Wall clock time and date at job start Tue Mar 31 2020 03:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37366 * 125.83507 * 2 1 4 4 N 1.29394 * 108.83234 * 179.77039 * 3 2 1 5 5 N 1.40176 * 108.13954 * 0.38549 * 4 3 2 6 6 C 1.46500 * 126.34875 * 179.87418 * 5 4 3 7 7 C 1.52995 * 109.47210 * 269.69259 * 6 5 4 8 8 C 1.50703 * 109.46786 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00331 * 359.71800 * 8 7 6 10 10 N 1.34780 * 119.99764 * 180.02562 * 8 7 6 11 11 C 1.37102 * 119.99899 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99781 * 16.51295 * 11 10 8 13 13 C 1.38947 * 119.99596 * 196.51091 * 11 10 8 14 14 N 1.31414 * 120.00327 * 21.63869 * 13 11 10 15 15 Si 1.86809 * 119.99856 * 201.63917 * 13 11 10 16 16 H 1.48500 * 109.46880 * 59.99755 * 15 13 11 17 17 H 1.48495 * 109.47057 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46938 * 300.00261 * 15 13 11 19 19 C 1.46503 * 119.99931 * 359.97438 * 10 8 7 20 20 C 1.50698 * 109.46823 * 84.07482 * 19 10 8 21 21 O 1.20827 * 120.00230 * 359.97438 * 20 19 10 22 22 O 1.34227 * 120.00104 * 179.97438 * 20 19 10 23 23 C 1.34821 * 125.83310 * 180.02562 * 2 1 3 24 24 O 1.21809 * 126.30239 * 359.97438 * 23 2 1 25 25 H 1.08993 * 109.47130 * 269.97781 * 1 2 3 26 26 H 1.08998 * 109.46870 * 29.97800 * 1 2 3 27 27 H 1.09002 * 109.47047 * 149.97326 * 1 2 3 28 28 H 1.08000 * 125.58161 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.46682 * 149.68748 * 6 5 4 30 30 H 1.09001 * 109.46666 * 29.69472 * 6 5 4 31 31 H 1.08998 * 109.47716 * 60.00122 * 7 6 5 32 32 H 1.09002 * 109.46856 * 299.99291 * 7 6 5 33 33 H 0.96998 * 119.99881 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.47189 * 204.06693 * 19 10 8 35 35 H 1.08993 * 109.47490 * 324.07306 * 19 10 8 36 36 H 0.96706 * 117.00015 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7353 0.0049 5 7 3.5344 -0.6662 -0.0007 6 6 4.7314 -1.5109 -0.0005 7 6 5.1480 -1.8055 -1.4428 8 6 6.3789 -2.6749 -1.4425 9 8 6.8772 -3.0203 -0.3921 10 7 6.9297 -3.0636 -2.6096 11 6 8.0498 -3.8541 -2.6094 12 1 8.3375 -4.3826 -1.7126 13 6 8.8148 -3.9753 -3.7630 14 7 8.7468 -3.0529 -4.6965 15 14 9.9399 -5.4496 -3.9870 16 1 9.1337 -6.6964 -3.9583 17 1 10.6408 -5.3437 -5.2918 18 1 10.9392 -5.4811 -2.8888 19 6 6.3314 -2.6412 -3.8785 20 6 6.8374 -1.2686 -4.2401 21 8 7.6173 -0.7011 -3.5124 22 8 6.4217 -0.6763 -5.3707 23 6 2.2543 -1.0930 -0.0005 24 8 1.8806 -2.2524 -0.0006 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5143 28 1 1.9250 2.1373 0.0004 29 1 4.5151 -2.4473 0.5138 30 1 5.5414 -0.9930 0.5132 31 1 5.3643 -0.8691 -1.9571 32 1 4.3379 -2.3234 -1.9564 33 1 9.2805 -3.1377 -5.5020 34 1 6.6054 -3.3475 -4.6623 35 1 5.2465 -2.6136 -3.7773 36 1 6.7736 0.2043 -5.5600 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600994999.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:30 Heat of formation + Delta-G solvation = -87.548853 kcal Electronic energy + Delta-G solvation = -24623.751712 eV Core-core repulsion = 20724.232469 eV Total energy + Delta-G solvation = -3899.519243 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.38928 -41.30817 -40.06521 -38.39698 -37.22315 -36.64042 -36.31803 -34.02737 -33.49465 -30.96610 -29.53812 -28.38212 -27.08909 -25.30517 -23.31235 -22.86513 -22.14289 -20.72063 -19.10345 -18.88158 -18.64974 -17.85504 -17.77313 -17.51961 -16.97063 -16.78258 -16.39442 -16.26126 -15.97513 -15.87220 -15.34253 -14.76935 -14.34820 -14.26058 -13.84361 -13.66370 -13.50778 -13.45888 -13.39779 -13.19978 -12.84332 -12.67990 -12.50272 -12.35194 -12.15751 -12.12514 -11.56164 -11.35702 -11.05075 -10.98703 -10.55536 -9.92592 -9.65405 -8.46969 -5.98876 0.73864 1.12934 1.36301 1.42801 1.53485 1.57061 1.65006 1.80278 2.19533 2.29167 2.49410 2.89312 3.07415 3.46428 3.73070 3.85873 3.95354 4.12951 4.15728 4.32315 4.35987 4.56989 4.64451 4.66967 4.72023 4.84295 4.87168 4.97200 5.12069 5.43458 5.72867 5.91442 5.95055 6.33000 6.65882 6.95695 7.04532 7.23951 7.40691 7.83835 8.59985 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.004148 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.420126 B = 6748.429841 C = 7342.796583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.557 5.557 3 C 0.281 3.719 4 N -0.323 5.323 5 N -0.458 5.458 6 C 0.191 3.809 7 C -0.129 4.129 8 C 0.455 3.545 9 O -0.616 6.616 10 N -0.440 5.440 11 C -0.346 4.346 12 H 0.082 0.918 13 C 0.002 3.998 14 N -0.891 5.891 15 Si 0.994 3.006 16 H -0.263 1.263 17 H -0.272 1.272 18 H -0.280 1.280 19 C 0.141 3.859 20 C 0.498 3.502 21 O -0.546 6.546 22 O -0.518 6.518 23 C 0.625 3.375 24 O -0.598 6.598 25 H 0.085 0.915 26 H 0.134 0.866 27 H 0.071 0.929 28 H 0.294 0.706 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.276 0.724 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.596 11.179 0.368 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.285 5.285 3 C -0.017 4.017 4 N -0.144 5.144 5 N -0.277 5.277 6 C 0.069 3.931 7 C -0.170 4.170 8 C 0.244 3.756 9 O -0.503 6.503 10 N -0.159 5.159 11 C -0.473 4.473 12 H 0.100 0.900 13 C -0.200 4.200 14 N -0.530 5.530 15 Si 0.818 3.182 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.206 1.206 19 C 0.015 3.985 20 C 0.340 3.660 21 O -0.434 6.434 22 O -0.330 6.330 23 C 0.324 3.676 24 O -0.476 6.476 25 H 0.104 0.896 26 H 0.152 0.848 27 H 0.090 0.910 28 H 0.309 0.691 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -16.463 10.257 0.965 19.421 hybrid contribution 0.642 -0.339 -0.337 0.800 sum -15.821 9.918 0.628 18.683 Atomic orbital electron populations 1.22192 0.71544 1.06190 1.04857 1.46187 1.10243 1.05674 1.66355 1.27206 0.84191 0.96191 0.94080 1.77069 1.20872 0.90600 1.25846 1.49018 1.05897 1.04199 1.68633 1.20849 0.83343 0.93007 0.95902 1.21742 0.96188 1.00004 0.99106 1.20472 0.87865 0.83457 0.83779 1.90494 1.67047 1.60791 1.31942 1.43566 1.25192 1.43539 1.03555 1.19647 1.04713 1.23264 0.99648 0.89977 1.25992 0.98579 0.99976 0.95467 1.69874 1.41667 1.31393 1.10059 0.84987 0.77635 0.78170 0.77452 1.18745 1.19634 1.20612 1.20832 0.97179 0.91278 0.89202 1.23712 0.77293 0.87597 0.77436 1.90612 1.33724 1.65755 1.53359 1.84444 1.68862 1.37627 1.42062 1.17134 0.82669 0.85701 0.82073 1.91037 1.78469 1.17267 1.60780 0.89608 0.84767 0.90992 0.69139 0.89324 0.88929 0.89509 0.88480 0.91387 0.85979 0.86824 0.72584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 11.05 127.77 1.41 2.21 16 2 N -0.56 -10.41 3.14 -683.69 -2.15 -12.55 16 3 C 0.28 3.99 12.66 179.82 2.28 6.27 16 4 N -0.32 -8.33 12.53 -59.41 -0.74 -9.07 16 5 N -0.46 -14.89 3.63 -478.03 -1.73 -16.63 16 6 C 0.19 7.22 5.68 86.38 0.49 7.71 16 7 C -0.13 -5.17 4.63 29.85 0.14 -5.03 16 8 C 0.45 23.18 7.41 87.66 0.65 23.83 16 9 O -0.62 -35.58 15.62 -3.05 -0.05 -35.62 16 10 N -0.44 -22.97 2.18 -639.60 -1.39 -24.36 16 11 C -0.35 -19.70 9.34 84.04 0.78 -18.92 16 12 H 0.08 5.00 7.37 -2.91 -0.02 4.98 16 13 C 0.00 0.09 4.87 84.93 0.41 0.50 16 14 N -0.89 -46.56 9.28 21.66 0.20 -46.36 16 15 Si 0.99 42.29 29.61 68.60 2.03 44.32 16 16 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 19 C 0.14 6.16 4.97 85.63 0.43 6.59 16 20 C 0.50 21.84 5.86 71.24 0.42 22.26 16 21 O -0.55 -28.62 16.79 21.96 0.37 -28.25 16 22 O -0.52 -17.59 13.42 -51.38 -0.69 -18.28 16 23 C 0.63 19.65 8.60 178.99 1.54 21.19 16 24 O -0.60 -23.43 17.71 -4.70 -0.08 -23.52 16 25 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 28 H 0.29 -0.16 8.06 -2.91 -0.02 -0.19 16 29 H 0.09 3.55 8.07 -2.39 -0.02 3.53 16 30 H 0.09 3.62 8.10 -2.39 -0.02 3.60 16 31 H 0.09 3.45 7.52 -2.39 -0.02 3.43 16 32 H 0.10 3.56 7.42 -2.39 -0.02 3.54 16 33 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 34 H 0.12 5.51 6.37 -2.39 -0.02 5.50 16 35 H 0.11 4.03 6.69 -2.39 -0.02 4.02 16 36 H 0.41 10.45 9.10 -74.05 -0.67 9.77 16 Total: -1.00 -87.89 321.66 4.78 -83.11 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.47 Total: 20.58 kcal Atomic # 6 Polarization: 58.08 SS G_CDS: 8.55 Total: 66.62 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -5.82 Total: -108.97 kcal Atomic # 8 Polarization: -105.22 SS G_CDS: -0.45 Total: -105.67 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -87.89 4.78 -83.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600994999.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.435 kcal (2) G-P(sol) polarization free energy of solvation -87.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds