Wall clock time and date at job start Tue Mar 31 2020 03:44:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46897 * 109.47328 * 2 1
4 4 C 1.46901 * 111.00095 * 163.80905 * 3 2 1
5 5 C 1.50697 * 109.47219 * 293.95458 * 4 3 2
6 6 H 1.08003 * 120.00099 * 0.02562 * 5 4 3
7 7 C 1.37877 * 119.99962 * 180.02562 * 5 4 3
8 8 N 1.31509 * 119.99880 * 359.97438 * 7 5 4
9 9 Si 1.86806 * 119.99970 * 180.02562 * 7 5 4
10 10 H 1.48493 * 109.47259 * 89.99703 * 9 7 5
11 11 H 1.48503 * 109.47094 * 209.99747 * 9 7 5
12 12 H 1.48498 * 109.47051 * 329.99684 * 9 7 5
13 13 C 1.46901 * 111.00191 * 287.76649 * 3 2 1
14 14 C 1.52993 * 109.47283 * 159.16140 * 13 3 2
15 15 H 1.08997 * 109.47421 * 55.13017 * 14 13 3
16 16 O 1.42900 * 109.47208 * 295.12379 * 14 13 3
17 17 C 1.53006 * 109.47186 * 175.12979 * 14 13 3
18 18 N 1.46498 * 109.46972 * 184.99991 * 17 14 13
19 19 C 1.34950 * 126.03538 * 124.71825 * 18 17 14
20 20 C 1.35315 * 107.74405 * 179.83881 * 19 18 17
21 21 N 1.48024 * 126.03739 * 180.16365 * 20 19 18
22 22 O 1.21801 * 119.99621 * 180.27800 * 21 20 19
23 23 O 1.21798 * 120.00246 * 0.27655 * 21 20 19
24 24 C 1.39864 * 107.91882 * 0.41475 * 20 19 18
25 25 N 1.30830 * 108.20617 * 359.74720 * 24 20 19
26 26 H 1.09000 * 109.46761 * 66.47748 * 1 2 3
27 27 H 1.09005 * 109.46618 * 186.47059 * 1 2 3
28 28 H 1.08994 * 109.47314 * 306.47107 * 1 2 3
29 29 H 1.09004 * 109.47373 * 239.99769 * 2 1 3
30 30 H 1.09004 * 109.47188 * 120.00319 * 2 1 3
31 31 H 1.08994 * 109.47353 * 53.95692 * 4 3 2
32 32 H 1.09002 * 109.46816 * 173.95599 * 4 3 2
33 33 H 0.97006 * 119.99655 * 180.02562 * 8 7 5
34 34 H 1.09000 * 109.46924 * 279.16230 * 13 3 2
35 35 H 1.09004 * 109.46624 * 39.15897 * 13 3 2
36 36 H 0.96699 * 114.00015 * 295.17702 * 16 14 13
37 37 H 1.09004 * 109.46538 * 304.99735 * 17 14 13
38 38 H 1.08995 * 109.47125 * 64.99358 * 17 14 13
39 39 H 1.08007 * 126.12500 * 359.97438 * 19 18 17
40 40 H 1.08001 * 125.89699 * 179.71835 * 24 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 3.4369 1.4422 0.3824
5 6 3.5879 1.0086 1.8177
6 1 2.7180 0.7190 2.3887
7 6 4.8364 0.9816 2.4021
8 7 5.8956 1.3338 1.7067
9 14 5.0236 0.4434 4.1811
10 1 5.2404 -1.0246 4.2339
11 1 6.1873 1.1378 4.7885
12 1 3.7919 0.7893 4.9351
13 6 1.8007 2.0208 -1.3060
14 6 1.8225 3.5419 -1.1428
15 1 2.7553 3.8428 -0.6659
16 8 0.7193 3.9497 -0.3312
17 6 1.7160 4.2040 -2.5180
18 7 1.8567 5.6550 -2.3735
19 6 2.7536 6.4335 -3.0145
20 6 2.5552 7.7096 -2.6106
21 7 3.3167 8.8950 -3.0645
22 8 3.0473 9.9976 -2.6226
23 8 4.2126 8.7679 -3.8797
24 6 1.5074 7.7098 -1.6842
25 7 1.0880 6.4788 -1.5412
26 1 -0.3633 0.4102 -0.9423
27 1 -0.3633 -1.0212 0.1158
28 1 -0.3633 0.6108 0.8263
29 1 1.8934 -0.5139 -0.8900
30 1 1.8934 -0.5139 0.8900
31 1 4.0139 0.7776 -0.2605
32 1 3.8023 2.4631 0.2709
33 1 6.7740 1.3145 2.1177
34 1 2.5896 1.7179 -1.9944
35 1 0.8337 1.7117 -1.7029
36 1 -0.1456 3.7803 -0.7292
37 1 2.5065 3.8250 -3.1658
38 1 0.7452 3.9750 -2.9574
39 1 3.4952 6.0982 -3.7245
40 1 1.1129 8.5764 -1.1744
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000081039283.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:44:34
Heat of formation + Delta-G solvation = 32.201690 kcal
Electronic energy + Delta-G solvation = -24094.130406 eV
Core-core repulsion = 20335.637031 eV
Total energy + Delta-G solvation = -3758.493375 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 298.147 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-42.49020 -41.41888 -38.34889 -36.49488 -36.11705 -33.75193 -32.72604 -31.41342
-30.85234 -29.57339 -27.52164 -26.00677 -24.86322 -22.67262 -22.37114 -21.73622
-21.32724 -20.01497 -19.18190 -18.48185 -17.57035 -16.96170 -16.70092 -16.36299
-15.81273 -15.49891 -14.79071 -14.64743 -14.39789 -14.12150 -13.89635 -13.65642
-13.05824 -12.60813 -12.47714 -12.16863 -11.91064 -11.66537 -11.55014 -11.31883
-11.17818 -11.13961 -11.09286 -10.98153 -10.78731 -10.62423 -10.36359 -10.28363
-9.96654 -9.84734 -9.54948 -9.24466 -8.52569 -7.38550 -6.11888 -4.12850
0.18878 1.12497 1.29882 2.04588 2.16272 3.26601 3.33691 3.38243
3.70074 4.05477 4.22832 4.28725 4.38645 4.55144 4.68660 4.79295
4.93446 5.07249 5.16281 5.23876 5.31648 5.59224 5.60968 5.72713
5.84939 5.94236 6.05393 6.08137 6.20836 6.37015 6.58037 6.65369
6.86422 7.10686 7.17054 7.68497 7.68743 7.84426 7.95001 8.06483
8.41644 8.94502 9.51993 10.99152
Molecular weight = 298.15amu
Principal moments of inertia in cm(-1)
A = 0.014789 B = 0.003566 C = 0.003096
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1892.867998 B = 7849.671157 C = 9042.029846
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.057 3.943
3 N -0.524 5.524
4 C 0.193 3.807
5 C -0.507 4.507
6 H 0.064 0.936
7 C 0.056 3.944
8 N -0.900 5.900
9 Si 0.897 3.103
10 H -0.281 1.281
11 H -0.286 1.286
12 H -0.272 1.272
13 C 0.027 3.973
14 C 0.106 3.894
15 H 0.110 0.890
16 O -0.521 6.521
17 C 0.089 3.911
18 N -0.335 5.335
19 C 0.149 3.851
20 C -0.196 4.196
21 N 0.073 4.927
22 O -0.168 6.168
23 O -0.180 6.180
24 C 0.102 3.898
25 N -0.236 5.236
26 H 0.040 0.960
27 H 0.048 0.952
28 H 0.062 0.938
29 H 0.016 0.984
30 H 0.088 0.912
31 H -0.010 1.010
32 H 0.027 0.973
33 H 0.262 0.738
34 H 0.035 0.965
35 H 0.068 0.932
36 H 0.363 0.637
37 H 0.115 0.885
38 H 0.102 0.898
39 H 0.203 0.797
40 H 0.208 0.792
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.263 5.461 -12.252 16.890
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.071 4.071
3 N -0.248 5.248
4 C 0.068 3.932
5 C -0.546 4.546
6 H 0.082 0.918
7 C -0.145 4.145
8 N -0.539 5.539
9 Si 0.725 3.275
10 H -0.207 1.207
11 H -0.212 1.212
12 H -0.197 1.197
13 C -0.104 4.104
14 C 0.044 3.956
15 H 0.128 0.872
16 O -0.323 6.323
17 C -0.032 4.032
18 N -0.113 5.113
19 C -0.005 4.005
20 C -0.294 4.294
21 N 0.588 4.412
22 O -0.382 6.382
23 O -0.391 6.391
24 C -0.088 4.088
25 N -0.055 5.055
26 H 0.059 0.941
27 H 0.067 0.933
28 H 0.082 0.918
29 H 0.035 0.965
30 H 0.106 0.894
31 H 0.007 0.993
32 H 0.045 0.955
33 H 0.071 0.929
34 H 0.053 0.947
35 H 0.087 0.913
36 H 0.208 0.792
37 H 0.134 0.866
38 H 0.120 0.880
39 H 0.220 0.780
40 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges -11.062 4.397 -10.680 15.992
hybrid contribution 1.242 -0.105 -0.669 1.415
sum -9.820 4.291 -11.349 15.609
Atomic orbital electron populations
1.21808 0.96532 1.00555 1.01225 1.21975 0.94150 0.89960 1.01036
1.62013 1.23098 1.15958 1.23725 1.19765 0.80679 0.96553 0.96186
1.21123 0.92919 1.44116 0.96415 0.91761 1.24979 0.95809 0.95481
0.98261 1.69940 0.98689 1.48480 1.36813 0.86498 0.77819 0.78510
0.84650 1.20703 1.21202 1.19680 1.22626 1.00563 0.93726 0.93437
1.22228 0.92991 0.93029 0.87309 0.87211 1.86814 1.15048 1.84734
1.45729 1.23090 1.05407 0.72494 1.02189 1.48876 1.24049 1.08411
1.29964 1.22401 0.93386 0.89228 0.95534 1.21043 1.07418 0.86794
1.14184 1.42468 0.99074 1.01271 0.98433 1.94539 1.72530 1.11525
1.59609 1.94540 1.23558 1.92600 1.28376 1.24042 0.92928 0.96906
0.94908 1.77989 1.16365 0.99368 1.11747 0.94128 0.93325 0.91842
0.96542 0.89410 0.99268 0.95453 0.92861 0.94674 0.91331 0.79169
0.86642 0.88018 0.78006 0.77572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.99 9.87 37.16 0.37 -1.62 16
2 C 0.06 1.00 5.52 -3.83 -0.02 0.98 16
3 N -0.52 -10.09 4.32 -236.07 -1.02 -11.11 16
4 C 0.19 4.70 4.54 -4.98 -0.02 4.68 16
5 C -0.51 -13.80 8.28 -34.44 -0.29 -14.09 16
6 H 0.06 1.75 7.26 -52.48 -0.38 1.37 16
7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16
8 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16
9 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16
10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
13 C 0.03 0.37 4.49 -3.83 -0.02 0.36 16
14 C 0.11 1.40 3.29 -26.73 -0.09 1.31 16
15 H 0.11 1.89 6.73 -51.93 -0.35 1.54 16
16 O -0.52 -7.61 12.33 -35.23 -0.43 -8.04 16
17 C 0.09 0.76 6.14 -4.04 -0.02 0.74 16
18 N -0.34 -3.53 3.68 -61.36 -0.23 -3.76 16
19 C 0.15 1.47 11.13 -17.22 -0.19 1.28 16
20 C -0.20 -2.33 7.11 -80.38 -0.57 -2.90 16
21 N 0.07 0.99 4.45 33.75 0.15 1.14 16
22 O -0.17 -2.42 19.05 -29.46 -0.56 -2.98 16
23 O -0.18 -2.56 19.02 -29.46 -0.56 -3.12 16
24 C 0.10 1.16 11.75 -17.37 -0.20 0.95 16
25 N -0.24 -2.92 11.56 30.62 0.35 -2.57 16
26 H 0.04 0.48 6.76 -51.93 -0.35 0.13 16
27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
29 H 0.02 0.28 8.05 -51.93 -0.42 -0.14 16
30 H 0.09 1.76 6.59 -51.93 -0.34 1.42 16
31 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16
32 H 0.03 0.72 6.64 -51.93 -0.34 0.37 16
33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16
34 H 0.04 0.48 7.98 -51.93 -0.41 0.07 16
35 H 0.07 0.79 6.34 -51.93 -0.33 0.46 16
36 H 0.36 3.85 9.03 45.56 0.41 4.26 16
37 H 0.12 0.69 8.07 -51.93 -0.42 0.27 16
38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16
39 H 0.20 1.31 8.06 -52.48 -0.42 0.89 16
40 H 0.21 1.79 8.06 -52.49 -0.42 1.37 16
LS Contribution 346.55 15.07 5.22 5.22
Total: -1.00 -33.43 346.55 -7.12 -40.55
By element:
Atomic # 1 Polarization: 5.13 SS G_CDS: -4.61 Total: 0.52 kcal
Atomic # 6 Polarization: -5.70 SS G_CDS: -1.16 Total: -6.86 kcal
Atomic # 7 Polarization: -41.65 SS G_CDS: 0.00 Total: -41.66 kcal
Atomic # 8 Polarization: -12.59 SS G_CDS: -1.56 Total: -14.14 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -33.43 -7.12 -40.55 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000081039283.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.754 kcal
(2) G-P(sol) polarization free energy of solvation -33.428 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.326 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.202 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds