Wall clock time and date at job start Tue Mar 31 2020 04:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47197 * 2 1 4 4 C 1.37101 * 119.99768 * 95.27495 * 3 2 1 5 5 H 1.08001 * 119.99938 * 220.59872 * 4 3 2 6 6 C 1.38949 * 120.00169 * 40.60231 * 4 3 2 7 7 N 1.31412 * 119.99932 * 191.64754 * 6 4 3 8 8 Si 1.86793 * 119.99845 * 11.64354 * 6 4 3 9 9 H 1.48501 * 109.46935 * 264.98032 * 8 6 4 10 10 H 1.48503 * 109.47489 * 24.98219 * 8 6 4 11 11 H 1.48505 * 109.47133 * 144.98445 * 8 6 4 12 12 C 1.34776 * 120.00285 * 275.27547 * 3 2 1 13 13 O 1.21293 * 119.99774 * 355.01183 * 12 3 2 14 14 C 1.50701 * 120.00063 * 175.01078 * 12 3 2 15 15 H 1.09001 * 109.39930 * 324.08094 * 14 12 3 16 16 C 1.53078 * 109.39928 * 204.33835 * 14 12 3 17 17 C 1.53326 * 108.43356 * 190.98162 * 16 14 12 18 18 C 1.52913 * 108.68974 * 67.50632 * 17 16 14 19 19 N 1.45748 * 110.48719 * 309.25792 * 18 17 16 20 20 C 1.46507 * 117.94746 * 199.07115 * 19 18 17 21 21 C 1.50694 * 109.47233 * 270.02201 * 20 19 18 22 22 O 1.20829 * 120.00117 * 359.97438 * 21 20 19 23 23 O 1.34237 * 119.99798 * 179.97438 * 21 20 19 24 24 C 1.33348 * 124.11167 * 19.09222 * 19 18 17 25 25 O 1.21282 * 118.25085 * 177.75395 * 24 19 18 26 26 H 1.08996 * 109.47145 * 304.99567 * 1 2 3 27 27 H 1.09004 * 109.47367 * 64.99426 * 1 2 3 28 28 H 1.09003 * 109.47178 * 184.99584 * 1 2 3 29 29 H 1.09004 * 109.46852 * 240.00300 * 2 1 3 30 30 H 1.08996 * 109.47228 * 120.00502 * 2 1 3 31 31 H 0.96999 * 119.99888 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.67231 * 310.70439 * 16 14 12 33 33 H 1.09001 * 109.67440 * 71.23797 * 16 14 12 34 34 H 1.09002 * 109.58777 * 307.74730 * 17 16 14 35 35 H 1.09003 * 109.73661 * 187.35216 * 17 16 14 36 36 H 1.08996 * 109.30228 * 188.94205 * 18 17 16 37 37 H 1.09005 * 109.29733 * 69.56436 * 18 17 16 38 38 H 1.09000 * 109.46684 * 30.02328 * 20 19 18 39 39 H 1.09001 * 109.47355 * 150.01528 * 20 19 18 40 40 H 0.96703 * 116.99452 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3497 1.9911 1.1823 5 1 2.0831 3.0240 1.3504 6 6 3.0287 1.2802 2.1643 7 7 3.1459 1.7794 3.3743 8 14 3.7747 -0.3850 1.7646 9 1 2.8223 -1.4585 2.1463 10 1 4.0539 -0.4657 0.3083 11 1 5.0411 -0.5547 2.5215 12 6 2.1418 2.0524 -1.1622 13 8 1.9356 1.4857 -2.2146 14 6 2.5359 3.5069 -1.1542 15 1 2.0868 3.9989 -0.2915 16 6 2.0357 4.1763 -2.4367 17 6 2.6758 5.5657 -2.5398 18 6 4.1780 5.3973 -2.7710 19 7 4.7466 4.4857 -1.7863 20 6 6.1952 4.5245 -1.5706 21 6 6.8688 3.5560 -2.5083 22 8 6.2068 2.9003 -3.2776 23 8 8.2043 3.4219 -2.4890 24 6 4.0312 3.6181 -1.0695 25 8 4.6194 2.8796 -0.3082 26 1 -0.3633 0.5894 0.8418 27 1 -0.3634 0.4344 -0.9314 28 1 -0.3634 -1.0238 0.0895 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.6196 1.2829 4.0599 32 1 2.3222 3.5756 -3.2999 33 1 0.9507 4.2738 -2.4007 34 1 2.5077 6.1152 -1.6135 35 1 2.2364 6.1125 -3.3742 36 1 4.6664 6.3681 -2.6877 37 1 4.3459 4.9976 -3.7712 38 1 6.5641 5.5321 -1.7622 39 1 6.4167 4.2463 -0.5402 40 1 8.5908 2.7881 -3.1087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603724055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:00 Heat of formation + Delta-G solvation = -137.270245 kcal Electronic energy + Delta-G solvation = -26203.197369 eV Core-core repulsion = 22405.062389 eV Total energy + Delta-G solvation = -3798.134981 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79944 -39.72138 -38.35903 -36.18476 -35.96210 -35.07725 -33.71850 -31.98344 -30.48045 -29.17862 -28.24973 -25.12434 -24.43193 -22.75464 -22.51671 -21.28070 -19.22395 -18.34246 -18.09777 -17.27280 -16.75070 -16.41932 -16.16715 -15.85497 -15.51925 -15.24310 -14.69396 -13.98437 -13.85211 -13.71080 -13.29919 -13.22287 -12.98136 -12.78765 -12.48311 -12.30817 -12.12138 -11.91236 -11.51224 -11.41840 -11.36042 -11.09185 -11.03871 -10.88356 -10.72876 -10.56413 -10.41482 -9.90199 -9.66028 -9.24874 -9.00335 -8.61871 -8.55919 -7.68340 -6.29084 -3.94721 2.31280 2.64263 3.16503 3.19181 3.32658 3.42675 3.47712 3.81119 4.28875 4.38310 4.78693 4.87347 4.98098 5.07628 5.13927 5.20953 5.29651 5.47294 5.54196 5.62935 5.77137 5.82475 5.87400 5.99470 6.07928 6.10379 6.19105 6.23699 6.45227 6.50204 6.55432 6.58538 6.64690 6.88464 7.52678 7.64973 7.96965 8.15304 8.30552 8.65723 9.06444 9.42242 9.72543 10.81979 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.006903 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.457580 B = 4055.511757 C = 4862.774749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.099 3.901 3 N -0.452 5.452 4 C -0.324 4.324 5 H 0.101 0.899 6 C 0.075 3.925 7 N -0.874 5.874 8 Si 0.890 3.110 9 H -0.281 1.281 10 H -0.263 1.263 11 H -0.293 1.293 12 C 0.499 3.501 13 O -0.592 6.592 14 C -0.099 4.099 15 H 0.124 0.876 16 C -0.110 4.110 17 C -0.132 4.132 18 C 0.116 3.884 19 N -0.599 5.599 20 C 0.122 3.878 21 C 0.458 3.542 22 O -0.500 6.500 23 O -0.521 6.521 24 C 0.534 3.466 25 O -0.496 6.496 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.272 0.728 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 9.155 -9.603 13.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 N -0.171 5.171 4 C -0.451 4.451 5 H 0.119 0.881 6 C -0.131 4.131 7 N -0.511 5.511 8 Si 0.720 3.280 9 H -0.209 1.209 10 H -0.187 1.187 11 H -0.220 1.220 12 C 0.286 3.714 13 O -0.477 6.477 14 C -0.123 4.123 15 H 0.141 0.859 16 C -0.148 4.148 17 C -0.170 4.170 18 C -0.007 4.007 19 N -0.335 5.335 20 C -0.004 4.004 21 C 0.298 3.702 22 O -0.386 6.386 23 O -0.333 6.333 24 C 0.322 3.678 25 O -0.368 6.368 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.481 8.501 -9.404 13.146 hybrid contribution 0.812 -1.251 -0.357 1.533 sum 4.293 7.250 -9.761 12.894 Atomic orbital electron populations 1.22017 0.96300 1.00945 1.02198 1.21568 0.94401 0.85555 1.00886 1.43679 1.55935 1.11320 1.06213 1.18844 1.36435 0.99121 0.90718 0.88146 1.25185 0.94572 0.98476 0.94824 1.69650 1.40565 1.39201 1.01698 0.86757 0.78347 0.83239 0.79699 1.20893 1.18703 1.22041 1.19556 0.80459 0.87727 0.83655 1.90544 1.56217 1.69616 1.31308 1.21102 0.92548 0.97443 1.01201 0.85855 1.21568 1.00779 0.94741 0.97709 1.21864 0.93763 0.98127 1.03212 1.21433 0.94763 0.92521 0.91989 1.47099 1.04946 1.39814 1.41669 1.20809 0.81407 0.97962 1.00219 1.24337 0.80201 0.82717 0.82992 1.90761 1.65188 1.44046 1.38641 1.84520 1.23756 1.62513 1.62484 1.19730 0.89484 0.79210 0.79422 1.90832 1.70258 1.39431 1.36235 0.91876 0.92729 0.92922 0.91535 0.91883 0.91811 0.89848 0.90682 0.90759 0.89698 0.90873 0.91744 0.86452 0.85188 0.73484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 10.20 37.16 0.38 -2.71 16 2 C 0.10 2.34 4.45 -4.05 -0.02 2.32 16 3 N -0.45 -11.54 2.20 -114.81 -0.25 -11.79 16 4 C -0.32 -8.78 7.66 -14.93 -0.11 -8.90 16 5 H 0.10 2.79 6.71 -52.49 -0.35 2.44 16 6 C 0.08 2.12 5.42 -17.47 -0.09 2.02 16 7 N -0.87 -25.32 13.96 55.50 0.77 -24.54 16 8 Si 0.89 23.07 24.61 -169.99 -4.18 18.89 16 9 H -0.28 -6.84 6.83 56.52 0.39 -6.45 16 10 H -0.26 -7.18 6.85 56.52 0.39 -6.80 16 11 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 12 C 0.50 12.21 6.35 -10.99 -0.07 12.14 16 13 O -0.59 -15.48 15.49 5.55 0.09 -15.40 16 14 C -0.10 -2.00 2.12 -93.14 -0.20 -2.19 16 15 H 0.12 2.42 6.59 -51.93 -0.34 2.08 16 16 C -0.11 -1.72 5.06 -26.52 -0.13 -1.86 16 17 C -0.13 -1.47 6.02 -26.61 -0.16 -1.63 16 18 C 0.12 1.34 6.39 -4.49 -0.03 1.31 16 19 N -0.60 -9.44 2.30 -176.34 -0.41 -9.84 16 20 C 0.12 1.63 5.79 -5.19 -0.03 1.60 16 21 C 0.46 6.90 8.38 36.00 0.30 7.20 16 22 O -0.50 -9.64 17.18 -18.75 -0.32 -9.96 16 23 O -0.52 -6.07 13.42 -39.27 -0.53 -6.60 16 24 C 0.53 11.05 7.00 -11.87 -0.08 10.97 16 25 O -0.50 -12.42 14.15 5.56 0.08 -12.34 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.60 7.52 -51.93 -0.39 1.21 16 30 H 0.06 1.53 3.16 -51.93 -0.16 1.37 16 31 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.08 1.48 7.45 -51.93 -0.39 1.09 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.59 7.92 -51.93 -0.41 0.18 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.12 1.00 7.86 -51.93 -0.41 0.59 16 39 H 0.13 1.90 7.20 -51.93 -0.37 1.53 16 40 H 0.41 3.16 9.10 45.56 0.41 3.58 16 LS Contribution 327.74 15.07 4.94 4.94 Total: -1.00 -37.45 327.74 -4.60 -42.05 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.54 Total: 4.32 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: -0.25 Total: 20.27 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.12 Total: -46.17 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.68 Total: -44.30 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.18 Total: 18.89 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.45 -4.60 -42.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603724055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.216 kcal (2) G-P(sol) polarization free energy of solvation -37.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds