Wall clock time and date at job start Tue Mar 31 2020 04:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00088 * 2 1 4 4 O 1.20822 * 120.00113 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99896 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.47289 * 179.97438 * 5 3 2 7 7 C 1.36930 * 119.99870 * 270.00254 * 6 5 3 8 8 H 1.07997 * 120.00049 * 16.22582 * 7 6 5 9 9 C 1.38815 * 119.99906 * 196.23448 * 7 6 5 10 10 N 1.31615 * 120.00005 * 22.11763 * 9 7 6 11 11 Si 1.86794 * 119.99971 * 202.11879 * 9 7 6 12 12 H 1.48500 * 109.47238 * 59.99791 * 11 9 7 13 13 H 1.48498 * 109.47207 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47401 * 299.99971 * 11 9 7 15 15 C 1.46505 * 119.99864 * 89.99224 * 6 5 3 16 16 C 1.50700 * 109.46622 * 84.01542 * 15 6 5 17 17 O 1.21283 * 120.00303 * 359.97438 * 16 15 6 18 18 N 1.34776 * 119.99739 * 179.97438 * 16 15 6 19 19 C 1.46924 * 120.63141 * 359.71625 * 18 16 15 20 20 C 1.53626 * 108.54215 * 126.36900 * 19 18 16 21 21 C 1.53040 * 109.23946 * 54.86006 * 20 19 18 22 22 C 1.53002 * 109.44810 * 178.49744 * 21 20 19 23 23 C 1.53046 * 109.53844 * 298.50739 * 21 20 19 24 24 C 1.46926 * 120.62892 * 180.02562 * 18 16 15 25 25 H 1.08997 * 109.47292 * 300.00050 * 1 2 3 26 26 H 1.09001 * 109.47243 * 60.00327 * 1 2 3 27 27 H 1.09001 * 109.47133 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47827 * 59.99478 * 5 3 2 29 29 H 1.09002 * 109.47013 * 299.99148 * 5 3 2 30 30 H 0.96998 * 120.00112 * 180.02562 * 10 9 7 31 31 H 1.08994 * 109.46927 * 204.01016 * 15 6 5 32 32 H 1.08998 * 109.47105 * 324.01659 * 15 6 5 33 33 H 1.08998 * 109.58768 * 246.20167 * 19 18 16 34 34 H 1.08997 * 109.58686 * 6.63043 * 19 18 16 35 35 H 1.08997 * 109.63650 * 294.86873 * 20 19 18 36 36 H 1.08998 * 109.43630 * 174.72616 * 20 19 18 37 37 H 1.08996 * 109.46179 * 58.52910 * 21 20 19 38 38 H 1.09001 * 109.46918 * 180.02562 * 22 21 20 39 39 H 1.08995 * 109.47354 * 300.06121 * 22 21 20 40 40 H 1.08996 * 109.47018 * 60.06229 * 22 21 20 41 41 H 1.08998 * 109.49868 * 301.41566 * 23 21 20 42 42 H 1.09001 * 109.49646 * 181.31563 * 23 21 20 43 43 H 1.09001 * 109.59055 * 353.37119 * 24 18 16 44 44 H 1.09000 * 109.58854 * 113.65563 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.1754 3.3359 -1.1872 8 1 3.7804 2.9229 -2.1036 9 6 4.8796 4.5320 -1.2117 10 7 5.7159 4.8234 -0.2381 11 14 4.6403 5.7278 -2.6266 12 1 3.2172 6.1481 -2.6842 13 1 5.5000 6.9204 -2.4176 14 1 5.0129 5.0659 -3.9027 15 6 4.1898 3.3825 1.2675 16 6 5.5799 3.0996 1.7762 17 8 6.3233 2.3814 1.1419 18 7 5.9968 3.6449 2.9361 19 6 5.1099 4.5219 3.7125 20 6 5.0254 3.9834 5.1488 21 6 6.4383 3.8524 5.7221 22 6 6.3579 3.3518 7.1657 23 6 7.2416 2.8572 4.8815 24 6 7.3493 3.3789 3.4447 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.9558 0.7808 -0.8907 29 1 3.9563 0.7806 0.8892 30 1 6.2077 5.6593 -0.2550 31 1 4.0709 4.4548 1.1125 32 1 3.4583 3.0375 1.9981 33 1 5.5140 5.5342 3.7220 34 1 4.1166 4.5269 3.2637 35 1 4.5420 3.0065 5.1459 36 1 4.4468 4.6744 5.7618 37 1 6.9301 4.8249 5.7019 38 1 7.3640 3.2588 7.5746 39 1 5.7858 4.0604 7.7647 40 1 5.8666 2.3791 7.1861 41 1 6.7372 1.8909 4.8811 42 1 8.2402 2.7467 5.3042 43 1 7.8342 2.6294 2.8191 44 1 7.9327 4.2995 3.4305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080896720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:19 Heat of formation + Delta-G solvation = -94.728941 kcal Electronic energy + Delta-G solvation = -25791.585998 eV Core-core repulsion = 22131.128841 eV Total energy + Delta-G solvation = -3660.457157 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.65356 -39.22057 -37.08450 -35.89407 -34.77058 -33.21873 -31.44293 -30.89038 -28.70274 -27.98809 -26.77983 -25.98085 -23.12800 -22.93076 -22.01478 -20.32682 -19.86629 -18.38371 -16.93697 -16.85589 -16.09957 -15.77882 -15.70430 -14.99030 -14.85823 -14.46179 -14.26642 -14.04291 -13.67975 -13.36747 -13.23373 -12.96475 -12.65944 -12.56116 -12.44787 -12.10525 -11.68703 -11.62630 -11.54351 -11.36105 -11.00323 -10.93281 -10.79002 -10.69454 -10.39482 -10.27336 -10.24899 -10.15142 -10.06868 -9.95412 -9.78407 -8.88239 -8.28593 -7.70833 -7.02502 -5.87242 -3.20360 3.05336 3.30633 3.43849 3.45277 3.49441 3.92808 4.16173 4.49422 4.86749 4.89206 4.99250 5.28112 5.33069 5.38791 5.41400 5.46907 5.51197 5.60346 5.62592 5.67691 5.71575 5.78228 5.89364 5.90195 6.00437 6.08701 6.11212 6.15827 6.18870 6.26144 6.30730 6.34006 6.45005 6.58179 6.70122 6.99401 7.07425 7.44381 7.70580 8.12938 8.50344 8.60395 9.04389 9.59680 9.74176 10.11410 11.21958 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.011506 B = 0.005794 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.839269 B = 4831.157276 C = 6532.136902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.376 6.376 3 C 0.419 3.581 4 O -0.498 6.498 5 C 0.161 3.839 6 N -0.542 5.542 7 C -0.257 4.257 8 H 0.076 0.924 9 C 0.009 3.991 10 N -0.891 5.891 11 Si 0.907 3.093 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.283 1.283 15 C 0.165 3.835 16 C 0.534 3.466 17 O -0.529 6.529 18 N -0.626 5.626 19 C 0.118 3.882 20 C -0.129 4.129 21 C -0.091 4.091 22 C -0.145 4.145 23 C -0.126 4.126 24 C 0.118 3.882 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.255 0.745 31 H 0.107 0.893 32 H 0.036 0.964 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.577 -3.960 12.095 12.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.293 6.293 3 C 0.258 3.742 4 O -0.383 6.383 5 C 0.029 3.971 6 N -0.258 5.258 7 C -0.386 4.386 8 H 0.093 0.907 9 C -0.190 4.190 10 N -0.534 5.534 11 Si 0.737 3.263 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.209 1.209 15 C 0.035 3.965 16 C 0.322 3.678 17 O -0.403 6.403 18 N -0.364 5.364 19 C -0.006 4.006 20 C -0.168 4.168 21 C -0.110 4.110 22 C -0.202 4.202 23 C -0.165 4.165 24 C -0.006 4.006 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.288 -3.880 11.683 12.521 hybrid contribution -0.282 0.990 -0.639 1.212 sum -2.570 -2.890 11.043 11.701 Atomic orbital electron populations 1.23049 0.78804 1.02343 1.01811 1.86614 1.21818 1.35856 1.84988 1.26988 0.94778 0.80647 0.71806 1.90583 1.66957 1.36434 1.44309 1.20338 0.84581 0.88710 1.03500 1.43389 1.73844 1.05718 1.02874 1.19093 1.29776 1.03538 0.86162 0.90662 1.24774 0.96280 0.99687 0.98267 1.69951 1.25125 1.24054 1.34276 0.86292 0.77605 0.80634 0.81819 1.20999 1.21691 1.20895 1.20599 0.89826 1.00138 0.85913 1.21816 0.91314 0.77280 0.77347 1.90502 1.56519 1.38518 1.54715 1.48191 1.13699 1.50825 1.23643 1.21560 0.95114 0.93403 0.90564 1.22084 0.96531 1.01677 0.96499 1.21101 0.96267 0.99246 0.94379 1.21829 1.01301 1.01029 0.96086 1.21984 0.99755 0.98941 0.95795 1.21276 0.85513 1.00440 0.93360 0.92761 0.92636 0.89237 0.88632 0.89985 0.93443 0.87556 0.94600 0.92457 0.90005 0.91748 0.91492 0.91337 0.92980 0.92947 0.92864 0.91914 0.91739 0.89669 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 101.05 1.07 1.54 16 2 O -0.38 -6.51 10.56 -39.25 -0.41 -6.93 16 3 C 0.42 8.55 8.03 36.00 0.29 8.84 16 4 O -0.50 -11.63 16.18 -18.75 -0.30 -11.93 16 5 C 0.16 3.40 6.23 -5.19 -0.03 3.37 16 6 N -0.54 -13.58 1.52 -175.98 -0.27 -13.85 16 7 C -0.26 -7.08 9.66 -15.06 -0.15 -7.22 16 8 H 0.08 2.06 7.92 -52.49 -0.42 1.64 16 9 C 0.01 0.24 4.86 -17.43 -0.08 0.15 16 10 N -0.89 -24.92 9.31 55.49 0.52 -24.40 16 11 Si 0.91 22.00 29.61 -169.99 -5.03 16.96 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.16 3.86 3.72 -5.19 -0.02 3.84 16 16 C 0.53 12.38 5.91 -10.99 -0.06 12.32 16 17 O -0.53 -14.27 15.55 5.56 0.09 -14.18 16 18 N -0.63 -11.79 2.97 -172.48 -0.51 -12.30 16 19 C 0.12 1.81 6.37 -3.49 -0.02 1.78 16 20 C -0.13 -1.57 5.38 -26.39 -0.14 -1.71 16 21 C -0.09 -1.04 2.68 -90.57 -0.24 -1.28 16 22 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 23 C -0.13 -1.63 5.36 -26.58 -0.14 -1.77 16 24 C 0.12 1.97 6.43 -3.69 -0.02 1.95 16 25 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.10 1.96 8.04 -51.93 -0.42 1.54 16 29 H 0.08 1.61 8.07 -51.93 -0.42 1.19 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.11 2.69 6.14 -51.93 -0.32 2.37 16 32 H 0.04 0.76 7.68 -51.93 -0.40 0.36 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.28 5.93 -51.93 -0.31 0.98 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.62 7.01 -51.93 -0.36 1.26 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -33.14 356.33 -7.05 -40.20 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.27 Total: 0.31 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 0.78 Total: 20.76 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.26 Total: -50.55 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.63 Total: -33.04 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.14 -7.05 -40.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.534 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds