Wall clock time and date at job start Tue Mar 31 2020 04:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46759 * 124.35277 * 2 1 4 4 C 1.54478 * 105.47569 * 162.98156 * 3 2 1 5 5 C 1.54627 * 101.76537 * 25.41207 * 4 3 2 6 6 C 1.53003 * 110.48382 * 94.01229 * 5 4 3 7 7 C 1.50701 * 110.48832 * 216.52562 * 5 4 3 8 8 O 1.21287 * 119.99806 * 4.48954 * 7 5 4 9 9 N 1.34773 * 119.99741 * 184.49136 * 7 5 4 10 10 C 1.37092 * 120.00321 * 4.60280 * 9 7 5 11 11 H 1.07996 * 120.00095 * 321.02356 * 10 9 7 12 12 C 1.38952 * 120.00475 * 141.03045 * 10 9 7 13 13 N 1.31421 * 119.99737 * 340.90954 * 12 10 9 14 14 Si 1.86796 * 120.00538 * 160.90908 * 12 10 9 15 15 H 1.48507 * 109.46918 * 59.99815 * 14 12 10 16 16 H 1.48500 * 109.47331 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47037 * 300.00066 * 14 12 10 18 18 C 1.46510 * 119.99790 * 184.59634 * 9 7 5 19 19 C 1.53001 * 109.46560 * 84.00618 * 18 9 7 20 20 C 1.50698 * 109.46752 * 180.02562 * 19 18 9 21 21 O 1.20824 * 120.00143 * 0.02562 * 20 19 18 22 22 O 1.34227 * 119.99966 * 180.02562 * 20 19 18 23 23 C 1.34420 * 124.34600 * 179.97438 * 2 1 3 24 24 O 1.21282 * 124.94314 * 0.44997 * 23 2 1 25 25 H 1.09004 * 109.46811 * 90.00110 * 1 2 3 26 26 H 1.08999 * 109.47052 * 210.00432 * 1 2 3 27 27 H 1.09002 * 109.47070 * 330.00478 * 1 2 3 28 28 H 1.08996 * 110.24539 * 43.97945 * 3 2 1 29 29 H 1.09000 * 110.31552 * 282.02010 * 3 2 1 30 30 H 1.08999 * 110.96861 * 267.29401 * 4 3 2 31 31 H 1.09001 * 111.00128 * 143.54658 * 4 3 2 32 32 H 1.08999 * 109.46736 * 194.90586 * 6 5 4 33 33 H 1.08997 * 109.47605 * 314.90861 * 6 5 4 34 34 H 1.09000 * 109.46717 * 74.91257 * 6 5 4 35 35 H 0.96995 * 120.00062 * 180.02562 * 13 12 10 36 36 H 1.08995 * 109.46884 * 204.00745 * 18 9 7 37 37 H 1.09004 * 109.46812 * 324.01208 * 18 9 7 38 38 H 1.08997 * 109.47403 * 300.00167 * 19 18 9 39 39 H 1.08996 * 109.47115 * 60.00425 * 19 18 9 40 40 H 0.96706 * 117.00437 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7010 0.7486 0.4357 5 6 3.6898 -0.7379 0.0103 6 6 4.2959 -0.9001 -1.3852 7 6 4.4402 -1.5787 1.0109 8 8 4.8756 -1.0721 2.0232 9 7 4.6274 -2.8933 0.7807 10 6 4.2189 -3.4466 -0.4052 11 1 3.2898 -3.1313 -0.8566 12 6 5.0000 -4.4134 -1.0266 13 7 6.2698 -4.5350 -0.7103 14 14 4.2454 -5.5401 -2.3112 15 1 3.7200 -4.7258 -3.4365 16 1 5.2811 -6.4754 -2.8190 17 1 3.1355 -6.3143 -1.6999 18 6 5.2678 -3.7311 1.7978 19 6 4.2208 -4.1862 2.8165 20 6 4.8795 -5.0475 3.8631 21 8 6.0647 -5.2737 3.8009 22 8 4.1495 -5.5633 4.8644 23 6 2.2234 -1.1098 0.0005 24 8 1.7945 -2.2443 -0.0068 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.8985 1.9382 0.7101 29 1 2.3309 1.6442 -0.9998 30 1 3.8269 0.8447 1.5142 31 1 4.4759 1.3007 -0.0962 32 1 4.0459 -1.8858 -1.7775 33 1 3.8942 -0.1330 -2.0472 34 1 5.3793 -0.7971 -1.3249 35 1 6.8152 -5.2095 -1.1443 36 1 5.7143 -4.6037 1.3212 37 1 6.0433 -3.1575 2.3054 38 1 3.7742 -3.3136 3.2930 39 1 3.4453 -4.7598 2.3089 40 1 4.6161 -6.1092 5.5120 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598577921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:42 Heat of formation + Delta-G solvation = -140.810474 kcal Electronic energy + Delta-G solvation = -26056.353766 eV Core-core repulsion = 22258.065269 eV Total energy + Delta-G solvation = -3798.288497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63044 -39.74948 -38.07607 -36.10811 -35.74356 -34.84280 -33.39330 -31.86690 -30.52691 -28.75965 -26.63640 -25.34288 -24.74948 -23.91058 -21.52787 -20.33767 -19.74252 -18.69522 -17.73410 -16.98985 -16.18802 -16.08980 -15.82204 -15.71198 -15.46375 -14.68901 -14.43968 -13.98547 -13.80349 -13.50629 -13.12749 -12.91512 -12.60247 -12.50093 -12.41728 -12.23075 -11.81376 -11.70825 -11.63958 -11.49100 -11.31259 -11.11739 -10.98554 -10.92349 -10.62718 -10.35273 -10.25496 -10.09352 -10.00902 -9.16588 -8.77519 -8.49717 -8.40368 -7.45589 -6.31677 -3.97782 2.70689 3.00948 3.17691 3.26266 3.27220 3.31855 3.47824 3.82314 4.19860 4.66732 4.78300 4.87909 5.05805 5.27387 5.32734 5.44848 5.54881 5.60084 5.65444 5.79556 5.83886 5.85245 6.00949 6.15490 6.20349 6.38099 6.43170 6.50819 6.60430 6.79702 6.84982 6.91296 7.13707 7.34485 7.37745 7.63357 7.93418 8.34323 8.46986 8.69903 9.10857 9.46045 9.89346 10.71478 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.007077 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.749385 B = 3955.419180 C = 5060.169687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.632 5.632 3 C 0.107 3.893 4 C -0.118 4.118 5 C -0.091 4.091 6 C -0.130 4.130 7 C 0.489 3.511 8 O -0.601 6.601 9 N -0.419 5.419 10 C -0.338 4.338 11 H 0.119 0.881 12 C 0.039 3.961 13 N -0.859 5.859 14 Si 0.910 3.090 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.131 3.869 19 C -0.125 4.125 20 C 0.484 3.516 21 O -0.514 6.514 22 O -0.524 6.524 23 C 0.532 3.468 24 O -0.499 6.499 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.270 0.730 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 7.056 1.060 10.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.369 5.369 3 C -0.016 4.016 4 C -0.156 4.156 5 C -0.098 4.098 6 C -0.187 4.187 7 C 0.276 3.724 8 O -0.487 6.487 9 N -0.135 5.135 10 C -0.466 4.466 11 H 0.136 0.864 12 C -0.167 4.167 13 N -0.495 5.495 14 Si 0.737 3.263 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.197 1.197 18 C 0.007 3.993 19 C -0.164 4.164 20 C 0.326 3.674 21 O -0.402 6.402 22 O -0.336 6.336 23 C 0.318 3.682 24 O -0.372 6.372 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.131 0.869 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -7.784 6.699 1.169 10.336 hybrid contribution -0.090 -0.943 -0.242 0.978 sum -7.873 5.756 0.926 9.797 Atomic orbital electron populations 1.21447 0.78752 1.02661 1.01348 1.48193 1.05978 1.07580 1.75139 1.22069 0.91249 0.87202 1.01104 1.22657 0.95318 0.93669 1.04000 1.21230 0.93363 0.95787 0.99384 1.21868 1.00937 1.04410 0.91481 1.19631 0.83414 0.82654 0.86714 1.90517 1.55425 1.72384 1.30359 1.43229 1.51425 1.04452 1.14373 1.20132 1.06225 1.22100 0.98132 0.86406 1.25452 0.94261 0.98980 0.97998 1.69950 1.04558 1.32797 1.42179 0.86267 0.78840 0.80418 0.80810 1.19711 1.21110 1.19747 1.21134 0.92260 0.98047 0.87871 1.21868 1.01874 0.98573 0.94107 1.23789 0.85532 0.77499 0.80574 1.90699 1.17133 1.57677 1.74686 1.84600 1.46688 1.64147 1.38162 1.20634 0.88313 0.84292 0.74919 1.90709 1.77863 1.20331 1.48299 0.93056 0.90922 0.91566 0.90870 0.91547 0.88526 0.89382 0.87846 0.93937 0.91532 0.92017 0.86865 0.91716 0.88631 0.87634 0.74201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.19 10.96 59.85 0.66 1.84 16 2 N -0.63 -9.63 3.33 -180.29 -0.60 -10.23 16 3 C 0.11 1.32 7.35 -3.13 -0.02 1.30 16 4 C -0.12 -1.83 6.01 -25.10 -0.15 -1.99 16 5 C -0.09 -1.79 0.56 -155.67 -0.09 -1.88 16 6 C -0.13 -2.44 7.78 37.16 0.29 -2.15 16 7 C 0.49 11.70 6.42 -10.99 -0.07 11.63 16 8 O -0.60 -15.34 15.12 5.55 0.08 -15.26 16 9 N -0.42 -10.49 2.52 -114.81 -0.29 -10.78 16 10 C -0.34 -8.51 5.80 -14.93 -0.09 -8.60 16 11 H 0.12 2.99 3.64 -52.49 -0.19 2.80 16 12 C 0.04 0.99 4.94 -17.46 -0.09 0.90 16 13 N -0.86 -22.80 11.51 55.50 0.64 -22.16 16 14 Si 0.91 20.06 29.59 -169.99 -5.03 15.03 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 C 0.13 3.22 4.19 -4.04 -0.02 3.20 16 19 C -0.13 -2.63 6.09 -27.88 -0.17 -2.80 16 20 C 0.48 9.31 8.33 36.00 0.30 9.61 16 21 O -0.51 -11.31 16.74 -18.75 -0.31 -11.62 16 22 O -0.52 -7.94 13.42 -39.25 -0.53 -8.46 16 23 C 0.53 10.46 6.51 -10.86 -0.07 10.39 16 24 O -0.50 -11.41 14.39 5.56 0.08 -11.33 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.64 6.94 -51.93 -0.36 1.28 16 31 H 0.09 1.19 7.90 -51.93 -0.41 0.78 16 32 H 0.10 2.21 4.95 -51.93 -0.26 1.95 16 33 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.11 3.01 5.59 -51.93 -0.29 2.72 16 37 H 0.06 1.69 7.50 -51.93 -0.39 1.30 16 38 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 39 H 0.11 2.18 8.14 -51.93 -0.42 1.75 16 40 H 0.40 4.04 9.10 45.56 0.41 4.46 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -32.82 329.80 -4.91 -37.74 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -4.41 Total: 10.65 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: 0.48 Total: 21.46 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.25 Total: -43.18 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -0.68 Total: -46.67 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.82 -4.91 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598577921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.074 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds