0.95983 0.93699 0.84407 0.90005 1.45581 1.71611 1.11596 1.04129 1.20648 0.78230 0.88815 0.85500 1.90874 1.48658 1.16265 1.86058 1.22810 0.81203 1.05998 0.88353 0.77707 1.93015 1.43376 1.97677 1.79366 1.20616 0.83056 0.76926 0.80888 1.93285 1.46974 1.96250 1.78927 1.93261 1.96059 1.71374 1.53481 1.93273 1.91630 1.39781 1.91026 0.90454 0.90255 0.93395 0.95321 0.94835 0.93328 0.97903 0.96587 0.73372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.16 71.98 0.66 -1.95 16 2 C -0.09 -2.39 3.16 -9.60 -0.03 -2.42 16 3 H 0.11 2.33 8.00 -2.39 -0.02 2.31 16 4 C 0.13 5.02 6.85 86.73 0.59 5.62 16 5 N -0.63 -31.76 3.29 -691.96 -2.28 -34.03 16 6 C -0.35 -20.07 10.02 84.03 0.84 -19.23 16 7 H 0.06 3.62 7.97 -2.91 -0.02 3.59 16 8 C -0.08 -4.56 5.09 84.86 0.43 -4.13 16 9 N -0.94 -59.25 12.93 21.65 0.28 -58.97 16 10 Si 1.11 53.09 30.00 68.60 2.06 55.15 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 14 C 0.15 7.00 4.99 86.86 0.43 7.43 16 15 C 0.14 4.81 2.77 46.38 0.13 4.94 16 16 H 0.08 3.09 7.63 -2.38 -0.02 3.07 16 17 N -0.68 -16.46 5.23 -435.95 -2.28 -18.74 16 18 C 0.49 13.66 6.90 87.66 0.61 14.26 16 19 O -0.54 -21.42 15.35 -3.03 -0.05 -21.46 16 20 C 0.06 1.08 3.78 29.85 0.11 1.19 16 21 H 0.21 1.37 7.99 -2.39 -0.02 1.35 16 22 F -0.15 -3.07 17.03 44.97 0.77 -2.30 16 23 C 0.44 10.76 2.86 71.98 0.21 10.96 16 24 F -0.17 -4.86 17.02 44.97 0.77 -4.09 16 25 F -0.16 -3.35 17.30 44.97 0.78 -2.57 16 26 F -0.18 -5.49 15.95 44.97 0.72 -4.77 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.08 8.07 -2.38 -0.02 1.06 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.03 1.27 7.77 -2.39 -0.02 1.25 16 32 H 0.26 16.11 6.06 -92.71 -0.56 15.54 16 33 H 0.00 0.14 7.95 -2.39 -0.02 0.12 16 34 H 0.02 0.81 6.81 -2.39 -0.02 0.79 16 35 H 0.43 6.05 8.41 -92.71 -0.78 5.28 16 Total: -1.00 -79.44 312.09 5.31 -74.13 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: 0.57 Total: 0.98 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 3.98 Total: 16.67 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.28 Total: -111.74 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.46 kcal Atomic # 9 Polarization: -16.76 SS G_CDS: 3.03 Total: -13.73 kcal Atomic # 14 Polarization: 53.09 SS G_CDS: 2.06 Total: 55.15 kcal Total: -79.44 5.31 -74.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207022497.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.229 kcal (2) G-P(sol) polarization free energy of solvation -79.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds