Wall clock time and date at job start Tue Mar 31 2020 04:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53004 * 109.46669 * 2 1 4 4 H 1.09000 * 109.47043 * 55.74684 * 3 2 1 5 5 C 1.50704 * 109.46620 * 175.74229 * 3 2 1 6 6 O 1.21287 * 120.00044 * 90.09955 * 5 3 2 7 7 N 1.34777 * 120.00017 * 270.36900 * 5 3 2 8 8 C 1.37094 * 120.00065 * 185.21790 * 7 5 3 9 9 H 1.08005 * 120.00097 * 19.28982 * 8 7 5 10 10 C 1.38948 * 119.99998 * 199.29100 * 8 7 5 11 11 N 1.31411 * 120.00365 * 6.97896 * 10 8 7 12 12 Si 1.86807 * 120.00106 * 186.97345 * 10 8 7 13 13 H 1.48499 * 109.46805 * 60.00332 * 12 10 8 14 14 H 1.48504 * 109.47130 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46926 * 300.00267 * 12 10 8 16 16 C 1.46503 * 119.99990 * 5.21780 * 7 5 3 17 17 C 1.50706 * 109.46851 * 88.15729 * 16 7 5 18 18 O 1.20828 * 120.00212 * 0.02562 * 17 16 7 19 19 O 1.34228 * 119.99511 * 179.97438 * 17 16 7 20 20 N 1.46498 * 109.47430 * 295.74283 * 3 2 1 21 21 C 1.46756 * 124.35164 * 120.00534 * 20 3 2 22 22 C 1.54486 * 105.47167 * 197.01921 * 21 20 3 23 23 C 1.54621 * 101.76431 * 334.57842 * 22 21 20 24 24 C 1.34422 * 124.34574 * 299.70434 * 20 3 2 25 25 O 1.21280 * 124.94289 * 359.56478 * 24 20 3 26 26 H 1.08996 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46608 * 300.00082 * 1 2 3 28 28 H 1.08998 * 109.46808 * 59.99637 * 1 2 3 29 29 H 1.08993 * 109.46784 * 240.00288 * 2 1 3 30 30 H 1.08997 * 109.46889 * 119.99819 * 2 1 3 31 31 H 0.97001 * 120.00498 * 179.97438 * 11 10 8 32 32 H 1.08995 * 109.47067 * 208.15862 * 16 7 5 33 33 H 1.08997 * 109.46986 * 328.16376 * 16 7 5 34 34 H 0.96701 * 116.99453 * 180.02562 * 19 17 16 35 35 H 1.09005 * 110.24580 * 316.01144 * 21 20 3 36 36 H 1.08989 * 110.24929 * 78.01389 * 21 20 3 37 37 H 1.08997 * 110.97123 * 92.70159 * 22 21 20 38 38 H 1.09004 * 110.96229 * 216.46153 * 22 21 20 39 39 H 1.09001 * 110.48780 * 143.48040 * 23 22 21 40 40 H 1.09003 * 110.49342 * 265.98983 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6157 1.9779 0.8494 5 6 3.5433 1.4439 0.1055 6 8 4.2218 1.4202 -0.8996 7 7 4.1339 1.4658 1.3168 8 6 5.4971 1.5750 1.4130 9 1 6.0691 1.9499 0.5771 10 6 6.1428 1.2033 2.5858 11 7 5.4680 0.6204 3.5511 12 14 7.9703 1.5321 2.7904 13 1 8.2252 2.9914 2.6876 14 1 8.4152 1.0439 4.1205 15 1 8.7232 0.8218 1.7257 16 6 3.3190 1.3730 2.5308 17 6 3.1173 -0.0765 2.8908 18 8 3.6047 -0.9430 2.2040 19 8 2.3972 -0.4047 3.9749 20 7 1.6372 2.1030 -1.2441 21 6 0.7915 3.3006 -1.3097 22 6 0.2854 3.3684 -2.7677 23 6 1.3936 2.5980 -3.5222 24 6 1.9995 1.6932 -2.4720 25 8 2.7070 0.7359 -2.7042 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.9189 0.3606 4.3697 32 1 3.8268 1.8834 3.3491 33 1 2.3508 1.8418 2.3552 34 1 2.2957 -1.3473 4.1655 35 1 -0.0495 3.2066 -0.6226 36 1 1.3764 4.1889 -1.0717 37 1 -0.6771 2.8673 -2.8702 38 1 0.2246 4.4009 -3.1118 39 1 0.9648 2.0108 -4.3343 40 1 2.1440 3.2885 -3.9071 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594724895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:30 Heat of formation + Delta-G solvation = -134.873409 kcal Electronic energy + Delta-G solvation = -26438.505162 eV Core-core repulsion = 22640.474116 eV Total energy + Delta-G solvation = -3798.031046 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.36754 -39.24297 -37.90846 -35.85725 -35.20576 -34.57807 -34.15830 -31.63741 -30.75162 -27.79707 -27.33921 -26.92795 -24.43733 -21.87551 -21.70232 -21.11454 -20.04340 -18.10168 -17.10351 -17.05565 -16.67659 -16.21186 -15.81685 -15.50038 -14.93196 -14.69580 -14.44080 -14.02356 -13.82447 -13.44619 -13.31988 -12.97948 -12.88251 -12.72957 -12.39334 -12.20385 -11.94873 -11.68141 -11.45350 -11.39911 -11.17560 -10.95842 -10.94133 -10.82374 -10.69975 -10.43923 -10.29976 -10.15386 -9.56287 -9.11316 -9.03458 -8.79644 -7.92830 -7.86725 -6.39592 -3.92366 3.11602 3.21561 3.24347 3.28305 3.31855 3.51035 3.70787 4.14889 4.29477 4.55514 4.58372 4.77673 4.85950 5.06337 5.17848 5.27538 5.37182 5.47251 5.52931 5.57977 5.66094 5.70292 5.81686 5.90641 5.94260 6.01303 6.06047 6.24034 6.35988 6.52393 6.67265 6.72585 6.95869 7.51581 7.57849 7.65282 7.99898 8.39840 8.79916 9.10700 9.12818 9.31692 9.86600 10.67503 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.006143 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.460447 B = 4556.795311 C = 5473.023668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.148 3.852 4 H 0.093 0.907 5 C 0.451 3.549 6 O -0.539 6.539 7 N -0.438 5.438 8 C -0.290 4.290 9 H 0.103 0.897 10 C 0.028 3.972 11 N -0.900 5.900 12 Si 0.938 3.062 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.148 3.852 17 C 0.495 3.505 18 O -0.506 6.506 19 O -0.536 6.536 20 N -0.609 5.609 21 C 0.104 3.896 22 C -0.129 4.129 23 C -0.155 4.155 24 C 0.517 3.483 25 O -0.495 6.495 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.272 0.728 32 H 0.135 0.865 33 H 0.068 0.932 34 H 0.390 0.610 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.072 6.068 -2.216 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.041 3.959 4 H 0.111 0.889 5 C 0.237 3.763 6 O -0.418 6.418 7 N -0.160 5.160 8 C -0.417 4.417 9 H 0.121 0.879 10 C -0.172 4.172 11 N -0.542 5.542 12 Si 0.765 3.235 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.199 1.199 16 C 0.021 3.979 17 C 0.335 3.665 18 O -0.392 6.392 19 O -0.347 6.347 20 N -0.345 5.345 21 C -0.020 4.020 22 C -0.167 4.167 23 C -0.196 4.196 24 C 0.303 3.697 25 O -0.367 6.367 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.152 0.848 33 H 0.086 0.914 34 H 0.246 0.754 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.034 5.616 -2.925 14.490 hybrid contribution 0.896 -0.610 0.683 1.281 sum -12.138 5.007 -2.242 13.320 Atomic orbital electron populations 1.21712 0.95610 1.01371 1.01239 1.21884 0.95591 0.95032 1.04997 1.20929 0.94486 0.94604 0.85857 0.88900 1.20308 0.88897 0.82773 0.84307 1.90630 1.64640 1.51588 1.34916 1.43427 1.06570 1.63895 1.02145 1.19676 0.81099 1.39877 1.01065 0.87918 1.25236 1.00558 0.95538 0.95915 1.69469 1.36777 1.40529 1.07430 0.85798 0.81690 0.78598 0.77412 1.19933 1.20950 1.19900 1.20733 0.94854 0.89938 0.92331 1.23689 0.72771 0.93503 0.76491 1.90618 1.45237 1.51076 1.52225 1.84520 1.69351 1.32774 1.48013 1.47994 1.51744 1.28982 1.05794 1.22031 0.94167 0.88199 0.97584 1.22544 0.98405 1.01464 0.94254 1.22324 0.99241 0.99649 0.98383 1.20605 0.80123 0.85125 0.83849 1.90753 1.35013 1.28106 1.82808 0.92802 0.92989 0.92940 0.89971 0.90021 0.91758 0.84781 0.91435 0.75392 0.90680 0.91437 0.90276 0.89573 0.88701 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.79 37.16 0.36 -1.61 16 2 C -0.14 -2.58 5.34 -26.72 -0.14 -2.73 16 3 C 0.15 2.83 2.03 -69.08 -0.14 2.69 16 4 H 0.09 1.51 5.91 -51.93 -0.31 1.20 16 5 C 0.45 11.32 6.74 -10.98 -0.07 11.25 16 6 O -0.54 -15.82 13.60 -17.02 -0.23 -16.05 16 7 N -0.44 -11.19 2.12 -116.09 -0.25 -11.43 16 8 C -0.29 -8.10 9.35 -14.94 -0.14 -8.24 16 9 H 0.10 3.02 7.39 -52.48 -0.39 2.63 16 10 C 0.03 0.74 5.21 -17.47 -0.09 0.64 16 11 N -0.90 -23.57 8.36 55.50 0.46 -23.10 16 12 Si 0.94 21.25 29.56 -169.99 -5.02 16.22 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 16 C 0.15 3.21 5.09 -5.19 -0.03 3.18 16 17 C 0.49 10.99 4.83 36.01 0.17 11.16 16 18 O -0.51 -13.29 15.41 -18.75 -0.29 -13.58 16 19 O -0.54 -9.63 13.42 -39.25 -0.53 -10.15 16 20 N -0.61 -10.29 2.22 -166.16 -0.37 -10.66 16 21 C 0.10 1.17 7.30 -3.12 -0.02 1.14 16 22 C -0.13 -1.15 7.18 -25.10 -0.18 -1.33 16 23 C -0.16 -1.95 6.86 -26.74 -0.18 -2.13 16 24 C 0.52 9.73 6.87 -10.86 -0.07 9.66 16 25 O -0.49 -12.04 14.40 -17.02 -0.24 -12.29 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.69 7.73 -51.93 -0.40 0.29 16 29 H 0.08 1.83 6.69 -51.93 -0.35 1.48 16 30 H 0.08 1.68 4.85 -51.93 -0.25 1.43 16 31 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.13 3.03 6.38 -51.93 -0.33 2.70 16 33 H 0.07 1.18 5.80 -51.93 -0.30 0.88 16 34 H 0.39 5.47 9.10 45.56 0.41 5.88 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.74 8.14 -51.94 -0.42 0.32 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -37.62 324.31 -6.55 -44.17 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.43 Total: 8.30 kcal Atomic # 6 Polarization: 24.23 SS G_CDS: -0.54 Total: 23.69 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.15 Total: -45.19 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -1.29 Total: -52.08 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -37.62 -6.55 -44.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594724895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.701 kcal (2) G-P(sol) polarization free energy of solvation -37.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds