Wall clock time and date at job start Tue Mar 31 2020 04:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86806 * 120.00222 * 2 1 4 4 H 1.48496 * 109.46963 * 84.35632 * 3 2 1 5 5 H 1.48495 * 109.46866 * 324.35535 * 3 2 1 6 6 H 1.48499 * 109.46823 * 204.35758 * 3 2 1 7 7 C 1.38949 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00211 * 19.93163 * 7 2 1 9 9 N 1.37102 * 120.00419 * 199.93444 * 7 2 1 10 10 C 1.46505 * 119.99754 * 40.59472 * 9 7 2 11 11 C 1.53001 * 109.47081 * 90.00227 * 10 9 7 12 12 C 1.50697 * 109.46797 * 179.97438 * 11 10 9 13 13 O 1.20820 * 120.00368 * 0.02562 * 12 11 10 14 14 O 1.34234 * 119.99576 * 180.02562 * 12 11 10 15 15 C 1.34773 * 120.00288 * 220.59820 * 9 7 2 16 16 O 1.21297 * 120.00104 * 175.80664 * 15 9 7 17 17 C 1.50697 * 119.99949 * 355.80289 * 15 9 7 18 18 H 1.09003 * 110.01882 * 316.29513 * 17 15 9 19 19 C 1.53870 * 110.03409 * 77.68073 * 17 15 9 20 20 C 1.54270 * 106.60088 * 119.28326 * 19 17 15 21 21 C 1.54891 * 104.19261 * 23.61321 * 20 19 17 22 22 H 1.09001 * 110.75529 * 80.37175 * 21 20 19 23 23 C 1.50698 * 110.75858 * 203.74001 * 21 20 19 24 24 N 1.34770 * 119.99973 * 298.55129 * 23 21 20 25 25 O 1.21283 * 119.99561 * 118.54221 * 23 21 20 26 26 C 1.54266 * 110.03643 * 194.85014 * 17 15 9 27 27 H 0.96998 * 120.00480 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46697 * 210.00156 * 10 9 7 29 29 H 1.09004 * 109.47347 * 330.00334 * 10 9 7 30 30 H 1.08995 * 109.46962 * 299.99709 * 11 10 9 31 31 H 1.09004 * 109.46942 * 59.99860 * 11 10 9 32 32 H 0.96703 * 116.99989 * 180.02562 * 14 12 11 33 33 H 1.09005 * 110.03687 * 238.57312 * 19 17 15 34 34 H 1.09000 * 110.03047 * 0.02562 * 19 17 15 35 35 H 1.09001 * 110.48848 * 142.28737 * 20 19 17 36 36 H 1.09000 * 110.48824 * 264.93568 * 20 19 17 37 37 H 0.96999 * 120.00166 * 359.97438 * 24 23 21 38 38 H 0.97004 * 119.99754 * 180.02562 * 24 23 21 39 39 H 1.09007 * 110.48182 * 335.78651 * 26 17 15 40 40 H 1.09002 * 110.48781 * 98.42107 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3764 2.1152 1.3933 5 1 1.5103 2.6153 -0.8159 6 1 3.6002 1.4086 -0.5774 7 6 2.0088 -1.2033 0.0005 8 1 1.5174 -2.1108 -0.3179 9 7 3.3182 -1.2388 0.4054 10 6 3.7491 -0.4491 1.5617 11 6 3.6000 -1.2851 2.8344 12 6 4.0438 -0.4729 4.0237 13 8 4.4383 0.6586 3.8693 14 8 4.0007 -1.0067 5.2546 15 6 4.2091 -2.0001 -0.2604 16 8 5.3814 -1.9731 0.0497 17 6 3.7486 -2.8849 -1.3901 18 1 2.8299 -3.4002 -1.1098 19 6 3.5153 -2.0436 -2.6571 20 6 4.4793 -2.5879 -3.7314 21 6 4.7694 -4.0410 -3.2801 22 1 3.9562 -4.7056 -3.5718 23 6 6.0823 -4.5227 -3.8417 24 7 6.2564 -4.6008 -5.1758 25 8 6.9822 -4.8398 -3.0930 26 6 4.8463 -3.9113 -1.7386 27 1 -0.4851 -0.8400 -0.0004 28 1 4.7928 -0.1610 1.4363 29 1 3.1321 0.4461 1.6406 30 1 2.5563 -1.5731 2.9597 31 1 4.2170 -2.1802 2.7554 32 1 4.2952 -0.4472 5.9863 33 1 2.4836 -2.1512 -2.9921 34 1 3.7355 -0.9953 -2.4550 35 1 4.0019 -2.5810 -4.7112 36 1 5.3992 -2.0034 -3.7500 37 1 5.5366 -4.3473 -5.7746 38 1 7.1014 -4.9112 -5.5373 39 1 5.8254 -3.5404 -1.4353 40 1 4.6367 -4.8699 -1.2641 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:38 Heat of formation + Delta-G solvation = -205.501223 kcal Electronic energy + Delta-G solvation = -25009.663613 eV Core-core repulsion = 21208.569915 eV Total energy + Delta-G solvation = -3801.093698 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59747 -41.18761 -40.34916 -37.89399 -37.22054 -36.83547 -34.61392 -34.22397 -32.64273 -30.29920 -29.69059 -26.56054 -26.22115 -23.58961 -22.52925 -21.91537 -20.75017 -20.63141 -19.40289 -18.93483 -18.42773 -17.95426 -17.80662 -17.49743 -17.12046 -16.77146 -16.46714 -16.00822 -15.67782 -15.30900 -15.06176 -14.68251 -14.39729 -14.30201 -14.19543 -13.92725 -13.51280 -13.04492 -13.00250 -12.63113 -12.53994 -12.19909 -12.06732 -12.03694 -11.84193 -11.79891 -11.70358 -11.60447 -11.40901 -11.04570 -10.87790 -10.60666 -10.42515 -9.88829 -8.83212 -6.17776 1.09745 1.33967 1.41281 1.60037 1.67019 1.78745 2.02157 2.26674 2.57846 2.81504 2.98336 3.52076 3.64801 3.78376 3.84210 3.96185 4.29351 4.32662 4.38267 4.48180 4.52505 4.54349 4.60665 4.64671 4.66943 4.80473 4.86580 5.00689 5.12218 5.36928 5.39237 5.44903 5.50681 5.72687 5.85943 5.95901 6.32674 6.52035 6.92159 7.02188 7.32619 7.41480 7.81538 8.54002 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.015779 B = 0.004939 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.061331 B = 5668.220017 C = 6827.132996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.008 3.992 3 Si 1.059 2.941 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.402 4.402 8 H 0.087 0.913 9 N -0.472 5.472 10 C 0.110 3.890 11 C -0.117 4.117 12 C 0.495 3.505 13 O -0.550 6.550 14 O -0.505 6.505 15 C 0.479 3.521 16 O -0.619 6.619 17 C -0.088 4.088 18 H 0.096 0.904 19 C -0.095 4.095 20 C -0.102 4.102 21 C -0.106 4.106 22 H 0.140 0.860 23 C 0.523 3.477 24 N -0.833 5.833 25 O -0.596 6.596 26 C -0.094 4.094 27 H 0.274 0.726 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.429 0.571 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.116 0.884 36 H 0.053 0.947 37 H 0.419 0.581 38 H 0.406 0.594 39 H 0.058 0.942 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.403 -6.935 -6.487 10.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.199 4.199 3 Si 0.887 3.113 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.530 4.530 8 H 0.105 0.895 9 N -0.192 5.192 10 C -0.014 4.014 11 C -0.155 4.155 12 C 0.339 3.661 13 O -0.441 6.441 14 O -0.319 6.319 15 C 0.270 3.730 16 O -0.505 6.505 17 C -0.109 4.109 18 H 0.114 0.886 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.127 4.127 22 H 0.157 0.843 23 C 0.309 3.691 24 N -0.397 5.397 25 O -0.477 6.477 26 C -0.133 4.133 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.129 0.871 32 H 0.291 0.709 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.135 0.865 36 H 0.072 0.928 37 H 0.251 0.749 38 H 0.237 0.763 39 H 0.077 0.923 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.150 -5.368 -6.083 9.112 hybrid contribution 0.236 -1.026 0.553 1.190 sum 4.386 -6.394 -5.530 9.524 Atomic orbital electron populations 1.70860 1.06991 1.30896 1.44194 1.26693 0.96182 1.03157 0.93850 0.83739 0.75100 0.74905 0.77594 1.20428 1.20581 1.20584 1.20289 0.86169 0.96543 1.49992 0.89528 1.43831 1.09103 1.42240 1.24063 1.21334 1.00115 0.94121 0.85817 1.21564 1.05394 0.99549 0.89024 1.23294 0.72948 0.85127 0.84755 1.90697 1.45324 1.21320 1.86742 1.84500 1.79639 1.50385 1.17337 1.21256 0.84637 0.83118 0.83942 1.90538 1.18934 1.70757 1.70277 1.21636 0.99583 0.95566 0.94135 0.88552 1.21861 1.00926 0.98042 0.92485 1.22369 0.99139 0.92499 0.99950 1.22290 0.95557 0.99402 0.95423 0.84253 1.20765 0.89333 0.75789 0.83208 1.43659 1.20820 1.69055 1.06121 1.90735 1.45541 1.51289 1.60098 1.22130 0.98587 0.97853 0.94696 0.91582 0.91724 0.91830 0.86292 0.87123 0.70910 0.89302 0.93990 0.86536 0.92765 0.74888 0.76256 0.92318 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.17 13.69 21.66 0.30 -46.87 16 2 C 0.01 0.38 5.33 84.93 0.45 0.84 16 3 Si 1.06 48.96 25.38 68.60 1.74 50.70 16 4 H -0.28 -12.75 6.72 99.48 0.67 -12.08 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.40 -19.09 8.45 84.04 0.71 -18.38 16 8 H 0.09 4.15 6.90 -2.91 -0.02 4.13 16 9 N -0.47 -21.73 2.12 -635.52 -1.35 -23.08 16 10 C 0.11 4.91 3.52 86.38 0.30 5.22 16 11 C -0.12 -4.32 6.14 29.85 0.18 -4.14 16 12 C 0.50 16.93 8.33 71.24 0.59 17.53 16 13 O -0.55 -22.20 16.74 21.98 0.37 -21.83 16 14 O -0.50 -12.69 13.42 -51.45 -0.69 -13.38 16 15 C 0.48 21.71 6.63 87.66 0.58 22.29 16 16 O -0.62 -31.51 14.99 -3.08 -0.05 -31.55 16 17 C -0.09 -3.18 2.52 -10.82 -0.03 -3.21 16 18 H 0.10 3.34 6.99 -2.39 -0.02 3.33 16 19 C -0.09 -2.98 5.89 31.32 0.18 -2.80 16 20 C -0.10 -2.35 6.22 31.67 0.20 -2.15 16 21 C -0.11 -2.50 3.29 -10.25 -0.03 -2.53 16 22 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 23 C 0.52 13.31 7.42 87.66 0.65 13.96 16 24 N -0.83 -11.96 8.82 -173.54 -1.53 -13.49 16 25 O -0.60 -21.90 16.63 -3.04 -0.05 -21.95 16 26 C -0.09 -3.16 5.29 31.67 0.17 -3.00 16 27 H 0.27 14.07 8.73 -92.71 -0.81 13.26 16 28 H 0.06 3.07 7.33 -2.39 -0.02 3.05 16 29 H 0.06 2.98 3.46 -2.38 -0.01 2.98 16 30 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 31 H 0.11 3.95 8.14 -2.38 -0.02 3.93 16 32 H 0.43 6.39 9.10 -74.05 -0.67 5.72 16 33 H 0.09 2.51 8.14 -2.38 -0.02 2.50 16 34 H 0.04 1.57 7.67 -2.39 -0.02 1.55 16 35 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.42 8.04 -2.39 -0.02 1.40 16 37 H 0.42 2.93 8.82 -92.71 -0.82 2.12 16 38 H 0.41 5.06 8.93 -92.71 -0.83 4.23 16 39 H 0.06 2.48 6.15 -2.38 -0.01 2.46 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -74.56 332.71 1.42 -73.13 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -1.28 Total: 24.68 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: 3.96 Total: 23.64 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -2.58 Total: -83.44 kcal Atomic # 8 Polarization: -88.30 SS G_CDS: -0.42 Total: -88.72 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.74 Total: 50.70 kcal Total: -74.56 1.42 -73.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.369 kcal (2) G-P(sol) polarization free energy of solvation -74.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds