Wall clock time and date at job start Tue Mar 31 2020 03:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99741 * 2 1 4 4 C 1.50702 * 109.46920 * 180.02562 * 3 2 1 5 5 C 1.35284 * 126.65636 * 90.32933 * 4 3 2 6 6 C 1.42336 * 103.92347 * 180.10457 * 5 4 3 7 7 C 1.48167 * 126.94710 * 179.85194 * 6 5 4 8 8 O 1.21547 * 120.00019 * 354.42226 * 7 6 5 9 9 N 1.34770 * 119.99786 * 174.41743 * 7 6 5 10 10 C 1.36780 * 120.00071 * 5.20776 * 9 7 6 11 11 H 1.07998 * 120.00343 * 319.48389 * 10 9 7 12 12 C 1.39123 * 119.99721 * 139.48284 * 10 9 7 13 13 N 1.31322 * 119.99851 * 166.24665 * 12 10 9 14 14 Si 1.86798 * 120.00097 * 346.24121 * 12 10 9 15 15 H 1.48499 * 109.46806 * 92.16888 * 14 12 10 16 16 H 1.48497 * 109.47406 * 212.16759 * 14 12 10 17 17 H 1.48495 * 109.47110 * 332.17259 * 14 12 10 18 18 C 1.46505 * 119.99878 * 185.20741 * 9 7 6 19 19 C 1.50697 * 109.46970 * 84.81774 * 18 9 7 20 20 O 1.20830 * 120.00103 * 359.97438 * 19 18 9 21 21 O 1.34229 * 120.00156 * 180.02562 * 19 18 9 22 22 C 1.45202 * 117.00306 * 179.97438 * 21 19 18 23 23 N 1.31074 * 106.10374 * 359.59361 * 6 5 4 24 24 O 1.20911 * 111.41501 * 0.26289 * 23 6 5 25 25 H 1.08991 * 109.47128 * 60.00377 * 1 2 3 26 26 H 1.09003 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46772 * 300.00028 * 1 2 3 28 28 H 1.08996 * 109.47284 * 60.00336 * 3 2 1 29 29 H 1.08999 * 109.47035 * 299.99663 * 3 2 1 30 30 H 1.07992 * 128.03467 * 359.96269 * 5 4 3 31 31 H 0.96997 * 119.99793 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.47187 * 204.81333 * 18 9 7 33 33 H 1.08997 * 109.46837 * 324.81376 * 18 9 7 34 34 H 1.09003 * 109.46911 * 180.02562 * 22 21 19 35 35 H 1.09000 * 109.46689 * 299.99266 * 22 21 19 36 36 H 1.08998 * 109.47229 * 59.99652 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.3177 1.1292 -1.0862 6 6 5.6261 1.0198 -0.5368 7 6 6.9009 0.9191 -1.2853 8 8 6.8882 0.8231 -2.4969 9 7 8.0743 0.9341 -0.6227 10 6 8.0875 0.9347 0.7450 11 1 7.3741 1.5336 1.2917 12 6 9.0199 0.1639 1.4320 13 7 9.2179 0.3618 2.7150 14 14 9.9901 -1.1527 0.5293 15 1 11.2671 -0.5763 0.0370 16 1 10.2790 -2.2770 1.4553 17 1 9.1956 -1.6511 -0.6219 18 6 9.3359 0.9498 -1.3675 19 6 9.6853 2.3692 -1.7338 20 8 8.9553 3.2747 -1.4068 21 8 10.8071 2.6274 -2.4242 22 6 11.0799 4.0175 -2.7427 23 7 5.4759 1.0317 0.7653 24 8 4.3106 1.1236 1.0743 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 4.0334 1.1573 -2.1277 31 1 9.8682 -0.1754 3.1939 32 1 10.1283 0.5287 -0.7487 33 1 9.2293 0.3559 -2.2752 34 1 12.0135 4.0858 -3.3012 35 1 10.2657 4.4184 -3.3464 36 1 11.1651 4.5917 -1.8202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318728951.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:40 Heat of formation + Delta-G solvation = -88.893468 kcal Electronic energy + Delta-G solvation = -24460.497231 eV Core-core repulsion = 20528.626930 eV Total energy + Delta-G solvation = -3931.870301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.109 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.02142 -41.83778 -40.48441 -38.85892 -37.69954 -36.94387 -34.96295 -34.14531 -33.62193 -30.75630 -28.62446 -28.15650 -27.29119 -26.43323 -25.13071 -23.51611 -22.53981 -20.95083 -19.73363 -19.13107 -18.82751 -18.35862 -18.12524 -17.53502 -17.22364 -17.14255 -17.12550 -16.64606 -16.25307 -15.82607 -15.58073 -14.89207 -14.75930 -14.64912 -14.47425 -14.17091 -13.74260 -13.62816 -13.18502 -13.06054 -12.97950 -12.53069 -12.34703 -12.22870 -11.89805 -11.87463 -11.74825 -11.45016 -11.35889 -10.96341 -10.65735 -10.56582 -10.05633 -8.56067 -6.29460 0.21635 0.58901 1.01810 1.12072 1.28978 1.36189 1.45149 1.99131 2.07788 2.16764 2.27509 2.85676 3.09866 3.23990 3.61222 3.76586 3.80023 3.97936 4.02300 4.16158 4.25335 4.27732 4.27904 4.51389 4.59776 4.61559 4.61941 4.70775 4.93967 4.96404 5.08676 5.20142 5.89385 6.16553 6.17655 6.60504 6.69939 7.03615 7.29678 7.38227 8.57040 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.004881 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.993649 B = 5735.202792 C = 6721.613317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.152 3.848 4 C -0.047 4.047 5 C -0.165 4.165 6 C -0.045 4.045 7 C 0.556 3.444 8 O -0.591 6.591 9 N -0.440 5.440 10 C -0.347 4.347 11 H 0.097 0.903 12 C 0.026 3.974 13 N -0.889 5.889 14 Si 0.917 3.083 15 H -0.234 1.234 16 H -0.273 1.273 17 H -0.256 1.256 18 C 0.096 3.904 19 C 0.455 3.545 20 O -0.525 6.525 21 O -0.360 6.360 22 C 0.027 3.973 23 N -0.312 5.312 24 O 0.123 5.877 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.197 0.803 31 H 0.284 0.716 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.060 0.940 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.907 1.877 -7.784 11.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.075 3.925 4 C -0.110 4.110 5 C -0.188 4.188 6 C -0.201 4.201 7 C 0.346 3.654 8 O -0.475 6.475 9 N -0.160 5.160 10 C -0.475 4.475 11 H 0.114 0.886 12 C -0.180 4.180 13 N -0.525 5.525 14 Si 0.740 3.260 15 H -0.159 1.159 16 H -0.199 1.199 17 H -0.180 1.180 18 C -0.028 4.028 19 C 0.297 3.703 20 O -0.413 6.413 21 O -0.276 6.276 22 C -0.066 4.066 23 N -0.009 5.009 24 O 0.043 5.957 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.135 0.865 30 H 0.214 0.786 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.162 0.838 35 H 0.079 0.921 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.960 1.859 -7.129 10.846 hybrid contribution 0.217 -0.002 -0.466 0.514 sum -7.742 1.857 -7.596 11.004 Atomic orbital electron populations 1.23014 0.77925 1.04181 1.01850 1.87946 1.22590 1.27326 1.95867 1.20886 0.80146 0.85974 1.05460 1.24664 0.96665 1.04727 0.84985 1.22634 0.88588 1.05122 1.02436 1.23338 0.96828 1.09694 0.90288 1.17309 0.82637 0.79631 0.85833 1.90604 1.87346 1.56089 1.13467 1.43240 1.02649 1.63419 1.06696 1.19352 1.21208 1.28451 0.78484 0.88591 1.26082 0.97701 0.98056 0.96115 1.69714 1.33756 1.39123 1.09923 0.86301 0.80234 0.79803 0.79707 1.15925 1.19905 1.17967 1.21612 0.89322 0.91523 1.00346 1.24379 0.78825 0.92924 0.74167 1.90615 1.51230 1.47959 1.51527 1.86481 1.40806 1.33214 1.67063 1.23609 1.03815 0.77545 1.01595 1.74897 0.95928 1.13862 1.16221 1.84873 1.11864 1.64464 1.34538 0.91884 0.88750 0.92209 0.88292 0.86479 0.78562 0.90551 0.86525 0.84727 0.83813 0.92135 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -9.49 10.69 -148.98 -1.59 -11.08 16 3 C 0.15 3.03 6.50 71.24 0.46 3.49 16 4 C -0.05 -1.51 7.10 25.00 0.18 -1.33 16 5 C -0.17 -6.05 10.93 22.61 0.25 -5.80 16 6 C -0.04 -2.13 6.91 42.92 0.30 -1.83 16 7 C 0.56 28.87 7.47 86.88 0.65 29.52 16 8 O -0.59 -30.63 16.59 -3.86 -0.06 -30.70 16 9 N -0.44 -23.06 1.71 -642.55 -1.10 -24.16 16 10 C -0.35 -19.82 8.59 84.13 0.72 -19.10 16 11 H 0.10 6.08 5.96 -2.91 -0.02 6.07 16 12 C 0.03 1.41 5.40 84.98 0.46 1.86 16 13 N -0.89 -51.19 13.95 21.69 0.30 -50.89 16 14 Si 0.92 40.39 24.73 68.60 1.70 42.08 16 15 H -0.23 -9.07 6.66 99.48 0.66 -8.41 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 17 H -0.26 -11.20 7.06 99.48 0.70 -10.50 16 18 C 0.10 4.32 4.48 85.63 0.38 4.70 16 19 C 0.46 20.08 7.99 71.23 0.57 20.65 16 20 O -0.53 -26.57 16.06 21.95 0.35 -26.22 16 21 O -0.36 -12.68 10.57 -51.41 -0.54 -13.22 16 22 C 0.03 0.71 10.56 113.37 1.20 1.91 16 23 N -0.31 -15.20 8.92 -49.47 -0.44 -15.64 16 24 O 0.12 4.93 11.18 71.72 0.80 5.74 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.20 6.01 8.06 -2.91 -0.02 5.98 16 31 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.12 5.05 3.21 -2.38 -0.01 5.05 16 33 H 0.14 5.47 7.51 -2.39 -0.02 5.45 16 34 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 36 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 Total: -1.00 -77.82 320.32 6.91 -70.91 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.08 Total: 17.51 kcal Atomic # 6 Polarization: 29.25 SS G_CDS: 6.41 Total: 35.66 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -1.24 Total: -90.69 kcal Atomic # 8 Polarization: -74.44 SS G_CDS: -1.05 Total: -75.48 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.70 Total: 42.08 kcal Total: -77.82 6.91 -70.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318728951.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.981 kcal (2) G-P(sol) polarization free energy of solvation -77.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds