Wall clock time and date at job start Tue Mar 31 2020 03:50:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.37360 * 125.83129 * 2 1
4 4 N 1.29402 * 108.82958 * 179.77286 * 3 2 1
5 5 N 1.40168 * 108.13900 * 0.38770 * 4 3 2
6 6 C 1.46500 * 126.35097 * 179.87482 * 5 4 3
7 7 C 1.52997 * 109.47473 * 269.68829 * 6 5 4
8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5
9 9 O 1.20826 * 119.99939 * 0.02562 * 8 7 6
10 10 O 1.34230 * 120.00046 * 179.97438 * 8 7 6
11 11 C 1.45192 * 117.00018 * 180.02562 * 10 8 7
12 12 C 1.50707 * 109.47278 * 180.02562 * 11 10 8
13 13 O 1.21297 * 119.99775 * 0.02562 * 12 11 10
14 14 N 1.34777 * 120.00197 * 179.97438 * 12 11 10
15 15 C 1.37090 * 119.99657 * 179.97438 * 14 12 11
16 16 H 1.07993 * 120.00814 * 0.02562 * 15 14 12
17 17 C 1.38959 * 119.99679 * 179.97438 * 15 14 12
18 18 N 1.31406 * 120.00042 * 0.02562 * 17 15 14
19 19 Si 1.86795 * 119.99944 * 180.02562 * 17 15 14
20 20 H 1.48509 * 109.47280 * 0.02562 * 19 17 15
21 21 H 1.48496 * 109.47422 * 120.00396 * 19 17 15
22 22 H 1.48504 * 109.47356 * 240.00311 * 19 17 15
23 23 C 1.34813 * 125.83556 * 180.02562 * 2 1 3
24 24 O 1.21821 * 126.30167 * 359.97438 * 23 2 1
25 25 H 1.09000 * 109.47004 * 269.97773 * 1 2 3
26 26 H 1.09002 * 109.47297 * 29.97515 * 1 2 3
27 27 H 1.08996 * 109.46806 * 149.97403 * 1 2 3
28 28 H 1.07997 * 125.58780 * 0.02562 * 3 2 1
29 29 H 1.09002 * 109.47129 * 149.68571 * 6 5 4
30 30 H 1.08998 * 109.46845 * 29.69378 * 6 5 4
31 31 H 1.09002 * 109.47153 * 59.99757 * 7 6 5
32 32 H 1.09001 * 109.46832 * 299.99948 * 7 6 5
33 33 H 1.09001 * 109.47630 * 300.00318 * 11 10 8
34 34 H 1.08998 * 109.47321 * 60.00129 * 11 10 8
35 35 H 0.96999 * 119.99738 * 0.02562 * 14 12 11
36 36 H 0.96995 * 120.00373 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2691 1.1136 0.0000
4 7 3.5066 0.7353 0.0049
5 7 3.5344 -0.6661 -0.0008
6 6 4.7314 -1.5109 -0.0007
7 6 5.1479 -1.8055 -1.4431
8 6 6.3795 -2.6739 -1.4429
9 8 6.8732 -3.0219 -0.3964
10 8 6.9275 -3.0617 -2.6052
11 6 8.1122 -3.8976 -2.5291
12 6 8.5828 -4.2302 -3.9216
13 8 7.9793 -3.8041 -4.8836
14 7 9.6748 -5.0002 -4.0980
15 6 10.1025 -5.3031 -5.3648
16 1 9.5648 -4.9244 -6.2214
17 6 11.2287 -6.0965 -5.5467
18 7 11.8834 -6.5569 -4.5045
19 14 11.8119 -6.5087 -7.2727
20 1 10.9090 -5.8726 -8.2655
21 1 13.1937 -5.9992 -7.4632
22 1 11.7971 -7.9816 -7.4618
23 6 2.2543 -1.0929 -0.0005
24 8 1.8806 -2.2524 -0.0006
25 1 -0.3633 -0.0004 1.0277
26 1 -0.3634 0.8902 -0.5134
27 1 -0.3633 -0.8897 -0.5142
28 1 1.9250 2.1373 0.0004
29 1 4.5151 -2.4473 0.5135
30 1 5.5414 -0.9931 0.5130
31 1 5.3642 -0.8690 -1.9573
32 1 4.3378 -2.3233 -1.9566
33 1 8.9000 -3.3639 -1.9975
34 1 7.8737 -4.8181 -1.9963
35 1 10.1576 -5.3406 -3.3286
36 1 12.6692 -7.1111 -4.6314
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001327817104.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:50:34
Heat of formation + Delta-G solvation = -70.913372 kcal
Electronic energy + Delta-G solvation = -22812.801050 eV
Core-core repulsion = 18914.003176 eV
Total energy + Delta-G solvation = -3898.797874 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 298.116 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-42.74496 -40.38810 -38.18309 -37.55132 -36.47489 -35.81456 -33.99638 -33.18369
-31.38063 -30.43953 -28.49246 -27.76115 -25.39136 -24.40295 -22.76834 -21.55730
-20.61981 -19.57983 -18.25386 -18.05387 -17.35228 -17.12925 -16.74382 -16.28237
-16.20760 -15.88320 -15.48823 -14.80465 -14.62212 -14.42194 -14.20562 -13.88950
-13.51590 -13.23672 -13.16375 -12.84120 -12.60855 -12.29619 -12.21563 -11.93172
-11.61923 -11.56136 -11.14742 -10.62576 -10.54545 -10.42525 -10.39092 -10.38381
-10.28449 -9.61148 -8.92215 -8.51695 -8.07764 -6.49420 -3.91335 1.35983
1.58648 2.25222 2.32878 2.60530 2.90974 3.12389 3.24516 3.32222
3.74322 4.04785 4.12344 4.34285 4.44796 4.55751 4.67830 4.75412
4.86866 5.04329 5.06239 5.15619 5.18183 5.34354 5.46160 5.55333
5.58746 5.70369 5.83900 6.06001 6.16007 6.60132 7.25999 7.48710
7.70957 7.79308 7.96095 8.49188 9.07863 9.40029 9.89970 10.67899
Molecular weight = 298.12amu
Principal moments of inertia in cm(-1)
A = 0.042596 B = 0.002215 C = 0.002183
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 657.180234 B =12635.730783 C =12824.295240
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.098 3.902
2 N -0.563 5.563
3 C 0.254 3.746
4 N -0.279 5.279
5 N -0.451 5.451
6 C 0.174 3.826
7 C -0.133 4.133
8 C 0.469 3.531
9 O -0.515 6.515
10 O -0.324 6.324
11 C 0.060 3.940
12 C 0.438 3.562
13 O -0.576 6.576
14 N -0.553 5.553
15 C -0.302 4.302
16 H 0.107 0.893
17 C 0.024 3.976
18 N -0.897 5.897
19 Si 0.934 3.066
20 H -0.267 1.267
21 H -0.280 1.280
22 H -0.280 1.280
23 C 0.643 3.357
24 O -0.549 6.549
25 H 0.073 0.927
26 H 0.089 0.911
27 H 0.088 0.912
28 H 0.232 0.768
29 H 0.107 0.893
30 H 0.108 0.892
31 H 0.115 0.885
32 H 0.112 0.888
33 H 0.088 0.912
34 H 0.088 0.912
35 H 0.395 0.605
36 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.451 15.681 11.884 27.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.044 4.044
2 N -0.293 5.293
3 C -0.045 4.045
4 N -0.099 5.099
5 N -0.272 5.272
6 C 0.053 3.947
7 C -0.172 4.172
8 C 0.311 3.689
9 O -0.404 6.404
10 O -0.238 6.238
11 C -0.017 4.017
12 C 0.223 3.777
13 O -0.460 6.460
14 N -0.190 5.190
15 C -0.431 4.431
16 H 0.124 0.876
17 C -0.178 4.178
18 N -0.537 5.537
19 Si 0.760 3.240
20 H -0.191 1.191
21 H -0.206 1.206
22 H -0.206 1.206
23 C 0.342 3.658
24 O -0.422 6.422
25 H 0.092 0.908
26 H 0.108 0.892
27 H 0.107 0.893
28 H 0.248 0.752
29 H 0.125 0.875
30 H 0.126 0.874
31 H 0.133 0.867
32 H 0.130 0.870
33 H 0.106 0.894
34 H 0.106 0.894
35 H 0.229 0.771
36 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -18.752 15.125 11.536 26.711
hybrid contribution -0.001 -0.649 -0.242 0.693
sum -18.753 14.477 11.293 26.245
Atomic orbital electron populations
1.21837 0.74082 1.04863 1.03572 1.45956 1.08974 1.06691 1.67650
1.25970 0.85807 0.94793 0.97959 1.77044 1.18191 0.91851 1.22853
1.48934 1.06134 1.03175 1.68988 1.21220 0.83734 0.94061 0.95646
1.21696 0.94889 1.01107 0.99503 1.23231 0.84845 0.78691 0.82142
1.90675 1.62474 1.54257 1.33020 1.86544 1.41893 1.62343 1.32982
1.22778 0.85465 0.94614 0.98849 1.19331 0.84392 0.85201 0.88802
1.90566 1.57612 1.56412 1.41418 1.41710 1.23829 1.43941 1.09545
1.19776 1.09720 1.29020 0.84555 0.87563 1.25322 0.96238 0.96593
0.99691 1.69617 1.19530 1.34744 1.29857 0.85735 0.78548 0.78180
0.81497 1.19092 1.20628 1.20620 1.16810 0.82123 0.85168 0.81674
1.91122 1.77641 1.15155 1.58284 0.90845 0.89235 0.89310 0.75223
0.87467 0.87402 0.86679 0.87008 0.89382 0.89389 0.77137 0.91675
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.34 11.05 59.85 0.66 1.00 16
2 N -0.56 -4.13 3.14 -130.10 -0.41 -4.54 16
3 C 0.25 1.36 12.66 -89.12 -1.13 0.23 16
4 N -0.28 -2.53 12.53 29.87 0.37 -2.15 16
5 N -0.45 -5.01 3.63 -65.12 -0.24 -5.25 16
6 C 0.17 1.94 5.68 -4.04 -0.02 1.91 16
7 C -0.13 -1.58 6.14 -27.88 -0.17 -1.75 16
8 C 0.47 7.26 7.96 36.01 0.29 7.54 16
9 O -0.51 -8.64 15.73 -18.75 -0.29 -8.94 16
10 O -0.32 -6.08 9.75 -45.90 -0.45 -6.53 16
11 C 0.06 1.16 5.94 36.01 0.21 1.38 16
12 C 0.44 10.71 7.86 -10.98 -0.09 10.62 16
13 O -0.58 -16.26 16.08 -14.12 -0.23 -16.49 16
14 N -0.55 -14.13 5.29 -10.96 -0.06 -14.19 16
15 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16
16 H 0.11 3.09 7.16 -52.49 -0.38 2.72 16
17 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16
18 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16
19 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16
20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16
21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
23 C 0.64 7.65 8.60 -86.74 -0.75 6.90 16
24 O -0.55 -8.50 17.71 5.08 0.09 -8.41 16
25 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16
26 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16
27 H 0.09 0.42 8.08 -51.93 -0.42 0.00 16
28 H 0.23 -0.06 8.06 -52.49 -0.42 -0.49 16
29 H 0.11 1.25 8.07 -51.93 -0.42 0.83 16
30 H 0.11 1.10 8.10 -51.93 -0.42 0.68 16
31 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16
32 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16
33 H 0.09 1.53 8.13 -51.93 -0.42 1.10 16
34 H 0.09 1.54 8.13 -51.93 -0.42 1.12 16
35 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16
36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16
LS Contribution 333.35 15.07 5.02 5.02
Total: -1.00 -37.72 333.35 -5.77 -43.49
By element:
Atomic # 1 Polarization: 9.85 SS G_CDS: -4.05 Total: 5.80 kcal
Atomic # 6 Polarization: 21.08 SS G_CDS: -1.23 Total: 19.85 kcal
Atomic # 7 Polarization: -50.03 SS G_CDS: 0.40 Total: -49.63 kcal
Atomic # 8 Polarization: -39.49 SS G_CDS: -0.88 Total: -40.37 kcal
Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal
Total LS contribution 5.02 Total: 5.02 kcal
Total: -37.72 -5.77 -43.49 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001327817104.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.423 kcal
(2) G-P(sol) polarization free energy of solvation -37.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.146 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.913 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds