Wall clock time and date at job start Tue Mar 31 2020 04:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34780 * 120.00091 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99882 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00000 * 179.97438 * 11 10 9 14 14 O 1.45204 * 109.46692 * 179.97438 * 13 11 10 15 15 C 1.34229 * 116.99722 * 180.02562 * 14 13 11 16 16 O 1.20825 * 120.00048 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00091 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.47330 * 180.02562 * 17 15 14 19 19 H 1.08998 * 109.29554 * 54.99911 * 18 17 15 20 20 C 1.52918 * 109.29980 * 174.58130 * 18 17 15 21 21 C 1.53354 * 108.67342 * 171.06422 * 20 18 17 22 22 C 1.53061 * 108.42414 * 292.46990 * 21 20 18 23 23 C 1.50185 * 109.89359 * 48.89946 * 22 21 20 24 24 O 1.21273 * 118.24347 * 162.43759 * 23 22 21 25 25 N 1.33091 * 123.42337 * 342.22788 * 23 22 21 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 0.97003 * 120.00560 * 359.97438 * 10 9 7 30 30 H 1.08998 * 109.47278 * 299.99730 * 13 11 10 31 31 H 1.09002 * 109.47072 * 60.00726 * 13 11 10 32 32 H 1.09011 * 109.46997 * 300.00066 * 17 15 14 33 33 H 1.08998 * 109.47051 * 60.00044 * 17 15 14 34 34 H 1.08999 * 109.60578 * 290.81749 * 20 18 17 35 35 H 1.09003 * 109.60751 * 51.14470 * 20 18 17 36 36 H 1.08994 * 109.66854 * 52.20236 * 21 20 18 37 37 H 1.09001 * 109.66940 * 172.70031 * 21 20 18 38 38 H 1.08998 * 109.40206 * 169.03078 * 22 21 20 39 39 H 1.08998 * 109.40311 * 288.77348 * 22 21 20 40 40 H 0.96995 * 117.74481 * 182.38375 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 1.7536 -4.8834 -0.0154 12 8 0.5611 -5.1050 -0.0156 13 6 2.7328 -6.0288 -0.0210 14 8 2.0067 -7.2863 -0.0253 15 6 2.7378 -8.4120 -0.0301 16 8 3.9443 -8.3488 -0.0301 17 6 2.0536 -9.7547 -0.0353 18 6 3.1073 -10.8641 -0.0394 19 1 3.7830 -10.7221 0.8039 20 6 2.4135 -12.2205 0.0915 21 6 3.4506 -13.3266 -0.1382 22 6 3.8946 -13.2769 -1.6022 23 6 4.2501 -11.8677 -1.9808 24 8 4.9177 -11.6924 -2.9779 25 7 3.8672 -10.8020 -1.2816 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 3.1566 -3.4355 -0.0097 30 1 3.3589 -5.9673 -0.9111 31 1 3.3600 -5.9750 0.8689 32 1 1.4309 -9.8488 0.8545 33 1 1.4306 -9.8416 -0.9255 34 1 1.9889 -12.3192 1.0906 35 1 1.6206 -12.2992 -0.6522 36 1 4.3103 -13.1642 0.5117 37 1 3.0053 -14.2977 0.0780 38 1 4.7648 -13.9190 -1.7387 39 1 3.0830 -13.6290 -2.2389 40 1 4.1137 -9.9272 -1.6205 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342934747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:13 Heat of formation + Delta-G solvation = -175.845690 kcal Electronic energy + Delta-G solvation = -23287.906438 eV Core-core repulsion = 19488.098701 eV Total energy + Delta-G solvation = -3799.807738 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19764 -40.26640 -38.81259 -37.31790 -36.39480 -34.30259 -33.67567 -32.45740 -31.91977 -29.53163 -28.19733 -26.62647 -24.19773 -23.00510 -22.57293 -21.02448 -20.00452 -19.59308 -18.04310 -17.66520 -17.44395 -17.02127 -16.50414 -16.20267 -15.70572 -15.50682 -15.15808 -14.86116 -14.57553 -14.39303 -14.14529 -13.99827 -13.60444 -13.25019 -13.05158 -12.54806 -12.49676 -12.07465 -12.03646 -11.85412 -11.79496 -11.54078 -11.50198 -11.02381 -10.97932 -10.82022 -10.79162 -10.37775 -10.04296 -9.46037 -9.42414 -9.24744 -8.82429 -8.04153 -6.23065 -4.30501 1.90199 2.21876 2.40888 2.95018 3.10729 3.20260 3.27633 3.30577 3.81291 3.94237 4.14024 4.18021 4.30009 4.32880 4.50984 4.67339 4.68304 4.91608 4.95004 5.07612 5.10083 5.12855 5.15680 5.24820 5.27390 5.36165 5.37785 5.39781 5.66243 6.16143 6.51541 7.07065 7.17492 7.24704 7.41227 7.45180 7.58069 7.88076 7.95024 8.44512 8.66674 8.90878 9.36048 10.87077 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.040580 B = 0.002188 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.830169 B =12793.057558 C =13165.661133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.535 6.535 13 C 0.048 3.952 14 O -0.326 6.326 15 C 0.459 3.541 16 O -0.510 6.510 17 C -0.129 4.129 18 C 0.153 3.847 19 H 0.088 0.912 20 C -0.134 4.134 21 C -0.123 4.123 22 C -0.137 4.137 23 C 0.518 3.482 24 O -0.560 6.560 25 N -0.711 5.711 26 H 0.266 0.734 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.393 0.607 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.597 -26.286 2.408 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.412 6.412 13 C -0.029 4.029 14 O -0.241 6.241 15 C 0.302 3.698 16 O -0.399 6.399 17 C -0.168 4.168 18 C 0.047 3.953 19 H 0.106 0.894 20 C -0.171 4.171 21 C -0.161 4.161 22 C -0.177 4.177 23 C 0.305 3.695 24 O -0.439 6.439 25 N -0.365 5.365 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.226 0.774 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.186 -26.362 1.979 26.940 hybrid contribution 1.036 1.588 -0.025 1.896 sum 6.222 -24.774 1.954 25.618 Atomic orbital electron populations 1.69984 1.06119 1.27334 1.48715 1.24962 0.94952 0.99542 0.94587 0.86328 0.79813 0.82778 0.77799 1.19599 1.20743 1.20751 1.21243 0.93373 0.90268 1.53467 0.91699 1.19189 0.88162 0.81546 0.98049 1.46377 1.11564 1.05357 1.72293 1.19881 0.89106 0.84006 0.78830 1.90713 1.16301 1.84551 1.49646 1.22907 0.94409 0.80910 1.04699 1.86566 1.40426 1.14098 1.82987 1.23719 0.86612 0.87070 0.72383 1.90693 1.15441 1.87973 1.45819 1.21891 0.99586 0.87571 1.07703 1.20832 0.92282 0.94187 0.87986 0.89396 1.21965 0.98559 0.92469 1.04140 1.21651 0.99349 0.99456 0.95618 1.21673 1.04252 0.93732 0.98013 1.20134 0.78935 0.87609 0.82836 1.90779 1.39411 1.86703 1.26978 1.45649 1.55748 1.10099 1.24978 0.92402 0.95223 0.95230 0.77387 0.88395 0.88385 0.85542 0.86528 0.89104 0.90220 0.90849 0.90072 0.88161 0.88149 0.75842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 13.29 55.43 0.74 -24.87 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.55 -14.46 9.28 -34.44 -0.32 -14.78 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.46 5.43 -5.20 -0.03 6.43 16 10 N -0.71 -14.26 5.55 -61.48 -0.34 -14.60 16 11 C 0.50 9.66 7.91 -10.98 -0.09 9.57 16 12 O -0.53 -12.69 16.50 -14.11 -0.23 -12.92 16 13 C 0.05 0.69 5.94 36.01 0.21 0.90 16 14 O -0.33 -4.59 9.76 -45.90 -0.45 -5.04 16 15 C 0.46 5.06 7.60 36.01 0.27 5.34 16 16 O -0.51 -6.51 14.28 -18.75 -0.27 -6.78 16 17 C -0.13 -0.84 5.46 -27.88 -0.15 -0.99 16 18 C 0.15 0.94 2.65 -68.38 -0.18 0.76 16 19 H 0.09 0.57 7.95 -51.93 -0.41 0.16 16 20 C -0.13 -0.46 5.30 -26.59 -0.14 -0.60 16 21 C -0.12 -0.45 6.03 -26.52 -0.16 -0.61 16 22 C -0.14 -0.82 6.03 -28.10 -0.17 -0.99 16 23 C 0.52 5.36 7.71 -11.98 -0.09 5.27 16 24 O -0.56 -8.51 17.78 5.56 0.10 -8.41 16 25 N -0.71 -6.56 4.99 -54.92 -0.27 -6.84 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.39 6.67 8.32 -40.82 -0.34 6.33 16 30 H 0.10 1.22 8.13 -51.93 -0.42 0.80 16 31 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 32 H 0.13 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.08 0.25 8.11 -51.93 -0.42 -0.17 16 36 H 0.07 0.29 8.13 -51.93 -0.42 -0.13 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.40 4.51 6.90 -40.82 -0.28 4.23 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -36.21 344.52 -7.13 -43.34 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.64 Total: 3.48 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -0.94 Total: 11.93 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.12 Total: -46.31 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.85 Total: -33.15 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.21 -7.13 -43.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342934747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.502 kcal (2) G-P(sol) polarization free energy of solvation -36.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds