Wall clock time and date at job start Tue Mar 31 2020 04:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34780 * 120.00091 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99882 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00000 * 179.97438 * 11 10 9 14 14 O 1.45204 * 109.46692 * 179.97438 * 13 11 10 15 15 C 1.34229 * 116.99722 * 180.02562 * 14 13 11 16 16 O 1.20825 * 120.00048 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00091 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.47330 * 180.02562 * 17 15 14 19 19 H 1.08998 * 109.29554 * 54.99911 * 18 17 15 20 20 C 1.52918 * 109.29980 * 174.58130 * 18 17 15 21 21 C 1.53354 * 108.67342 * 171.06422 * 20 18 17 22 22 C 1.53061 * 108.42414 * 292.46990 * 21 20 18 23 23 C 1.50185 * 109.89359 * 48.89946 * 22 21 20 24 24 O 1.21273 * 118.24347 * 162.43759 * 23 22 21 25 25 N 1.33091 * 123.42337 * 342.22788 * 23 22 21 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 0.97003 * 120.00560 * 359.97438 * 10 9 7 30 30 H 1.08998 * 109.47278 * 299.99730 * 13 11 10 31 31 H 1.09002 * 109.47072 * 60.00726 * 13 11 10 32 32 H 1.09011 * 109.46997 * 300.00066 * 17 15 14 33 33 H 1.08998 * 109.47051 * 60.00044 * 17 15 14 34 34 H 1.08999 * 109.60578 * 290.81749 * 20 18 17 35 35 H 1.09003 * 109.60751 * 51.14470 * 20 18 17 36 36 H 1.08994 * 109.66854 * 52.20236 * 21 20 18 37 37 H 1.09001 * 109.66940 * 172.70031 * 21 20 18 38 38 H 1.08998 * 109.40206 * 169.03078 * 22 21 20 39 39 H 1.08998 * 109.40311 * 288.77348 * 22 21 20 40 40 H 0.96995 * 117.74481 * 182.38375 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 1.7536 -4.8834 -0.0154 12 8 0.5611 -5.1050 -0.0156 13 6 2.7328 -6.0288 -0.0210 14 8 2.0067 -7.2863 -0.0253 15 6 2.7378 -8.4120 -0.0301 16 8 3.9443 -8.3488 -0.0301 17 6 2.0536 -9.7547 -0.0353 18 6 3.1073 -10.8641 -0.0394 19 1 3.7830 -10.7221 0.8039 20 6 2.4135 -12.2205 0.0915 21 6 3.4506 -13.3266 -0.1382 22 6 3.8946 -13.2769 -1.6022 23 6 4.2501 -11.8677 -1.9808 24 8 4.9177 -11.6924 -2.9779 25 7 3.8672 -10.8020 -1.2816 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 3.1566 -3.4355 -0.0097 30 1 3.3589 -5.9673 -0.9111 31 1 3.3600 -5.9750 0.8689 32 1 1.4309 -9.8488 0.8545 33 1 1.4306 -9.8416 -0.9255 34 1 1.9889 -12.3192 1.0906 35 1 1.6206 -12.2992 -0.6522 36 1 4.3103 -13.1642 0.5117 37 1 3.0053 -14.2977 0.0780 38 1 4.7648 -13.9190 -1.7387 39 1 3.0830 -13.6290 -2.2389 40 1 4.1137 -9.9272 -1.6205 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342934747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:12 Heat of formation + Delta-G solvation = -203.391417 kcal Electronic energy + Delta-G solvation = -23289.100911 eV Core-core repulsion = 19488.098701 eV Total energy + Delta-G solvation = -3801.002210 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.03652 -41.14967 -40.35388 -38.16816 -37.32775 -36.19889 -34.43405 -34.15080 -32.62874 -30.88107 -29.13992 -28.12397 -24.99228 -24.38134 -23.49324 -21.89810 -21.65886 -20.08552 -19.26673 -18.89836 -18.20196 -17.96802 -17.90104 -17.19374 -17.02306 -16.86420 -16.36752 -16.22040 -15.88958 -15.24354 -14.89448 -14.66259 -14.49110 -14.43955 -14.15917 -14.05921 -13.72775 -13.59781 -13.07173 -12.92961 -12.76946 -12.62130 -12.31496 -12.24123 -11.93100 -11.89980 -11.79741 -11.67050 -11.48449 -10.93942 -10.84539 -10.79905 -10.16382 -9.94885 -8.31390 -6.47723 1.04632 1.24218 1.43730 1.43916 1.53565 1.57580 1.62298 2.29520 2.32919 2.55967 3.03996 3.40215 3.57828 3.64670 3.71562 3.92577 3.96747 4.03440 4.06264 4.20760 4.23669 4.51993 4.62332 4.69695 4.91233 4.98606 5.05509 5.11071 5.14316 5.20287 5.24991 5.39348 5.40454 5.61046 5.72436 5.80708 6.38113 6.53304 6.61647 6.76495 7.17552 7.18803 7.33748 8.80863 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.040580 B = 0.002188 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.830169 B =12793.057558 C =13165.661133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.700 5.700 11 C 0.498 3.502 12 O -0.583 6.583 13 C 0.061 3.939 14 O -0.347 6.347 15 C 0.458 3.542 16 O -0.530 6.530 17 C -0.122 4.122 18 C 0.150 3.850 19 H 0.087 0.913 20 C -0.129 4.129 21 C -0.118 4.118 22 C -0.132 4.132 23 C 0.510 3.490 24 O -0.621 6.621 25 N -0.712 5.712 26 H 0.269 0.731 27 H -0.006 1.006 28 H -0.008 1.008 29 H 0.412 0.588 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.159 0.841 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 -27.589 3.505 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.284 3.716 12 O -0.464 6.464 13 C -0.016 4.016 14 O -0.263 6.263 15 C 0.303 3.697 16 O -0.419 6.419 17 C -0.160 4.160 18 C 0.045 3.955 19 H 0.105 0.895 20 C -0.166 4.166 21 C -0.155 4.155 22 C -0.172 4.172 23 C 0.299 3.701 24 O -0.504 6.504 25 N -0.362 5.362 26 H 0.078 0.922 27 H 0.012 0.988 28 H 0.010 0.990 29 H 0.248 0.752 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.176 0.824 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.233 -27.705 3.117 28.568 hybrid contribution 0.696 1.933 -0.352 2.084 sum 6.929 -25.772 2.765 26.830 Atomic orbital electron populations 1.70134 1.08192 1.28569 1.49867 1.26050 0.95801 1.03862 0.93874 0.85107 0.79057 0.77363 0.77664 1.17729 1.20545 1.20428 1.21640 0.94400 0.90431 1.52950 0.89676 1.18629 0.88571 0.83799 0.94625 1.46064 1.11709 1.04845 1.72507 1.20732 0.89354 0.84726 0.76757 1.90685 1.18876 1.85307 1.51493 1.22704 0.92493 0.79468 1.06962 1.86574 1.41471 1.14595 1.83617 1.24607 0.86559 0.87335 0.71241 1.90689 1.16402 1.88083 1.46759 1.22089 0.99688 0.84547 1.09656 1.21098 0.92145 0.95887 0.86334 0.89482 1.22026 0.98326 0.90143 1.06105 1.21671 0.99489 1.00907 0.93451 1.21722 1.04849 0.90427 1.00155 1.20984 0.77840 0.89387 0.81907 1.90741 1.42304 1.87702 1.29695 1.45851 1.55362 1.09275 1.25675 0.92184 0.98824 0.99000 0.75178 0.86241 0.85747 0.82360 0.85500 0.86302 0.89369 0.91132 0.87470 0.88085 0.86660 0.77452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.98 41.76 29.54 68.60 2.03 43.79 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.56 -29.60 9.28 25.60 0.24 -29.36 16 8 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.23 5.43 85.64 0.46 14.70 16 10 N -0.70 -28.46 5.55 -466.80 -2.59 -31.05 16 11 C 0.50 19.41 7.91 87.66 0.69 20.10 16 12 O -0.58 -28.53 16.50 15.75 0.26 -28.27 16 13 C 0.06 1.64 5.94 71.24 0.42 2.07 16 14 O -0.35 -9.35 9.76 -45.06 -0.44 -9.79 16 15 C 0.46 9.35 7.60 71.24 0.54 9.89 16 16 O -0.53 -12.82 14.28 21.97 0.31 -12.51 16 17 C -0.12 -1.27 5.46 29.85 0.16 -1.11 16 18 C 0.15 1.49 2.65 45.11 0.12 1.61 16 19 H 0.09 0.92 7.95 -2.39 -0.02 0.90 16 20 C -0.13 -0.40 5.30 30.69 0.16 -0.24 16 21 C -0.12 -0.48 6.03 30.73 0.19 -0.30 16 22 C -0.13 -1.36 6.03 29.71 0.18 -1.18 16 23 C 0.51 10.46 7.71 87.76 0.68 11.13 16 24 O -0.62 -19.65 17.78 -3.01 -0.05 -19.70 16 25 N -0.71 -12.63 4.99 -446.99 -2.23 -14.86 16 26 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 27 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H 0.41 13.52 8.32 -92.71 -0.77 12.75 16 30 H 0.12 2.76 8.13 -2.39 -0.02 2.74 16 31 H 0.12 2.75 8.13 -2.39 -0.02 2.73 16 32 H 0.16 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.09 0.19 8.11 -2.39 -0.02 0.17 16 36 H 0.07 0.36 8.13 -2.39 -0.02 0.34 16 37 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.39 8.79 6.90 -92.71 -0.64 8.15 16 Total: -1.00 -83.51 344.52 1.55 -81.96 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.33 Total: 17.30 kcal Atomic # 6 Polarization: 23.68 SS G_CDS: 4.31 Total: 27.99 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -4.53 Total: -100.77 kcal Atomic # 8 Polarization: -70.35 SS G_CDS: 0.08 Total: -70.27 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -83.51 1.55 -81.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342934747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.429 kcal (2) G-P(sol) polarization free energy of solvation -83.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds