Wall clock time and date at job start Tue Mar 31 2020 03:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00074 * 2 1 4 4 H 1.48504 * 109.46993 * 239.99749 * 3 2 1 5 5 H 1.48501 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47216 * 119.99690 * 3 2 1 7 7 C 1.37874 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00326 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00171 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47609 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47331 * 179.97438 * 10 9 7 12 12 C 1.47437 * 111.00186 * 69.15924 * 11 10 9 13 13 C 1.54315 * 107.23576 * 123.25441 * 12 11 10 14 14 C 1.55140 * 103.01670 * 22.28531 * 13 12 11 15 15 C 1.47851 * 110.99902 * 190.00143 * 11 10 9 16 16 H 1.09007 * 110.37103 * 332.57594 * 15 11 10 17 17 C 1.50702 * 110.37315 * 94.80708 * 15 11 10 18 18 O 1.21278 * 119.99773 * 19.77852 * 17 15 11 19 19 N 1.34773 * 119.99870 * 199.78058 * 17 15 11 20 20 C 1.46381 * 119.64858 * 354.83279 * 19 17 15 21 21 C 1.53239 * 109.49084 * 245.08789 * 20 19 17 22 22 S 1.81745 * 108.79393 * 302.34416 * 21 20 19 23 23 C 1.81741 * 102.30925 * 54.53936 * 22 21 20 24 24 C 1.46379 * 119.64923 * 174.81091 * 19 17 15 25 25 H 0.97006 * 119.99616 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47277 * 59.98890 * 9 7 2 27 27 H 1.09002 * 109.46850 * 299.99244 * 9 7 2 28 28 H 1.09001 * 109.47142 * 59.99500 * 10 9 7 29 29 H 1.08997 * 109.47344 * 300.00145 * 10 9 7 30 30 H 1.08996 * 109.89215 * 242.66665 * 12 11 10 31 31 H 1.09007 * 109.89061 * 3.69012 * 12 11 10 32 32 H 1.09000 * 110.70425 * 140.66588 * 13 12 11 33 33 H 1.09004 * 110.71099 * 263.90012 * 13 12 11 34 34 H 1.09001 * 110.98701 * 206.25136 * 14 13 12 35 35 H 1.09001 * 110.99190 * 82.43949 * 14 13 12 36 36 H 1.09002 * 109.46893 * 125.07532 * 20 19 17 37 37 H 1.09004 * 109.46857 * 5.09531 * 20 19 17 38 38 H 1.08995 * 109.58339 * 182.54743 * 21 20 19 39 39 H 1.09001 * 109.69388 * 62.19977 * 21 20 19 40 40 H 1.08995 * 109.58514 * 65.25046 * 23 22 21 41 41 H 1.08995 * 109.58106 * 185.66348 * 23 22 21 42 42 H 1.09002 * 109.46793 * 234.92391 * 24 19 17 43 43 H 1.09006 * 109.46385 * 354.90562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9342 0.0012 12 6 0.8220 -5.1474 -1.2849 13 6 1.3179 -6.4944 -1.8514 14 6 1.8285 -7.2376 -0.5890 15 6 2.4231 -6.0727 0.2409 16 1 3.4286 -5.8325 -0.1050 17 6 2.4442 -6.4288 1.7051 18 8 1.5380 -6.0735 2.4286 19 7 3.4699 -7.1422 2.2104 20 6 4.5011 -7.6639 1.3119 21 6 4.4589 -9.1957 1.3201 22 16 4.6951 -9.7788 3.0252 23 6 3.3908 -8.8874 3.9237 24 6 3.5413 -7.3865 3.6519 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 -0.2557 -5.1859 -1.1266 31 1 1.0666 -4.3397 -1.9749 32 1 0.4980 -7.0423 -2.3160 33 1 2.1299 -6.3384 -2.5617 34 1 2.5980 -7.9647 -0.8486 35 1 1.0055 -7.7154 -0.0575 36 1 5.4811 -7.3256 1.6483 37 1 4.3191 -7.3009 0.3003 38 1 5.2552 -9.5865 0.6868 39 1 3.4938 -9.5387 0.9472 40 1 2.4135 -9.2250 3.5789 41 1 3.4887 -9.0767 4.9926 42 1 4.5037 -7.0430 4.0313 43 1 2.7391 -6.8441 4.1524 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067118005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:15 Heat of formation + Delta-G solvation = -48.440725 kcal Electronic energy + Delta-G solvation = -22894.311590 eV Core-core repulsion = 19678.614512 eV Total energy + Delta-G solvation = -3215.697078 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.58011 -39.39986 -37.41211 -35.66800 -33.70916 -33.05708 -31.44163 -30.41754 -29.87537 -26.38912 -25.09398 -24.58835 -23.28881 -22.61198 -21.31571 -20.10023 -18.84082 -18.59639 -17.34365 -17.18242 -16.68140 -16.54973 -16.32203 -15.93331 -15.42505 -15.03312 -14.93652 -14.79997 -14.50552 -14.37995 -14.19358 -13.82668 -13.66812 -13.39824 -13.25382 -13.05858 -12.80265 -12.69135 -12.60790 -12.38700 -12.14563 -11.99699 -11.88965 -11.62252 -11.44264 -11.27601 -10.88171 -10.74636 -10.57447 -9.98366 -9.17132 -8.70650 -8.21574 -6.34474 0.72203 1.37972 1.42374 1.48883 1.50170 1.52759 1.81010 2.38742 3.03630 3.11372 3.40259 3.59495 3.66733 3.78063 3.92167 3.96248 4.03064 4.10716 4.15746 4.31992 4.36393 4.38798 4.45049 4.54209 4.63311 4.66123 4.75410 4.79703 4.82858 4.90833 4.95807 5.00397 5.07692 5.28527 5.39183 5.43407 5.60821 5.74449 6.01931 6.05853 6.27637 6.31721 6.82525 7.16649 7.34951 8.90758 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.021302 B = 0.003578 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.093828 B = 7824.344975 C = 8472.831460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.040 3.960 10 C 0.084 3.916 11 N -0.539 5.539 12 C 0.041 3.959 13 C -0.125 4.125 14 C -0.104 4.104 15 C 0.051 3.949 16 H 0.096 0.904 17 C 0.520 3.480 18 O -0.562 6.562 19 N -0.619 5.619 20 C 0.099 3.901 21 C -0.091 4.091 22 S -0.278 6.278 23 C -0.087 4.087 24 C 0.108 3.892 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.022 1.022 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.145 0.855 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.129 0.871 42 H 0.095 0.905 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.218 -22.684 -0.863 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.003 3.997 10 C -0.044 4.044 11 N -0.263 5.263 12 C -0.086 4.086 13 C -0.163 4.163 14 C -0.142 4.142 15 C -0.061 4.061 16 H 0.114 0.886 17 C 0.308 3.692 18 O -0.438 6.438 19 N -0.353 5.353 20 C -0.025 4.025 21 C -0.240 4.240 22 S -0.052 6.052 23 C -0.236 4.236 24 C -0.016 4.016 25 H 0.073 0.927 26 H 0.014 0.986 27 H -0.004 1.004 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.139 0.861 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.133 0.867 38 H 0.162 0.838 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.147 0.853 42 H 0.113 0.887 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.974 -23.087 0.327 26.010 hybrid contribution -0.624 2.078 -0.555 2.240 sum 11.350 -21.009 -0.229 23.880 Atomic orbital electron populations 1.70133 1.08028 1.27899 1.51239 1.26035 0.95762 1.03568 0.94479 0.85436 0.78219 0.77662 0.79324 1.18557 1.20796 1.19298 1.21583 0.93537 0.92129 1.51239 0.91919 1.18852 0.94116 0.92182 0.94558 1.22056 0.95183 0.88551 0.98578 1.62973 1.28535 1.01257 1.33581 1.22810 0.98850 0.98362 0.88590 1.22773 1.02447 0.93845 0.97209 1.22700 1.01449 0.95358 0.94652 1.22661 0.97938 0.93728 0.91775 0.88608 1.21031 0.80854 0.76725 0.90585 1.90685 1.37530 1.53938 1.61688 1.48051 1.25133 1.54133 1.08021 1.22116 0.91993 0.92651 0.95736 1.23940 1.07773 0.97527 0.94780 1.86966 1.47041 1.62685 1.08544 1.23750 0.99279 0.96229 1.04334 1.21646 1.03993 0.94926 0.81056 0.92734 0.98609 1.00392 0.93632 0.94417 0.92529 0.93306 0.88556 0.89012 0.86110 0.91601 0.88544 0.86707 0.83758 0.89041 0.90485 0.85301 0.88701 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.22 13.29 21.45 0.28 -58.93 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.55 -32.34 9.11 25.60 0.23 -32.11 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.04 2.30 4.99 29.85 0.15 2.45 16 10 C 0.08 3.73 4.47 86.30 0.39 4.12 16 11 N -0.54 -20.78 4.42 -865.01 -3.82 -24.61 16 12 C 0.04 1.37 6.20 86.65 0.54 1.91 16 13 C -0.12 -2.55 6.94 31.77 0.22 -2.33 16 14 C -0.10 -2.01 6.23 31.98 0.20 -1.81 16 15 C 0.05 1.39 1.79 44.64 0.08 1.47 16 16 H 0.10 2.19 6.36 -2.38 -0.02 2.18 16 17 C 0.52 16.15 6.93 87.66 0.61 16.76 16 18 O -0.56 -23.94 15.92 -3.02 -0.05 -23.99 16 19 N -0.62 -13.62 2.79 -821.41 -2.29 -15.91 16 20 C 0.10 1.29 6.01 86.48 0.52 1.81 16 21 C -0.09 -0.96 6.67 72.06 0.48 -0.48 16 22 S -0.28 -4.36 22.29 -56.49 -1.26 -5.62 16 23 C -0.09 -1.47 6.67 72.07 0.48 -0.99 16 24 C 0.11 2.26 6.21 86.49 0.54 2.80 16 25 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 26 H 0.00 -0.27 7.09 -2.39 -0.02 -0.28 16 27 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 28 H 0.05 2.08 8.08 -2.39 -0.02 2.06 16 29 H 0.04 1.54 7.99 -2.39 -0.02 1.52 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.76 6.87 -2.38 -0.02 1.74 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.12 1.26 7.56 -2.39 -0.02 1.25 16 35 H 0.07 1.49 8.05 -2.39 -0.02 1.47 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.12 1.17 4.76 -2.38 -0.01 1.15 16 38 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 2.12 6.91 -2.38 -0.02 2.10 16 Total: -1.00 -79.87 348.38 0.76 -79.11 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.98 Total: 8.68 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 4.89 Total: -5.97 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -5.83 Total: -99.45 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -1.26 Total: -5.62 kcal Total: -79.87 0.76 -79.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067118005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.669 kcal (2) G-P(sol) polarization free energy of solvation -79.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds