Wall clock time and date at job start Tue Mar 31 2020 04:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47250 * 2 1 4 4 C 1.37100 * 119.99825 * 263.86122 * 3 2 1 5 5 H 1.07997 * 119.99735 * 193.21641 * 4 3 2 6 6 C 1.38943 * 120.00204 * 13.20797 * 4 3 2 7 7 N 1.31412 * 119.99965 * 15.57486 * 6 4 3 8 8 Si 1.86798 * 120.00170 * 195.57270 * 6 4 3 9 9 H 1.48498 * 109.47277 * 60.00440 * 8 6 4 10 10 H 1.48506 * 109.47282 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47419 * 300.00361 * 8 6 4 12 12 C 1.34778 * 120.00188 * 83.85268 * 3 2 1 13 13 O 1.21292 * 119.99591 * 5.46448 * 12 3 2 14 14 C 1.50695 * 120.00126 * 185.18788 * 12 3 2 15 15 H 1.08996 * 109.40025 * 40.45250 * 14 12 3 16 16 C 1.53067 * 109.40154 * 160.28082 * 14 12 3 17 17 C 1.53348 * 108.42326 * 169.02819 * 16 14 12 18 18 C 1.52915 * 108.67668 * 292.46785 * 17 16 14 19 19 N 1.45754 * 110.48465 * 50.75307 * 18 17 16 20 20 C 1.46502 * 117.94288 * 160.92378 * 19 18 17 21 21 C 1.50704 * 109.47141 * 90.00400 * 20 19 18 22 22 O 1.20823 * 119.99851 * 359.97438 * 21 20 19 23 23 O 1.34223 * 120.00005 * 180.02562 * 21 20 19 24 24 C 1.33347 * 124.11103 * 340.92941 * 19 18 17 25 25 O 1.21284 * 118.24865 * 182.22327 * 24 19 18 26 26 H 1.09006 * 109.47151 * 173.23065 * 1 2 3 27 27 H 1.08998 * 109.47239 * 293.22331 * 1 2 3 28 28 H 1.08999 * 109.47214 * 53.22898 * 1 2 3 29 29 H 1.08999 * 109.47486 * 239.99401 * 2 1 3 30 30 H 1.09004 * 109.47105 * 119.99657 * 2 1 3 31 31 H 0.97002 * 120.00675 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.67355 * 288.76378 * 16 14 12 33 33 H 1.09001 * 109.67443 * 49.26049 * 16 14 12 34 34 H 1.08995 * 109.60124 * 52.23049 * 17 16 14 35 35 H 1.09005 * 109.59798 * 172.54827 * 17 16 14 36 36 H 1.09004 * 109.30308 * 171.06522 * 18 17 16 37 37 H 1.08997 * 109.30172 * 290.44359 * 18 17 16 38 38 H 1.09005 * 109.47246 * 210.00214 * 20 19 18 39 39 H 1.08996 * 109.47458 * 330.00130 * 20 19 18 40 40 H 0.96700 * 116.99853 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3666 1.9852 -1.1805 5 1 2.9211 2.9118 -1.1700 6 6 2.0062 1.4050 -2.3905 7 7 1.0878 0.4655 -2.4210 8 14 2.8270 1.9604 -3.9739 9 1 4.2898 1.7216 -3.8833 10 1 2.2695 1.1925 -5.1163 11 1 2.5738 3.4089 -4.1811 12 6 2.1252 2.0583 1.1605 13 8 1.9123 1.4946 2.2132 14 6 2.5151 3.5139 1.1505 15 1 2.0109 4.0181 0.3261 16 6 2.0983 4.1610 2.4735 17 6 2.7410 5.5508 2.5569 18 6 4.2553 5.3829 2.6874 19 7 4.7604 4.4887 1.6532 20 6 6.1918 4.5351 1.3446 21 6 6.9267 3.5533 2.2206 22 8 6.3173 2.8839 3.0208 23 8 8.2582 3.4233 2.1125 24 6 4.0014 3.6310 0.9703 25 8 4.5402 2.9066 0.1603 26 1 -0.3634 -1.0206 -0.1211 27 1 -0.3633 0.4052 0.9444 28 1 -0.3633 0.6152 -0.8232 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.8358 0.0606 -3.2657 32 1 1.0130 4.2558 2.5098 33 1 2.4410 3.5470 3.3064 34 1 2.5121 6.1144 1.6525 35 1 2.3531 6.0814 3.4265 36 1 4.7357 6.3564 2.5881 37 1 4.4886 4.9679 3.6679 38 1 6.3465 4.2744 0.2976 39 1 6.5707 5.5404 1.5284 40 1 8.6853 2.7806 2.6952 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603724049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:56 Heat of formation + Delta-G solvation = -162.855323 kcal Electronic energy + Delta-G solvation = -26078.718193 eV Core-core repulsion = 22279.473760 eV Total energy + Delta-G solvation = -3799.244433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.19195 -41.04208 -39.87498 -37.65309 -37.16210 -36.85141 -35.02675 -33.41267 -32.01123 -30.53852 -29.42366 -26.76914 -26.07601 -23.97617 -23.64153 -22.40506 -21.13541 -19.69696 -19.26118 -18.91546 -18.17048 -17.94414 -17.62105 -17.21116 -16.70740 -16.31320 -16.19754 -15.65778 -15.35271 -15.07936 -14.90922 -14.43035 -14.35415 -14.12689 -13.92615 -13.59102 -13.28541 -13.20062 -12.84796 -12.79317 -12.68921 -12.55579 -12.37076 -12.24920 -12.06014 -12.01424 -11.87480 -11.73578 -11.65149 -10.84018 -10.65374 -10.36685 -9.86605 -9.69429 -8.20671 -5.78064 1.15955 1.27368 1.42437 1.48281 1.56639 1.78481 2.03418 2.30708 2.40952 2.98409 3.17737 3.65332 3.79719 3.86054 3.97292 4.20251 4.24593 4.35105 4.37046 4.44768 4.58470 4.61029 4.71197 4.83520 4.88727 4.92591 5.06580 5.08588 5.13326 5.35301 5.41007 5.42923 5.51145 5.58621 5.79524 5.87656 6.29241 6.55304 6.93140 7.10694 7.18383 7.59894 8.00780 8.76456 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.006150 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.928857 B = 4552.032923 C = 5251.600445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.132 3.868 3 N -0.434 5.434 4 C -0.324 4.324 5 H 0.107 0.893 6 C -0.012 4.012 7 N -0.885 5.885 8 Si 0.986 3.014 9 H -0.284 1.284 10 H -0.278 1.278 11 H -0.260 1.260 12 C 0.445 3.555 13 O -0.643 6.643 14 C -0.100 4.100 15 H 0.123 0.877 16 C -0.102 4.102 17 C -0.122 4.122 18 C 0.105 3.895 19 N -0.590 5.590 20 C 0.115 3.885 21 C 0.461 3.539 22 O -0.554 6.554 23 O -0.508 6.508 24 C 0.527 3.473 25 O -0.559 6.559 26 H 0.056 0.944 27 H 0.015 0.985 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.017 0.983 31 H 0.269 0.731 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.179 0.821 40 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.492 15.095 5.452 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.009 3.991 3 N -0.149 5.149 4 C -0.452 4.452 5 H 0.124 0.876 6 C -0.213 4.213 7 N -0.524 5.524 8 Si 0.811 3.189 9 H -0.210 1.210 10 H -0.203 1.203 11 H -0.185 1.185 12 C 0.234 3.766 13 O -0.533 6.533 14 C -0.124 4.124 15 H 0.141 0.859 16 C -0.141 4.141 17 C -0.159 4.159 18 C -0.015 4.015 19 N -0.323 5.323 20 C -0.009 4.009 21 C 0.303 3.697 22 O -0.444 6.444 23 O -0.321 6.321 24 C 0.315 3.685 25 O -0.437 6.437 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.077 0.923 38 H 0.139 0.861 39 H 0.196 0.804 40 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 8.184 14.391 5.311 17.387 hybrid contribution 0.496 -1.254 -0.290 1.379 sum 8.680 13.138 5.022 16.528 Atomic orbital electron populations 1.21703 0.95099 1.01172 0.99231 1.21200 0.95602 0.83498 0.98797 1.43971 1.53511 1.11192 1.06243 1.20095 1.32819 1.09685 0.82595 0.87555 1.26045 0.95946 0.97303 1.02029 1.70219 1.27533 1.27230 1.27467 0.85093 0.77916 0.78915 0.77009 1.21002 1.20347 1.18483 1.20116 0.83977 0.89093 0.83431 1.90472 1.59901 1.70857 1.32105 1.21127 0.93051 0.95145 1.03105 0.85901 1.21517 1.01910 0.96968 0.93660 1.21918 0.93087 0.95040 1.05837 1.21857 0.96006 0.94274 0.89413 1.47156 1.06711 1.39411 1.39018 1.21235 0.79611 1.00395 0.99643 1.24666 0.81053 0.82317 0.81634 1.90770 1.69269 1.45907 1.38450 1.84466 1.21605 1.62171 1.63858 1.19973 0.89400 0.79096 0.80055 1.90777 1.73643 1.42344 1.36919 0.92529 0.96545 0.91137 0.89464 0.96495 0.92083 0.90300 0.92922 0.89115 0.86046 0.85310 0.92348 0.86052 0.80392 0.71437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.67 9.50 71.98 0.68 -4.99 16 2 C 0.13 7.28 5.28 86.38 0.46 7.73 16 3 N -0.43 -24.32 2.63 -635.54 -1.67 -25.99 16 4 C -0.32 -17.66 7.95 84.04 0.67 -16.99 16 5 H 0.11 5.65 4.83 -2.91 -0.01 5.64 16 6 C -0.01 -0.64 5.08 84.92 0.43 -0.21 16 7 N -0.88 -46.77 8.24 21.66 0.18 -46.59 16 8 Si 0.99 42.13 29.58 68.60 2.03 44.16 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 12 C 0.44 23.92 6.47 87.66 0.57 24.49 16 13 O -0.64 -37.93 15.45 -3.07 -0.05 -37.97 16 14 C -0.10 -4.18 1.98 -12.43 -0.02 -4.20 16 15 H 0.12 4.90 7.24 -2.39 -0.02 4.88 16 16 C -0.10 -3.31 5.01 30.73 0.15 -3.16 16 17 C -0.12 -2.32 6.02 30.68 0.18 -2.13 16 18 C 0.11 2.00 6.39 86.49 0.55 2.56 16 19 N -0.59 -16.77 2.30 -830.98 -1.92 -18.69 16 20 C 0.12 2.60 5.79 85.63 0.50 3.10 16 21 C 0.46 12.74 8.38 71.24 0.60 13.34 16 22 O -0.55 -21.11 17.18 21.97 0.38 -20.74 16 23 O -0.51 -10.20 13.42 -51.35 -0.69 -10.89 16 24 C 0.53 21.19 6.77 87.72 0.59 21.79 16 25 O -0.56 -27.21 12.94 -3.04 -0.04 -27.25 16 26 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 3.70 6.48 -2.39 -0.02 3.68 16 29 H 0.09 4.97 5.88 -2.39 -0.01 4.95 16 30 H 0.02 0.95 7.54 -2.38 -0.02 0.93 16 31 H 0.27 13.45 8.31 -92.71 -0.77 12.67 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.05 2.02 7.48 -2.39 -0.02 2.00 16 34 H 0.09 1.48 8.12 -2.39 -0.02 1.47 16 35 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.13 1.14 7.92 -2.38 -0.02 1.12 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.12 3.04 7.20 -2.38 -0.02 3.02 16 39 H 0.18 1.79 7.86 -2.39 -0.02 1.77 16 40 H 0.42 5.48 9.10 -74.06 -0.67 4.80 16 Total: -1.00 -83.63 326.35 3.99 -79.64 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.41 Total: 23.01 kcal Atomic # 6 Polarization: 35.96 SS G_CDS: 5.36 Total: 41.32 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -3.41 Total: -91.27 kcal Atomic # 8 Polarization: -96.45 SS G_CDS: -0.40 Total: -96.85 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -83.63 3.99 -79.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603724049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.218 kcal (2) G-P(sol) polarization free energy of solvation -83.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds