Wall clock time and date at job start Tue Mar 31 2020 04:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86792 * 120.00159 * 2 1 4 4 H 1.48499 * 109.47474 * 239.99606 * 3 2 1 5 5 H 1.48507 * 109.47360 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47536 * 119.99527 * 3 2 1 7 7 C 1.37876 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00088 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.64606 * 298.30174 * 9 7 2 11 11 C 1.54594 * 110.72474 * 61.45304 * 9 7 2 12 12 C 1.53991 * 105.14285 * 140.31365 * 11 9 7 13 13 N 1.47905 * 107.22505 * 1.12969 * 12 11 9 14 14 C 1.46897 * 111.00050 * 214.25344 * 13 12 11 15 15 H 1.08997 * 110.43589 * 190.57379 * 14 13 12 16 16 C 1.54632 * 110.48463 * 68.03222 * 14 13 12 17 17 C 1.54481 * 101.76390 * 216.52179 * 16 14 13 18 18 N 1.46765 * 105.47386 * 25.41860 * 17 16 14 19 19 C 1.46500 * 124.35233 * 162.98303 * 18 17 16 20 20 C 1.50702 * 109.47299 * 89.99802 * 19 18 17 21 21 O 1.20827 * 119.99743 * 359.97438 * 20 19 18 22 22 O 1.34224 * 120.00274 * 180.02562 * 20 19 18 23 23 C 1.34655 * 111.33663 * 342.86695 * 18 17 16 24 24 O 1.21280 * 125.07761 * 180.50818 * 23 18 17 25 25 C 1.48813 * 105.67450 * 334.90354 * 13 12 11 26 26 H 0.97003 * 120.00498 * 0.02562 * 1 2 3 27 27 H 0.96703 * 113.99663 * 61.69320 * 10 9 7 28 28 H 1.09005 * 110.30718 * 21.40171 * 11 9 7 29 29 H 1.08997 * 110.30992 * 259.23691 * 11 9 7 30 30 H 1.09002 * 109.91707 * 120.58029 * 12 11 9 31 31 H 1.09002 * 109.91668 * 241.67819 * 12 11 9 32 32 H 1.08998 * 110.97129 * 334.64163 * 16 14 13 33 33 H 1.08994 * 110.97135 * 98.40848 * 16 14 13 34 34 H 1.09007 * 110.24685 * 144.41523 * 17 16 14 35 35 H 1.09002 * 110.24832 * 266.33279 * 17 16 14 36 36 H 1.08995 * 109.46938 * 209.99874 * 19 18 17 37 37 H 1.09001 * 109.46723 * 329.99766 * 19 18 17 38 38 H 0.96690 * 117.00117 * 180.02562 * 22 20 19 39 39 H 1.08998 * 110.51915 * 280.54171 * 25 13 12 40 40 H 1.09009 * 110.83927 * 157.56590 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4495 -2.6183 1.1776 11 6 0.3795 -2.6277 -1.2699 12 6 0.5075 -4.1014 -1.6980 13 7 1.3785 -4.7711 -0.7078 14 6 2.1997 -5.8088 -1.3456 15 1 2.6959 -6.4188 -0.5908 16 6 3.2401 -5.1687 -2.2938 17 6 3.2829 -6.1915 -3.4508 18 7 1.9792 -6.8650 -3.4265 19 6 1.4323 -7.6478 -4.5376 20 6 1.8590 -9.0862 -4.3966 21 8 2.5496 -9.4229 -3.4640 22 8 1.4729 -9.9932 -5.3076 23 6 1.3507 -6.6737 -2.2511 24 8 0.2636 -7.1260 -1.9603 25 6 2.2269 -3.6957 -0.1263 26 1 -0.4851 0.8400 -0.0004 27 1 -0.2287 -1.9342 1.2625 28 1 0.7559 -1.9717 -2.0549 29 1 -0.6592 -2.3888 -1.0419 30 1 -0.4755 -4.5723 -1.7065 31 1 0.9569 -4.1624 -2.6892 32 1 2.8997 -4.1951 -2.6463 33 1 4.2126 -5.0880 -1.8084 34 1 3.4250 -5.6789 -4.4023 35 1 4.0843 -6.9121 -3.2878 36 1 0.3441 -7.5885 -4.5227 37 1 1.8051 -7.2490 -5.4810 38 1 1.7711 -10.9033 -5.1747 39 1 3.0492 -3.4519 -0.7990 40 1 2.6065 -3.9881 0.8529 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605581865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:29 Heat of formation + Delta-G solvation = -177.007609 kcal Electronic energy + Delta-G solvation = -25334.614765 eV Core-core repulsion = 21534.756643 eV Total energy + Delta-G solvation = -3799.858122 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.17711 -41.04365 -39.55816 -37.61214 -37.14522 -36.40659 -34.13012 -33.49339 -30.90103 -29.89223 -28.81733 -27.69062 -26.02784 -23.60123 -23.26775 -21.77093 -21.04481 -20.22126 -19.26341 -18.99885 -18.17345 -17.77838 -17.36336 -17.05940 -16.85887 -16.68716 -16.14584 -15.72632 -15.23629 -15.02285 -14.81987 -14.51917 -14.25552 -14.06150 -13.83292 -13.59416 -13.38766 -13.17401 -13.08038 -12.81371 -12.58783 -12.56737 -12.46566 -12.30587 -12.19119 -12.13909 -11.84005 -11.68396 -11.12919 -10.83192 -10.55202 -10.07256 -9.97537 -9.21967 -8.16720 -6.33242 1.12141 1.28647 1.45455 1.47618 1.54409 1.59141 2.33555 2.42057 2.98189 3.09122 3.24739 3.67527 3.81827 3.95657 4.02424 4.09969 4.14449 4.20908 4.26387 4.29216 4.42801 4.58348 4.62656 4.74273 4.87522 4.94000 5.06205 5.11187 5.21896 5.33805 5.47049 5.56350 5.58967 5.75207 5.80140 5.89784 6.13041 6.25496 6.73721 6.89627 7.02736 7.38740 7.50462 8.88692 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.003629 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.168043 B = 7713.591888 C = 7924.150880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.558 4.558 8 H 0.063 0.937 9 C 0.237 3.763 10 O -0.593 6.593 11 C -0.115 4.115 12 C 0.049 3.951 13 N -0.511 5.511 14 C 0.040 3.960 15 H 0.119 0.881 16 C -0.159 4.159 17 C 0.111 3.889 18 N -0.608 5.608 19 C 0.131 3.869 20 C 0.464 3.536 21 O -0.549 6.549 22 O -0.508 6.508 23 C 0.525 3.475 24 O -0.556 6.556 25 C 0.062 3.938 26 H 0.267 0.733 27 H 0.371 0.629 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.172 0.828 38 H 0.428 0.572 39 H 0.077 0.923 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.846 -12.706 -14.597 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.172 4.172 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.596 4.596 8 H 0.081 0.919 9 C 0.197 3.803 10 O -0.401 6.401 11 C -0.154 4.154 12 C -0.079 4.079 13 N -0.235 5.235 14 C -0.072 4.072 15 H 0.137 0.863 16 C -0.198 4.198 17 C -0.011 4.011 18 N -0.343 5.343 19 C 0.007 3.993 20 C 0.306 3.694 21 O -0.439 6.439 22 O -0.321 6.321 23 C 0.313 3.687 24 O -0.433 6.433 25 C -0.065 4.065 26 H 0.076 0.924 27 H 0.219 0.781 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.142 0.858 37 H 0.190 0.810 38 H 0.290 0.710 39 H 0.095 0.905 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.223 -13.382 -13.829 20.555 hybrid contribution 0.229 0.990 -0.175 1.031 sum 7.452 -12.392 -14.004 20.130 Atomic orbital electron populations 1.69840 1.07074 1.28123 1.50298 1.25728 0.95717 1.02401 0.93402 0.85574 0.78332 0.78605 0.78848 1.19116 1.21217 1.20092 1.21837 0.93764 0.91667 1.52320 0.91861 1.19658 0.87290 0.91599 0.81735 1.86152 1.51622 1.55990 1.46322 1.22706 1.00071 0.92914 0.99734 1.22740 0.96841 0.94604 0.93711 1.64821 1.18418 1.11160 1.29088 1.22739 0.93601 0.94815 0.96030 0.86336 1.23295 1.01242 0.99153 0.96114 1.22343 0.83168 0.94464 1.01105 1.48095 1.21197 1.50674 1.14293 1.21057 1.02416 0.83420 0.92360 1.24449 0.75915 0.90365 0.78647 1.90736 1.37771 1.81746 1.33644 1.84472 1.72095 1.24423 1.51090 1.21024 0.85048 0.79730 0.82881 1.90676 1.22074 1.53312 1.77193 1.23223 0.94806 0.89429 0.99064 0.92352 0.78109 0.92779 0.94117 0.93186 0.92888 0.89735 0.86482 0.86395 0.89459 0.85840 0.81040 0.71014 0.90462 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.01 11.00 21.45 0.24 -48.78 16 2 C 0.03 1.45 5.28 84.66 0.45 1.90 16 3 Si 0.96 40.97 29.54 68.60 2.03 42.99 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.56 -28.91 8.14 25.60 0.21 -28.70 16 8 H 0.06 3.16 7.78 -2.91 -0.02 3.14 16 9 C 0.24 11.74 0.96 -10.34 -0.01 11.73 16 10 O -0.59 -32.51 13.10 -148.98 -1.95 -34.47 16 11 C -0.12 -5.40 5.26 31.47 0.17 -5.23 16 12 C 0.05 1.97 5.16 86.44 0.45 2.41 16 13 N -0.51 -20.22 5.44 -857.11 -4.66 -24.88 16 14 C 0.04 1.24 3.36 44.91 0.15 1.40 16 15 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 16 C -0.16 -3.40 4.75 31.65 0.15 -3.25 16 17 C 0.11 1.75 7.35 86.83 0.64 2.39 16 18 N -0.61 -13.52 2.43 -821.95 -1.99 -15.51 16 19 C 0.13 2.08 6.52 85.63 0.56 2.64 16 20 C 0.46 8.77 8.40 71.24 0.60 9.36 16 21 O -0.55 -14.99 17.19 21.96 0.38 -14.61 16 22 O -0.51 -6.30 13.42 -51.36 -0.69 -6.99 16 23 C 0.53 17.02 6.11 87.86 0.54 17.56 16 24 O -0.56 -22.93 17.33 -3.03 -0.05 -22.98 16 25 C 0.06 2.54 5.45 86.59 0.47 3.01 16 26 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 27 H 0.37 20.70 7.46 -74.06 -0.55 20.15 16 28 H 0.05 2.55 7.84 -2.38 -0.02 2.53 16 29 H 0.04 2.08 7.98 -2.39 -0.02 2.06 16 30 H 0.05 2.19 8.00 -2.39 -0.02 2.17 16 31 H 0.05 1.84 6.05 -2.39 -0.01 1.83 16 32 H 0.08 2.02 6.00 -2.39 -0.01 2.01 16 33 H 0.12 2.01 8.12 -2.39 -0.02 1.99 16 34 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.12 2.10 7.94 -2.39 -0.02 2.08 16 37 H 0.17 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.43 2.13 9.10 -74.06 -0.67 1.46 16 39 H 0.08 2.78 5.91 -2.39 -0.01 2.77 16 40 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 Total: -1.00 -75.21 328.69 -2.48 -77.69 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -0.13 Total: 32.32 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 4.36 Total: 15.21 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -6.42 Total: -89.17 kcal Atomic # 8 Polarization: -76.74 SS G_CDS: -2.32 Total: -79.05 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -75.21 -2.48 -77.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.321 kcal (2) G-P(sol) polarization free energy of solvation -75.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds