Wall clock time and date at job start Tue Mar 31 2020 03:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47264 * 2 1 4 4 C 1.46902 * 111.00166 * 297.33546 * 3 2 1 5 5 C 1.50693 * 109.47163 * 292.71865 * 4 3 2 6 6 H 1.08005 * 120.00157 * 355.02506 * 5 4 3 7 7 C 1.37876 * 120.00221 * 175.02364 * 5 4 3 8 8 N 1.31506 * 119.99827 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00093 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47052 * 60.00067 * 9 7 5 11 11 H 1.48500 * 109.47380 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47440 * 300.00177 * 9 7 5 13 13 C 1.46907 * 110.99678 * 61.28458 * 3 2 1 14 14 C 1.53003 * 109.46680 * 66.04669 * 13 3 2 15 15 H 1.08993 * 109.47365 * 304.99751 * 14 13 3 16 16 O 1.42901 * 109.47097 * 65.00502 * 14 13 3 17 17 C 1.53007 * 109.46765 * 184.99741 * 14 13 3 18 18 N 1.46499 * 109.46611 * 175.00003 * 17 14 13 19 19 C 1.34953 * 126.03409 * 125.03408 * 18 17 14 20 20 C 1.35319 * 107.74377 * 179.97438 * 19 18 17 21 21 N 1.48023 * 126.03633 * 180.02562 * 20 19 18 22 22 O 1.21793 * 119.99994 * 179.97438 * 21 20 19 23 23 O 1.21798 * 120.00141 * 359.97438 * 21 20 19 24 24 C 1.39863 * 107.91992 * 359.97438 * 20 19 18 25 25 N 1.30839 * 108.20784 * 359.97438 * 24 20 19 26 26 H 1.08997 * 109.47235 * 59.43781 * 1 2 3 27 27 H 1.08999 * 109.47062 * 179.43844 * 1 2 3 28 28 H 1.08996 * 109.46860 * 299.43187 * 1 2 3 29 29 H 1.09001 * 109.46973 * 240.00790 * 2 1 3 30 30 H 1.08995 * 109.47452 * 120.00739 * 2 1 3 31 31 H 1.09002 * 109.47282 * 52.72184 * 4 3 2 32 32 H 1.09001 * 109.46966 * 172.71641 * 4 3 2 33 33 H 0.97002 * 120.00546 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47220 * 306.05246 * 13 3 2 35 35 H 1.08992 * 109.47193 * 186.04190 * 13 3 2 36 36 H 0.96700 * 114.00341 * 59.99516 * 16 14 13 37 37 H 1.08997 * 109.46764 * 55.00453 * 17 14 13 38 38 H 1.08994 * 109.47436 * 295.00346 * 17 14 13 39 39 H 1.08002 * 126.12860 * 359.95533 * 19 18 17 40 40 H 1.08011 * 125.89587 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6014 2.0913 -1.2183 5 6 2.3001 1.4919 -2.4114 6 1 3.0458 0.7233 -2.2707 7 6 1.9875 1.9245 -3.6826 8 7 1.0792 2.8600 -3.8540 9 14 2.8531 1.1810 -5.1615 10 1 2.5913 -0.2801 -5.2054 11 1 2.3409 1.8126 -6.4041 12 1 4.3147 1.4188 -5.0510 13 6 1.5739 2.1009 1.2028 14 6 2.2319 1.4821 2.4378 15 1 2.0206 0.4132 2.4649 16 8 3.6448 1.6871 2.3778 17 6 1.6736 2.1446 3.6990 18 7 2.2134 1.4722 4.8834 19 6 2.8722 2.0646 5.9014 20 6 3.2025 1.1027 6.7940 21 7 3.9347 1.3077 8.0641 22 8 4.1744 0.3587 8.7888 23 8 4.2974 2.4255 8.3844 24 6 2.7290 -0.1191 6.3050 25 7 2.1351 0.1012 5.1602 26 1 -0.3633 0.5225 -0.8849 27 1 -0.3633 -1.0276 -0.0101 28 1 -0.3633 0.5050 0.8950 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.5228 1.9944 -1.3423 32 1 1.8643 3.1459 -1.1352 33 1 0.8595 3.1647 -4.7483 34 1 0.4903 2.0233 1.2912 35 1 1.8581 3.1504 1.1272 36 1 3.9066 2.6176 2.3511 37 1 0.5865 2.0654 3.7001 38 1 1.9614 3.1957 3.7151 39 1 3.0959 3.1176 5.9880 40 1 2.8352 -1.0789 6.7890 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:36 Heat of formation + Delta-G solvation = 34.249757 kcal Electronic energy + Delta-G solvation = -23975.662893 eV Core-core repulsion = 20217.258329 eV Total energy + Delta-G solvation = -3758.404564 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.62535 -41.55064 -38.64350 -36.61448 -36.35369 -33.90370 -32.71027 -31.58953 -30.54015 -29.45851 -27.61136 -26.04975 -24.89754 -23.62082 -22.37546 -21.89912 -21.34869 -19.63240 -19.22614 -18.59679 -17.69005 -17.12674 -16.49703 -16.35763 -16.22400 -15.49521 -15.15143 -14.79390 -14.70513 -14.10232 -13.93031 -13.79393 -12.99206 -12.78520 -12.48934 -12.01320 -11.95757 -11.67441 -11.65165 -11.50634 -11.26460 -11.25611 -11.17733 -10.90273 -10.89844 -10.67498 -10.45109 -10.24180 -10.15422 -9.89002 -9.64820 -9.27558 -8.51819 -7.33097 -6.11778 -4.12934 0.07191 0.99874 1.14797 1.90114 2.01781 3.27958 3.32177 3.35432 3.59701 3.91398 4.09958 4.14140 4.36726 4.41859 4.55870 4.67617 4.83619 5.00584 5.07886 5.24124 5.26356 5.46837 5.60376 5.73998 5.84887 5.91399 5.97674 6.05211 6.24825 6.27999 6.55592 6.68956 6.77082 7.13429 7.28028 7.56305 7.58153 7.70665 7.95533 8.04924 8.42201 8.95072 9.51835 10.98808 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.034848 B = 0.002659 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.288172 B =10528.506039 C =10666.494526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 N -0.523 5.523 4 C 0.190 3.810 5 C -0.507 4.507 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.022 3.978 14 C 0.100 3.900 15 H 0.115 0.885 16 O -0.539 6.539 17 C 0.089 3.911 18 N -0.330 5.330 19 C 0.155 3.845 20 C -0.198 4.198 21 N 0.072 4.928 22 O -0.168 6.168 23 O -0.180 6.180 24 C 0.111 3.889 25 N -0.259 5.259 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.003 0.997 32 H 0.023 0.977 33 H 0.262 0.738 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.370 0.630 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.203 0.797 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 -0.507 18.375 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.070 4.070 3 N -0.246 5.246 4 C 0.065 3.935 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.108 4.108 14 C 0.039 3.961 15 H 0.133 0.867 16 O -0.342 6.342 17 C -0.032 4.032 18 N -0.107 5.107 19 C 0.000 4.000 20 C -0.296 4.296 21 N 0.588 4.412 22 O -0.382 6.382 23 O -0.390 6.390 24 C -0.079 4.079 25 N -0.078 5.078 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.021 0.979 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.217 0.783 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.220 0.780 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.435 -1.596 16.488 16.627 hybrid contribution -0.016 0.819 0.064 0.822 sum -1.452 -0.777 16.552 16.634 Atomic orbital electron populations 1.22401 0.99421 1.01256 1.01778 1.22022 0.91917 0.91394 1.01701 1.62279 1.58842 1.01746 1.01732 1.19797 0.94851 0.93579 0.85252 1.21090 1.21796 1.21603 0.90034 0.91904 1.24969 0.95264 0.95220 0.99065 1.69930 1.32155 1.29316 1.22570 0.86564 0.79984 0.79308 0.81602 1.20256 1.21363 1.20128 1.22672 0.97506 0.98769 0.91823 1.22355 0.82049 1.01843 0.89840 0.86692 1.86707 1.20528 1.30575 1.96438 1.23095 1.00947 0.96818 0.82318 1.48824 1.39850 1.05817 1.16209 1.22353 0.91035 1.00109 0.86504 1.21020 1.18727 0.96691 0.93150 1.42458 0.97943 1.00276 1.00558 1.94544 1.60221 1.34144 1.49248 1.94542 1.55700 1.10645 1.78126 1.23969 0.93752 0.98365 0.91782 1.77784 1.22655 0.92086 1.15298 0.91184 0.93190 0.93949 0.89786 0.92885 0.97886 0.95867 0.92841 0.94161 0.90778 0.78298 0.87318 0.86944 0.77987 0.77479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 9.26 37.16 0.34 -2.76 16 2 C 0.06 1.04 5.68 -3.83 -0.02 1.02 16 3 N -0.52 -10.02 4.64 -236.08 -1.10 -11.12 16 4 C 0.19 4.53 4.54 -4.98 -0.02 4.51 16 5 C -0.51 -13.58 8.39 -34.44 -0.29 -13.86 16 6 H 0.06 1.70 7.39 -52.48 -0.39 1.31 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.66 13.28 55.43 0.74 -24.93 16 9 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.02 0.31 4.37 -3.82 -0.02 0.29 16 14 C 0.10 1.14 3.04 -26.73 -0.08 1.06 16 15 H 0.12 1.56 6.22 -51.93 -0.32 1.23 16 16 O -0.54 -7.00 13.23 -35.23 -0.47 -7.47 16 17 C 0.09 0.66 6.15 -4.04 -0.02 0.63 16 18 N -0.33 -2.97 3.63 -61.36 -0.22 -3.20 16 19 C 0.16 1.26 11.13 -17.22 -0.19 1.07 16 20 C -0.20 -2.02 7.11 -80.38 -0.57 -2.59 16 21 N 0.07 0.88 4.45 33.75 0.15 1.03 16 22 O -0.17 -2.17 19.05 -29.46 -0.56 -2.73 16 23 O -0.18 -2.27 19.02 -29.46 -0.56 -2.83 16 24 C 0.11 1.08 11.75 -17.37 -0.20 0.88 16 25 N -0.26 -2.83 12.34 30.63 0.38 -2.46 16 26 H 0.07 1.35 6.29 -51.93 -0.33 1.02 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.60 6.33 -51.93 -0.33 0.28 16 29 H 0.08 1.71 6.98 -51.93 -0.36 1.34 16 30 H 0.05 0.87 6.31 -51.93 -0.33 0.54 16 31 H 0.00 0.09 6.02 -51.93 -0.31 -0.23 16 32 H 0.02 0.59 7.91 -51.93 -0.41 0.18 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.04 0.54 6.05 -51.93 -0.31 0.23 16 35 H 0.07 0.98 7.91 -51.93 -0.41 0.56 16 36 H 0.37 3.47 9.05 45.56 0.41 3.88 16 37 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 0.47 8.07 -51.93 -0.42 0.05 16 39 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.21 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 342.63 15.07 5.16 5.16 Total: -1.00 -32.83 342.63 -7.01 -39.85 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.34 Total: 0.92 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -1.18 Total: -8.32 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.05 Total: -40.66 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -1.59 Total: -13.04 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.83 -7.01 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.098 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds