Wall clock time and date at job start Tue Mar 31 2020 03:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99741 * 2 1 4 4 C 1.50702 * 109.46920 * 180.02562 * 3 2 1 5 5 C 1.35284 * 126.65636 * 90.32933 * 4 3 2 6 6 C 1.42336 * 103.92347 * 180.10457 * 5 4 3 7 7 C 1.48167 * 126.94710 * 179.85194 * 6 5 4 8 8 O 1.21547 * 120.00019 * 354.42226 * 7 6 5 9 9 N 1.34770 * 119.99786 * 174.41743 * 7 6 5 10 10 C 1.36780 * 120.00071 * 5.20776 * 9 7 6 11 11 H 1.07998 * 120.00343 * 319.48389 * 10 9 7 12 12 C 1.39123 * 119.99721 * 139.48284 * 10 9 7 13 13 N 1.31322 * 119.99851 * 166.24665 * 12 10 9 14 14 Si 1.86798 * 120.00097 * 346.24121 * 12 10 9 15 15 H 1.48499 * 109.46806 * 92.16888 * 14 12 10 16 16 H 1.48497 * 109.47406 * 212.16759 * 14 12 10 17 17 H 1.48495 * 109.47110 * 332.17259 * 14 12 10 18 18 C 1.46505 * 119.99878 * 185.20741 * 9 7 6 19 19 C 1.50697 * 109.46970 * 84.81774 * 18 9 7 20 20 O 1.20830 * 120.00103 * 359.97438 * 19 18 9 21 21 O 1.34229 * 120.00156 * 180.02562 * 19 18 9 22 22 C 1.45202 * 117.00306 * 179.97438 * 21 19 18 23 23 N 1.31074 * 106.10374 * 359.59361 * 6 5 4 24 24 O 1.20911 * 111.41501 * 0.26289 * 23 6 5 25 25 H 1.08991 * 109.47128 * 60.00377 * 1 2 3 26 26 H 1.09003 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46772 * 300.00028 * 1 2 3 28 28 H 1.08996 * 109.47284 * 60.00336 * 3 2 1 29 29 H 1.08999 * 109.47035 * 299.99663 * 3 2 1 30 30 H 1.07992 * 128.03467 * 359.96269 * 5 4 3 31 31 H 0.96997 * 119.99793 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.47187 * 204.81333 * 18 9 7 33 33 H 1.08997 * 109.46837 * 324.81376 * 18 9 7 34 34 H 1.09003 * 109.46911 * 180.02562 * 22 21 19 35 35 H 1.09000 * 109.46689 * 299.99266 * 22 21 19 36 36 H 1.08998 * 109.47229 * 59.99652 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.3177 1.1292 -1.0862 6 6 5.6261 1.0198 -0.5368 7 6 6.9009 0.9191 -1.2853 8 8 6.8882 0.8231 -2.4969 9 7 8.0743 0.9341 -0.6227 10 6 8.0875 0.9347 0.7450 11 1 7.3741 1.5336 1.2917 12 6 9.0199 0.1639 1.4320 13 7 9.2179 0.3618 2.7150 14 14 9.9901 -1.1527 0.5293 15 1 11.2671 -0.5763 0.0370 16 1 10.2790 -2.2770 1.4553 17 1 9.1956 -1.6511 -0.6219 18 6 9.3359 0.9498 -1.3675 19 6 9.6853 2.3692 -1.7338 20 8 8.9553 3.2747 -1.4068 21 8 10.8071 2.6274 -2.4242 22 6 11.0799 4.0175 -2.7427 23 7 5.4759 1.0317 0.7653 24 8 4.3106 1.1236 1.0743 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 4.0334 1.1573 -2.1277 31 1 9.8682 -0.1754 3.1939 32 1 10.1283 0.5287 -0.7487 33 1 9.2293 0.3559 -2.2752 34 1 12.0135 4.0858 -3.3012 35 1 10.2657 4.4184 -3.3464 36 1 11.1651 4.5917 -1.8202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318728951.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:41 Heat of formation + Delta-G solvation = -63.877720 kcal Electronic energy + Delta-G solvation = -24459.412467 eV Core-core repulsion = 20528.626930 eV Total energy + Delta-G solvation = -3930.785537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.38764 -40.10531 -38.65635 -38.00302 -36.01091 -35.03284 -33.37457 -32.23153 -32.09411 -29.08566 -27.66792 -26.77881 -25.61674 -25.25034 -23.42760 -21.92740 -20.89365 -19.09518 -18.05888 -17.43895 -17.29541 -16.74342 -16.44946 -16.20392 -15.91824 -15.88551 -15.58370 -15.29614 -14.66472 -14.13208 -13.93756 -13.39035 -13.23896 -13.03739 -12.87859 -12.64770 -12.37362 -12.14876 -11.93210 -11.66141 -11.62197 -11.17901 -10.86539 -10.51141 -10.41141 -10.04904 -9.95748 -9.85923 -9.72913 -9.53072 -9.08891 -9.02356 -8.07147 -6.53243 -4.20268 1.74773 2.15339 2.75539 2.92398 3.01560 3.14497 3.16618 3.28627 3.85845 3.97595 4.07444 4.09797 4.72472 4.80708 4.98012 5.03443 5.16808 5.19679 5.30141 5.34976 5.39236 5.40037 5.49152 5.54749 5.57475 5.72974 5.76515 5.88637 6.00614 6.39009 6.75646 6.90693 7.04062 7.86541 8.25697 8.32566 8.61881 8.89242 9.12474 9.34933 10.55977 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.004881 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.993649 B = 5735.202792 C = 6721.613317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.151 3.849 4 C -0.070 4.070 5 C -0.159 4.159 6 C -0.006 4.006 7 C 0.563 3.437 8 O -0.580 6.580 9 N -0.429 5.429 10 C -0.338 4.338 11 H 0.131 0.869 12 C 0.068 3.932 13 N -0.847 5.847 14 Si 0.863 3.137 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.256 1.256 18 C 0.105 3.895 19 C 0.451 3.549 20 O -0.489 6.489 21 O -0.367 6.367 22 C 0.036 3.964 23 N -0.273 5.273 24 O 0.118 5.882 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.173 0.827 31 H 0.278 0.722 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 2.065 -6.206 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.074 3.926 4 C -0.133 4.133 5 C -0.181 4.181 6 C -0.165 4.165 7 C 0.353 3.647 8 O -0.463 6.463 9 N -0.149 5.149 10 C -0.466 4.466 11 H 0.148 0.852 12 C -0.141 4.141 13 N -0.481 5.481 14 Si 0.690 3.310 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.179 1.179 18 C -0.020 4.020 19 C 0.291 3.709 20 O -0.374 6.374 21 O -0.284 6.284 22 C -0.058 4.058 23 N 0.028 4.972 24 O 0.040 5.960 25 H 0.062 0.938 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.191 0.809 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.455 2.040 -5.532 9.505 hybrid contribution 0.205 -0.159 -0.926 0.962 sum -7.250 1.880 -6.458 9.890 Atomic orbital electron populations 1.22775 0.80419 1.03117 1.00151 1.88011 1.19946 1.26893 1.95481 1.20550 0.83985 0.85614 1.02478 1.23738 0.94586 1.08108 0.86839 1.22347 0.90421 1.04621 1.00753 1.23161 0.95891 1.07651 0.89755 1.16896 0.81845 0.80342 0.85635 1.90649 1.86888 1.55532 1.13235 1.43213 1.01549 1.62954 1.07203 1.19637 1.21361 1.28117 0.77531 0.85172 1.25424 0.96743 0.96451 0.95447 1.69624 1.32360 1.37780 1.08367 0.87162 0.80400 0.82612 0.80857 1.19322 1.20448 1.17945 1.21478 0.90254 0.90490 0.99785 1.24570 0.78322 0.93556 0.74409 1.90629 1.49810 1.47084 1.49861 1.86514 1.42994 1.30537 1.68343 1.23161 1.01507 0.80025 1.01083 1.74887 0.94161 1.12575 1.15588 1.84939 1.12391 1.65336 1.33346 0.93826 0.89358 0.93721 0.90803 0.89999 0.80918 0.91098 0.87089 0.86606 0.88584 0.92257 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.86 10.69 -35.23 -0.38 -5.24 16 3 C 0.15 1.74 6.50 36.01 0.23 1.97 16 4 C -0.07 -1.15 7.10 -35.36 -0.25 -1.41 16 5 C -0.16 -2.95 10.93 -39.06 -0.43 -3.37 16 6 C -0.01 -0.15 6.91 -82.54 -0.57 -0.72 16 7 C 0.56 14.31 7.47 -12.19 -0.09 14.21 16 8 O -0.58 -14.92 16.59 5.32 0.09 -14.83 16 9 N -0.43 -11.02 1.71 -117.06 -0.20 -11.22 16 10 C -0.34 -9.32 8.59 -15.02 -0.13 -9.45 16 11 H 0.13 3.88 5.96 -52.49 -0.31 3.57 16 12 C 0.07 1.83 5.40 -17.44 -0.09 1.74 16 13 N -0.85 -23.69 13.95 55.50 0.77 -22.92 16 14 Si 0.86 19.76 24.73 -169.99 -4.20 15.56 16 15 H -0.27 -5.65 6.66 56.52 0.38 -5.27 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.26 -5.83 7.06 56.52 0.40 -5.43 16 18 C 0.10 2.38 4.48 -5.19 -0.02 2.35 16 19 C 0.45 10.02 7.99 36.00 0.29 10.31 16 20 O -0.49 -12.17 16.06 -18.75 -0.30 -12.47 16 21 O -0.37 -6.79 10.57 -39.26 -0.41 -7.21 16 22 C 0.04 0.52 10.56 101.05 1.07 1.58 16 23 N -0.27 -6.40 8.92 33.30 0.30 -6.11 16 24 O 0.12 2.33 11.18 17.20 0.19 2.52 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 31 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.11 2.47 3.21 -51.93 -0.17 2.31 16 33 H 0.12 2.41 7.51 -51.93 -0.39 2.02 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 36 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -34.11 320.32 -2.04 -36.15 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -3.84 Total: 2.36 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 1.11 Total: 18.59 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.87 Total: -40.25 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.81 Total: -37.23 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.20 Total: 15.56 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.11 -2.04 -36.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318728951.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.732 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds