Wall clock time and date at job start Tue Mar 31 2020 04:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99926 * 2 1 4 4 H 1.48501 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47196 * 300.00232 * 3 2 1 6 6 H 1.48495 * 109.46989 * 60.00247 * 3 2 1 7 7 C 1.37875 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99529 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91711 * 56.10371 * 9 7 2 11 11 C 1.55151 * 111.00641 * 292.19405 * 9 7 2 12 12 C 1.54326 * 102.94313 * 206.42337 * 11 9 7 13 13 N 1.47021 * 107.27002 * 22.19392 * 12 11 9 14 14 C 1.34778 * 125.64744 * 181.08547 * 13 12 11 15 15 O 1.21282 * 119.99926 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99819 * 359.96801 * 14 13 12 17 17 C 1.53004 * 109.46723 * 179.97438 * 16 14 13 18 18 N 1.46507 * 109.47024 * 179.97438 * 17 16 14 19 19 C 1.47088 * 125.56234 * 269.72115 * 18 17 16 20 20 C 1.54087 * 103.77709 * 179.97438 * 19 18 17 21 21 O 1.45709 * 104.00739 * 0.32146 * 20 19 18 22 22 C 1.33764 * 109.47475 * 359.78940 * 21 20 19 23 23 O 1.21512 * 123.07186 * 180.02562 * 22 21 20 24 24 C 1.47421 * 108.70450 * 1.06211 * 13 12 11 25 25 H 0.96999 * 120.00046 * 359.97438 * 1 2 3 26 26 H 0.96708 * 113.99322 * 303.89498 * 10 9 7 27 27 H 1.09000 * 110.72429 * 324.79291 * 11 9 7 28 28 H 1.09003 * 110.71831 * 88.06413 * 11 9 7 29 29 H 1.08996 * 109.88384 * 262.77575 * 12 11 9 30 30 H 1.09002 * 110.00880 * 141.68666 * 12 11 9 31 31 H 1.08995 * 109.47201 * 299.99171 * 16 14 13 32 32 H 1.08996 * 109.47240 * 59.99690 * 16 14 13 33 33 H 1.08995 * 109.47243 * 299.99927 * 17 16 14 34 34 H 1.09003 * 109.47257 * 60.00284 * 17 16 14 35 35 H 1.08998 * 110.56513 * 298.60823 * 19 18 17 36 36 H 1.09002 * 110.56675 * 61.46137 * 19 18 17 37 37 H 1.09008 * 110.70085 * 241.60418 * 20 19 18 38 38 H 1.08997 * 110.34547 * 118.86776 * 20 19 18 39 39 H 1.09002 * 110.36865 * 217.03325 * 24 13 12 40 40 H 1.09001 * 110.37117 * 94.70643 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3509 -2.5684 -1.1082 11 6 0.4997 -2.7074 1.3408 12 6 0.3981 -4.2438 1.4450 13 7 1.4591 -4.8098 0.5991 14 6 1.6918 -6.1230 0.4044 15 8 2.5989 -6.4774 -0.3184 16 6 0.8249 -7.1508 1.0849 17 6 1.2978 -8.5535 0.6979 18 7 0.4554 -9.5528 1.3599 19 6 0.7114 -10.1479 2.6804 20 6 -0.4690 -11.1178 2.8809 21 8 -1.2539 -10.9749 1.6616 22 6 -0.6703 -10.0788 0.8580 23 8 -1.1201 -9.7696 -0.2276 24 6 2.2259 -3.7031 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 -0.2788 -1.8355 -1.1497 27 1 1.0755 -2.3016 2.1726 28 1 -0.4922 -2.2572 1.3011 29 1 -0.5769 -4.5759 1.0886 30 1 0.5412 -4.5578 2.4790 31 1 0.8963 -7.0283 2.1656 32 1 -0.2106 -7.0175 0.7717 33 1 1.2261 -8.6758 -0.3828 34 1 2.3333 -8.6871 1.0108 35 1 1.6573 -10.6895 2.6795 36 1 0.7098 -9.3794 3.4535 37 1 -1.0596 -10.8314 3.7512 38 1 -0.1060 -12.1403 2.9840 39 1 2.5186 -3.9536 -1.0209 40 1 3.1054 -3.4794 0.6027 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261499235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:18 Heat of formation + Delta-G solvation = -174.440468 kcal Electronic energy + Delta-G solvation = -24478.064568 eV Core-core repulsion = 20678.317765 eV Total energy + Delta-G solvation = -3799.746803 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.54928 -41.07770 -39.07125 -38.35117 -36.86611 -36.11453 -34.14509 -32.97305 -31.50170 -30.33312 -29.85003 -27.34059 -25.63874 -24.47105 -23.74413 -21.98631 -21.50037 -20.23224 -19.19810 -18.70787 -18.18076 -17.93070 -17.63683 -17.01641 -16.91824 -16.58684 -16.10764 -15.87647 -15.39847 -15.05682 -14.95868 -14.65815 -14.51597 -14.39969 -13.87533 -13.61638 -13.50997 -13.22765 -13.13590 -13.10050 -13.04868 -12.63440 -12.48819 -12.30718 -12.25162 -11.88873 -11.79679 -11.63318 -11.30785 -11.00545 -10.64907 -10.16216 -9.99507 -9.59373 -8.25640 -6.40316 1.31515 1.41120 1.45897 1.55430 1.57509 1.58210 2.10332 2.39979 2.63463 2.99425 3.38845 3.55974 3.64609 3.78647 3.85886 4.02409 4.07738 4.17693 4.34360 4.36040 4.40306 4.55871 4.60550 4.63628 4.70979 4.78349 4.86699 4.88601 4.94674 5.17273 5.25517 5.32631 5.43685 5.52504 5.77234 6.04892 6.32282 6.59115 6.64962 6.88288 7.09915 7.31219 7.44183 8.80853 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.036056 B = 0.002951 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.390874 B = 9485.195994 C = 9600.260741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.034 3.966 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.559 4.559 8 H 0.058 0.942 9 C 0.230 3.770 10 O -0.598 6.598 11 C -0.130 4.130 12 C 0.107 3.893 13 N -0.610 5.610 14 C 0.523 3.477 15 O -0.591 6.591 16 C -0.139 4.139 17 C 0.169 3.831 18 N -0.624 5.624 19 C 0.059 3.941 20 C 0.035 3.965 21 O -0.348 6.348 22 C 0.635 3.365 23 O -0.580 6.580 24 C 0.124 3.876 25 H 0.272 0.728 26 H 0.381 0.619 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.043 0.957 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 -17.654 14.358 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.167 4.167 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.597 4.597 8 H 0.076 0.924 9 C 0.190 3.810 10 O -0.408 6.408 11 C -0.169 4.169 12 C -0.015 4.015 13 N -0.342 5.342 14 C 0.313 3.687 15 O -0.472 6.472 16 C -0.179 4.179 17 C 0.048 3.952 18 N -0.371 5.371 19 C -0.062 4.062 20 C -0.038 4.038 21 O -0.258 6.258 22 C 0.390 3.610 23 O -0.469 6.469 24 C 0.002 3.998 25 H 0.082 0.918 26 H 0.232 0.768 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.151 0.849 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.062 0.938 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.727 -18.345 13.307 22.675 hybrid contribution -0.033 1.815 -0.388 1.856 sum 0.693 -16.530 12.919 20.991 Atomic orbital electron populations 1.69634 1.06775 1.28422 1.50271 1.25646 0.95830 1.02198 0.93043 0.85434 0.78864 0.79122 0.77722 1.19624 1.20904 1.19948 1.21740 0.93714 0.91536 1.52715 0.92352 1.19848 0.86482 0.91041 0.83659 1.86101 1.51198 1.52545 1.50993 1.22994 1.01664 0.92698 0.99554 1.22204 0.89916 0.94552 0.94848 1.48691 1.33152 1.05027 1.47372 1.20698 0.84621 0.82092 0.81250 1.90659 1.35020 1.80519 1.41051 1.21938 0.99596 0.92675 1.03740 1.20893 0.93828 0.83388 0.97140 1.48130 1.24722 1.42924 1.21313 1.23286 1.00835 0.98146 0.83976 1.24832 0.90984 1.03193 0.84779 1.87256 1.49825 1.56643 1.32089 1.18754 0.80356 0.78232 0.83662 1.91026 1.69195 1.65570 1.21130 1.22159 0.94733 0.85908 0.97035 0.91844 0.76776 0.91170 0.91306 0.91689 0.88360 0.84853 0.89251 0.91811 0.86584 0.86313 0.86151 0.84875 0.84976 0.93822 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.49 10.79 21.45 0.23 -46.26 16 2 C 0.03 1.70 5.30 84.65 0.45 2.15 16 3 Si 0.96 40.66 29.54 68.60 2.03 42.68 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.56 -28.93 8.25 25.60 0.21 -28.72 16 8 H 0.06 3.02 7.77 -2.91 -0.02 3.00 16 9 C 0.23 11.09 0.89 -10.15 -0.01 11.08 16 10 O -0.60 -31.63 13.18 -148.98 -1.96 -33.59 16 11 C -0.13 -5.33 5.64 31.78 0.18 -5.15 16 12 C 0.11 3.47 6.49 86.73 0.56 4.04 16 13 N -0.61 -22.85 3.33 -811.78 -2.70 -25.55 16 14 C 0.52 18.18 7.85 87.66 0.69 18.87 16 15 O -0.59 -24.56 16.24 -3.04 -0.05 -24.61 16 16 C -0.14 -3.30 5.22 29.85 0.16 -3.15 16 17 C 0.17 3.79 5.30 86.38 0.46 4.25 16 18 N -0.62 -11.60 2.96 -951.46 -2.82 -14.42 16 19 C 0.06 0.36 7.69 86.63 0.67 1.02 16 20 C 0.04 0.21 8.23 72.35 0.60 0.80 16 21 O -0.35 -7.14 11.09 -47.25 -0.52 -7.67 16 22 C 0.64 16.97 8.85 129.91 1.15 18.12 16 23 O -0.58 -22.12 17.54 19.65 0.34 -21.78 16 24 C 0.12 5.54 6.08 86.86 0.53 6.07 16 25 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 26 H 0.38 20.36 6.93 -74.05 -0.51 19.85 16 27 H 0.07 2.80 8.03 -2.39 -0.02 2.79 16 28 H 0.07 3.00 7.85 -2.39 -0.02 2.98 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.06 1.89 7.88 -2.39 -0.02 1.87 16 34 H 0.12 2.11 8.10 -2.39 -0.02 2.09 16 35 H 0.12 0.19 8.14 -2.39 -0.02 0.18 16 36 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.13 0.08 8.14 -2.38 -0.02 0.06 16 38 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.04 2.14 8.04 -2.39 -0.02 2.12 16 40 H 0.08 3.31 8.01 -2.39 -0.02 3.29 16 Total: -1.00 -75.32 337.82 0.72 -74.60 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.54 Total: 27.21 kcal Atomic # 6 Polarization: 23.74 SS G_CDS: 5.63 Total: 29.37 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -5.29 Total: -86.23 kcal Atomic # 8 Polarization: -85.45 SS G_CDS: -2.19 Total: -87.64 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.68 kcal Total: -75.32 0.72 -74.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261499235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.840 kcal (2) G-P(sol) polarization free energy of solvation -75.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds