Wall clock time and date at job start Tue Mar 31 2020 04:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99757 * 2 1 4 4 H 1.48497 * 109.47082 * 269.99650 * 3 2 1 5 5 H 1.48499 * 109.47325 * 29.99615 * 3 2 1 6 6 H 1.48500 * 109.47301 * 150.00134 * 3 2 1 7 7 C 1.37874 * 120.00450 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00429 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47594 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47460 * 180.02562 * 10 9 7 12 12 C 1.34263 * 119.38095 * 89.99835 * 11 10 9 13 13 O 1.21281 * 118.97365 * 1.99085 * 12 11 10 14 14 C 1.50279 * 122.05855 * 181.96909 * 12 11 10 15 15 O 1.42825 * 110.49741 * 341.60545 * 14 12 11 16 16 C 1.43385 * 113.34170 * 51.29962 * 15 14 12 17 17 C 1.45915 * 119.38030 * 269.98188 * 11 10 9 18 18 C 1.53485 * 113.81349 * 32.93209 * 17 11 10 19 19 N 1.47664 * 85.99302 * 222.05355 * 18 17 11 20 20 C 1.34776 * 134.45952 * 204.35590 * 19 18 17 21 21 O 1.21284 * 119.99955 * 179.97438 * 20 19 18 22 22 C 1.50697 * 120.00142 * 359.95035 * 20 19 18 23 23 O 1.42901 * 109.47334 * 179.97438 * 22 20 19 24 24 C 1.47669 * 91.08256 * 24.32161 * 19 18 17 25 25 H 0.97000 * 120.00222 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46793 * 60.00017 * 9 7 2 27 27 H 1.09004 * 109.46984 * 300.00516 * 9 7 2 28 28 H 1.09003 * 109.46973 * 60.00205 * 10 9 7 29 29 H 1.08999 * 109.47074 * 300.00608 * 10 9 7 30 30 H 1.08996 * 109.27243 * 221.34776 * 14 12 11 31 31 H 1.08999 * 109.27342 * 101.87112 * 14 12 11 32 32 H 1.09005 * 109.70838 * 54.06629 * 16 15 14 33 33 H 1.08995 * 109.71099 * 174.69098 * 16 15 14 34 34 H 1.09003 * 113.78999 * 336.32511 * 18 17 11 35 35 H 1.09005 * 113.78855 * 107.78179 * 18 17 11 36 36 H 1.09001 * 109.47093 * 300.00092 * 22 20 19 37 37 H 1.09001 * 109.47041 * 59.99831 * 22 20 19 38 38 H 0.96697 * 114.00102 * 179.97438 * 23 22 20 39 39 H 1.09005 * 113.78970 * 221.41877 * 24 19 18 40 40 H 1.08995 * 113.78917 * 89.94628 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 1.1831 -5.5015 -1.1677 13 8 1.5324 -4.9694 -2.2001 14 6 0.3949 -6.7791 -1.2378 15 8 0.4428 -7.4655 0.0138 16 6 0.0913 -6.6369 1.1300 17 6 1.1559 -5.5508 1.2737 18 6 0.8570 -4.5430 2.3921 19 7 1.6297 -5.4449 3.2696 20 6 1.6525 -5.6798 4.5966 21 8 2.4150 -6.5050 5.0533 22 6 0.7310 -4.9168 5.5128 23 8 0.9413 -5.3410 6.8611 24 6 2.3668 -5.9870 2.1105 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8727 -3.6039 0.8910 29 1 2.8714 -3.6047 -0.8890 30 1 0.8142 -7.4183 -2.0147 31 1 -0.6420 -6.5492 -1.4826 32 1 -0.8814 -6.1771 0.9545 33 1 0.0555 -7.2389 2.0379 34 1 1.3232 -3.5692 2.2426 35 1 -0.1994 -4.4752 2.6521 36 1 0.9386 -3.8499 5.4307 37 1 -0.3039 -5.1085 5.2292 38 1 0.3805 -4.8904 7.5073 39 1 2.5103 -7.0669 2.1466 40 1 3.2815 -5.4422 1.8774 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270424585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:30 Heat of formation + Delta-G solvation = -110.354012 kcal Electronic energy + Delta-G solvation = -25341.105969 eV Core-core repulsion = 21544.138164 eV Total energy + Delta-G solvation = -3796.967805 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.51378 -39.59598 -38.16155 -37.42166 -36.37197 -34.84035 -33.07424 -30.81136 -29.95583 -28.71020 -27.42227 -26.32345 -25.90107 -24.34144 -21.99913 -21.26274 -19.20324 -18.39237 -18.17349 -17.89121 -16.87953 -16.59809 -16.24524 -16.11403 -15.94744 -15.35642 -15.22427 -14.68718 -14.48503 -14.20770 -13.88935 -13.49473 -13.41847 -13.14424 -12.91473 -12.50047 -12.37134 -12.30098 -11.94710 -11.67851 -11.53783 -11.13044 -11.01513 -10.81711 -10.52083 -10.44570 -10.08282 -10.02242 -9.86701 -9.45326 -9.20645 -8.77530 -8.48272 -8.33309 -6.14733 -4.18065 2.35438 2.50799 2.69152 3.10066 3.24415 3.31345 3.34119 3.52694 3.93001 4.17044 4.28400 4.36458 4.49819 4.55369 4.63393 4.92888 5.01207 5.04491 5.22070 5.22820 5.24527 5.27720 5.43118 5.49038 5.49641 5.60012 5.82657 5.87832 6.34254 6.47861 6.63175 6.70700 7.27523 7.35339 7.50738 7.55009 7.71089 7.83749 8.05158 8.18794 8.32830 8.87881 9.47041 10.96318 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.005786 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.492571 B = 4838.348395 C = 6881.642789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.012 3.988 10 C 0.109 3.891 11 N -0.585 5.585 12 C 0.485 3.515 13 O -0.529 6.529 14 C 0.047 3.953 15 O -0.367 6.367 16 C 0.075 3.925 17 C 0.103 3.897 18 C 0.093 3.907 19 N -0.644 5.644 20 C 0.539 3.461 21 O -0.523 6.523 22 C 0.064 3.936 23 O -0.550 6.550 24 C 0.109 3.891 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.021 0.979 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.386 0.614 39 H 0.092 0.908 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 -11.619 6.742 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.025 4.025 10 C -0.011 4.011 11 N -0.318 5.318 12 C 0.272 3.728 13 O -0.406 6.406 14 C -0.033 4.033 15 O -0.285 6.285 16 C -0.002 4.002 17 C 0.014 3.986 18 C -0.030 4.030 19 N -0.383 5.383 20 C 0.328 3.672 21 O -0.398 6.398 22 C -0.017 4.017 23 O -0.355 6.355 24 C -0.014 4.014 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.147 0.853 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.234 0.766 39 H 0.110 0.890 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.742 -12.295 6.401 14.130 hybrid contribution -0.128 1.885 0.223 1.902 sum -2.870 -10.410 6.624 12.669 Atomic orbital electron populations 1.69949 1.06063 1.26827 1.50277 1.24964 0.94840 0.99277 0.94957 0.86573 0.79805 0.83216 0.78309 1.20523 1.21189 1.19809 1.21061 0.93090 0.90548 1.51490 0.92475 1.19489 0.94308 0.90925 0.97824 1.22021 0.95856 0.81208 1.02035 1.47741 1.56377 1.23925 1.03719 1.20959 0.80903 0.87038 0.83866 1.90768 1.53199 1.64011 1.32583 1.22842 1.00851 0.91976 0.87624 1.88152 1.89892 1.36041 1.14406 1.22719 0.95274 0.91285 0.90939 1.22603 0.96680 0.94772 0.84534 1.24014 0.98437 0.96028 0.84515 1.49772 1.41840 1.42239 1.04440 1.19922 0.83862 0.83206 0.80246 1.90731 1.40317 1.34535 1.74221 1.21771 0.98205 0.98242 0.83450 1.86552 1.66380 1.67324 1.15250 1.23579 0.96157 1.01217 0.80485 0.92865 0.95880 0.96137 0.91643 0.90102 0.85324 0.89317 0.90794 0.86578 0.85953 0.88948 0.90057 0.90437 0.76632 0.88990 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -13.75 9.11 -34.44 -0.31 -14.07 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.01 0.29 4.93 -27.88 -0.14 0.15 16 10 C 0.11 2.07 4.43 -4.05 -0.02 2.05 16 11 N -0.59 -9.32 2.66 -162.64 -0.43 -9.75 16 12 C 0.49 8.03 7.64 -11.42 -0.09 7.94 16 13 O -0.53 -11.00 16.45 5.56 0.09 -10.91 16 14 C 0.05 0.56 6.94 35.80 0.25 0.80 16 15 O -0.37 -4.28 10.84 -35.23 -0.38 -4.66 16 16 C 0.08 0.78 5.99 37.04 0.22 1.00 16 17 C 0.10 1.29 1.50 -135.75 -0.20 1.08 16 18 C 0.09 1.13 6.80 -3.16 -0.02 1.11 16 19 N -0.64 -8.11 3.49 -180.41 -0.63 -8.74 16 20 C 0.54 7.59 8.13 -10.99 -0.09 7.50 16 21 O -0.52 -9.67 17.23 -14.36 -0.25 -9.92 16 22 C 0.06 0.66 7.27 36.00 0.26 0.92 16 23 O -0.55 -6.12 13.19 -55.14 -0.73 -6.85 16 24 C 0.11 1.38 7.86 -3.14 -0.02 1.35 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.02 0.47 6.02 -51.93 -0.31 0.16 16 28 H 0.07 1.14 6.32 -51.93 -0.33 0.81 16 29 H 0.08 1.70 7.29 -51.93 -0.38 1.32 16 30 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.12 1.05 7.97 -51.93 -0.41 0.64 16 34 H 0.12 1.80 5.01 -51.93 -0.26 1.54 16 35 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.39 2.01 9.12 45.56 0.42 2.43 16 39 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 40 H 0.09 1.23 7.22 -51.93 -0.38 0.85 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -35.80 334.08 -6.41 -42.21 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.57 Total: 0.91 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -0.26 Total: 11.42 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.32 Total: -42.93 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.27 Total: -32.34 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.80 -6.41 -42.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270424585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.147 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds