Wall clock time and date at job start Tue Mar 31 2020 03:50:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.37360 * 125.83129 * 2 1
4 4 N 1.29402 * 108.82958 * 179.77286 * 3 2 1
5 5 N 1.40168 * 108.13900 * 0.38770 * 4 3 2
6 6 C 1.46500 * 126.35097 * 179.87482 * 5 4 3
7 7 C 1.52997 * 109.47473 * 269.68829 * 6 5 4
8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5
9 9 O 1.20826 * 119.99939 * 0.02562 * 8 7 6
10 10 O 1.34230 * 120.00046 * 179.97438 * 8 7 6
11 11 C 1.45192 * 117.00018 * 180.02562 * 10 8 7
12 12 C 1.50707 * 109.47278 * 180.02562 * 11 10 8
13 13 O 1.21297 * 119.99775 * 0.02562 * 12 11 10
14 14 N 1.34777 * 120.00197 * 179.97438 * 12 11 10
15 15 C 1.37090 * 119.99657 * 179.97438 * 14 12 11
16 16 H 1.07993 * 120.00814 * 0.02562 * 15 14 12
17 17 C 1.38959 * 119.99679 * 179.97438 * 15 14 12
18 18 N 1.31406 * 120.00042 * 0.02562 * 17 15 14
19 19 Si 1.86795 * 119.99944 * 180.02562 * 17 15 14
20 20 H 1.48509 * 109.47280 * 0.02562 * 19 17 15
21 21 H 1.48496 * 109.47422 * 120.00396 * 19 17 15
22 22 H 1.48504 * 109.47356 * 240.00311 * 19 17 15
23 23 C 1.34813 * 125.83556 * 180.02562 * 2 1 3
24 24 O 1.21821 * 126.30167 * 359.97438 * 23 2 1
25 25 H 1.09000 * 109.47004 * 269.97773 * 1 2 3
26 26 H 1.09002 * 109.47297 * 29.97515 * 1 2 3
27 27 H 1.08996 * 109.46806 * 149.97403 * 1 2 3
28 28 H 1.07997 * 125.58780 * 0.02562 * 3 2 1
29 29 H 1.09002 * 109.47129 * 149.68571 * 6 5 4
30 30 H 1.08998 * 109.46845 * 29.69378 * 6 5 4
31 31 H 1.09002 * 109.47153 * 59.99757 * 7 6 5
32 32 H 1.09001 * 109.46832 * 299.99948 * 7 6 5
33 33 H 1.09001 * 109.47630 * 300.00318 * 11 10 8
34 34 H 1.08998 * 109.47321 * 60.00129 * 11 10 8
35 35 H 0.96999 * 119.99738 * 0.02562 * 14 12 11
36 36 H 0.96995 * 120.00373 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2691 1.1136 0.0000
4 7 3.5066 0.7353 0.0049
5 7 3.5344 -0.6661 -0.0008
6 6 4.7314 -1.5109 -0.0007
7 6 5.1479 -1.8055 -1.4431
8 6 6.3795 -2.6739 -1.4429
9 8 6.8732 -3.0219 -0.3964
10 8 6.9275 -3.0617 -2.6052
11 6 8.1122 -3.8976 -2.5291
12 6 8.5828 -4.2302 -3.9216
13 8 7.9793 -3.8041 -4.8836
14 7 9.6748 -5.0002 -4.0980
15 6 10.1025 -5.3031 -5.3648
16 1 9.5648 -4.9244 -6.2214
17 6 11.2287 -6.0965 -5.5467
18 7 11.8834 -6.5569 -4.5045
19 14 11.8119 -6.5087 -7.2727
20 1 10.9090 -5.8726 -8.2655
21 1 13.1937 -5.9992 -7.4632
22 1 11.7971 -7.9816 -7.4618
23 6 2.2543 -1.0929 -0.0005
24 8 1.8806 -2.2524 -0.0006
25 1 -0.3633 -0.0004 1.0277
26 1 -0.3634 0.8902 -0.5134
27 1 -0.3633 -0.8897 -0.5142
28 1 1.9250 2.1373 0.0004
29 1 4.5151 -2.4473 0.5135
30 1 5.5414 -0.9931 0.5130
31 1 5.3642 -0.8690 -1.9573
32 1 4.3378 -2.3233 -1.9566
33 1 8.9000 -3.3639 -1.9975
34 1 7.8737 -4.8181 -1.9963
35 1 10.1576 -5.3406 -3.3286
36 1 12.6692 -7.1111 -4.6314
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001327817104.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:50:33
Heat of formation + Delta-G solvation = -97.034549 kcal
Electronic energy + Delta-G solvation = -22813.933749 eV
Core-core repulsion = 18914.003176 eV
Total energy + Delta-G solvation = -3899.930573 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 298.116 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-43.42230 -41.75087 -40.08829 -38.44230 -37.79191 -36.68362 -36.05601 -33.95693
-33.43512 -31.33752 -29.98439 -28.35901 -26.79742 -25.81500 -23.45365 -22.40883
-21.75277 -21.45904 -20.09971 -19.24665 -18.30003 -18.09044 -18.00396 -17.68606
-17.20736 -16.93413 -16.69707 -16.37194 -16.01773 -15.79247 -15.38762 -14.89021
-14.81152 -14.49262 -14.04850 -13.80683 -13.59930 -13.54280 -13.49545 -13.23570
-12.95526 -12.89029 -12.50885 -12.48358 -12.11799 -11.90494 -11.81501 -11.60295
-11.39969 -11.06562 -10.54097 -10.13681 -9.69380 -8.54045 -6.04757 0.62809
0.99602 1.07017 1.33551 1.36332 1.44134 1.55683 1.60336 1.84752
2.23987 2.31212 3.01706 3.11354 3.42189 3.46734 3.70131 3.90149
4.03998 4.12356 4.14392 4.20625 4.24411 4.25590 4.54333 4.58389
4.61624 4.83093 4.93581 5.05493 5.25427 5.35825 5.68730 5.87242
6.42138 6.54592 6.61631 6.91672 7.01206 7.37758 7.91390 8.63188
Molecular weight = 298.12amu
Principal moments of inertia in cm(-1)
A = 0.042596 B = 0.002215 C = 0.002183
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 657.180234 B =12635.730783 C =12824.295240
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.091 3.909
2 N -0.559 5.559
3 C 0.283 3.717
4 N -0.315 5.315
5 N -0.459 5.459
6 C 0.179 3.821
7 C -0.119 4.119
8 C 0.472 3.528
9 O -0.526 6.526
10 O -0.344 6.344
11 C 0.071 3.929
12 C 0.435 3.565
13 O -0.620 6.620
14 N -0.557 5.557
15 C -0.338 4.338
16 H 0.084 0.916
17 C -0.010 4.010
18 N -0.915 5.915
19 Si 0.999 3.001
20 H -0.272 1.272
21 H -0.268 1.268
22 H -0.269 1.269
23 C 0.625 3.375
24 O -0.599 6.599
25 H 0.086 0.914
26 H 0.133 0.867
27 H 0.070 0.930
28 H 0.291 0.709
29 H 0.094 0.906
30 H 0.116 0.884
31 H 0.131 0.869
32 H 0.111 0.889
33 H 0.111 0.889
34 H 0.107 0.893
35 H 0.400 0.600
36 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.117 17.436 12.241 29.301
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.049 4.049
2 N -0.286 5.286
3 C -0.015 4.015
4 N -0.136 5.136
5 N -0.278 5.278
6 C 0.057 3.943
7 C -0.158 4.158
8 C 0.316 3.684
9 O -0.416 6.416
10 O -0.259 6.259
11 C -0.006 4.006
12 C 0.222 3.778
13 O -0.506 6.506
14 N -0.195 5.195
15 C -0.467 4.467
16 H 0.102 0.898
17 C -0.211 4.211
18 N -0.555 5.555
19 Si 0.822 3.178
20 H -0.196 1.196
21 H -0.193 1.193
22 H -0.194 1.194
23 C 0.324 3.676
24 O -0.476 6.476
25 H 0.104 0.896
26 H 0.151 0.849
27 H 0.088 0.912
28 H 0.306 0.694
29 H 0.113 0.887
30 H 0.134 0.866
31 H 0.149 0.851
32 H 0.129 0.871
33 H 0.129 0.871
34 H 0.125 0.875
35 H 0.235 0.765
36 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -19.429 16.917 11.938 28.393
hybrid contribution 0.110 -1.098 -0.288 1.140
sum -19.319 15.819 11.650 27.554
Atomic orbital electron populations
1.22183 0.71759 1.06115 1.04858 1.46185 1.10246 1.05941 1.66230
1.27190 0.84332 0.96135 0.93820 1.77082 1.20396 0.90143 1.25987
1.48917 1.05675 1.04342 1.68907 1.21078 0.84345 0.94037 0.94839
1.21689 0.92867 1.00822 1.00375 1.23805 0.85184 0.78383 0.81023
1.90665 1.63004 1.54781 1.33163 1.86545 1.41835 1.62629 1.34925
1.22560 0.86671 0.96160 0.95244 1.20142 0.83380 0.83791 0.90519
1.90529 1.58742 1.57798 1.43577 1.41747 1.24332 1.44238 1.09153
1.19754 1.10996 1.30967 0.84985 0.89824 1.26152 0.95595 0.95624
1.03689 1.69672 1.19718 1.34525 1.31542 0.84781 0.78158 0.78287
0.76550 1.19599 1.19347 1.19440 1.17161 0.82900 0.85574 0.81972
1.91066 1.78528 1.17384 1.60607 0.89583 0.84890 0.91151 0.69413
0.88728 0.86581 0.85136 0.87122 0.87092 0.87465 0.76497 0.90924
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.40 11.05 127.77 1.41 1.82 16
2 N -0.56 -7.02 3.14 -683.68 -2.15 -9.16 16
3 C 0.28 2.05 12.66 179.82 2.28 4.32 16
4 N -0.31 -5.08 12.53 -59.42 -0.74 -5.83 16
5 N -0.46 -9.95 3.63 -478.02 -1.73 -11.69 16
6 C 0.18 3.97 5.68 86.38 0.49 4.46 16
7 C -0.12 -2.79 6.14 29.85 0.18 -2.61 16
8 C 0.47 14.48 7.96 71.24 0.57 15.04 16
9 O -0.53 -17.39 15.73 21.97 0.35 -17.04 16
10 O -0.34 -12.91 9.75 -45.06 -0.44 -13.35 16
11 C 0.07 2.70 5.94 71.24 0.42 3.12 16
12 C 0.43 21.64 7.86 87.66 0.69 22.33 16
13 O -0.62 -35.98 16.08 15.72 0.25 -35.72 16
14 N -0.56 -28.98 5.29 -306.98 -1.62 -30.61 16
15 C -0.34 -19.20 9.68 84.04 0.81 -18.39 16
16 H 0.08 5.05 7.16 -2.91 -0.02 5.03 16
17 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16
18 N -0.91 -48.91 13.05 21.67 0.28 -48.62 16
19 Si 1.00 42.43 29.55 68.60 2.03 44.46 16
20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16
21 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16
22 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16
23 C 0.62 14.77 8.60 178.99 1.54 16.31 16
24 O -0.60 -19.27 17.71 -4.74 -0.08 -19.35 16
25 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16
26 H 0.13 -0.56 8.14 -2.39 -0.02 -0.58 16
27 H 0.07 0.62 8.08 -2.39 -0.02 0.60 16
28 H 0.29 -1.86 8.06 -2.91 -0.02 -1.89 16
29 H 0.09 2.31 8.07 -2.39 -0.02 2.29 16
30 H 0.12 2.33 8.10 -2.39 -0.02 2.31 16
31 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16
32 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16
33 H 0.11 3.73 8.13 -2.39 -0.02 3.71 16
34 H 0.11 3.68 8.13 -2.39 -0.02 3.66 16
35 H 0.40 19.56 7.90 -92.71 -0.73 18.82 16
36 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16
Total: -1.00 -84.64 333.35 5.40 -79.24
By element:
Atomic # 1 Polarization: 20.92 SS G_CDS: 0.40 Total: 21.32 kcal
Atomic # 6 Polarization: 37.50 SS G_CDS: 8.86 Total: 46.36 kcal
Atomic # 7 Polarization: -99.94 SS G_CDS: -5.96 Total: -105.90 kcal
Atomic # 8 Polarization: -85.55 SS G_CDS: 0.07 Total: -85.47 kcal
Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal
Total: -84.64 5.40 -79.24 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001327817104.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.791 kcal
(2) G-P(sol) polarization free energy of solvation -84.642 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.432 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.244 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.035 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds