Wall clock time and date at job start Tue Mar 31 2020 03:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47264 * 2 1 4 4 C 1.46902 * 111.00166 * 297.33546 * 3 2 1 5 5 C 1.50693 * 109.47163 * 292.71865 * 4 3 2 6 6 H 1.08005 * 120.00157 * 355.02506 * 5 4 3 7 7 C 1.37876 * 120.00221 * 175.02364 * 5 4 3 8 8 N 1.31506 * 119.99827 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00093 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47052 * 60.00067 * 9 7 5 11 11 H 1.48500 * 109.47380 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47440 * 300.00177 * 9 7 5 13 13 C 1.46907 * 110.99678 * 61.28458 * 3 2 1 14 14 C 1.53003 * 109.46680 * 66.04669 * 13 3 2 15 15 H 1.08993 * 109.47365 * 304.99751 * 14 13 3 16 16 O 1.42901 * 109.47097 * 65.00502 * 14 13 3 17 17 C 1.53007 * 109.46765 * 184.99741 * 14 13 3 18 18 N 1.46499 * 109.46611 * 175.00003 * 17 14 13 19 19 C 1.34953 * 126.03409 * 125.03408 * 18 17 14 20 20 C 1.35319 * 107.74377 * 179.97438 * 19 18 17 21 21 N 1.48023 * 126.03633 * 180.02562 * 20 19 18 22 22 O 1.21793 * 119.99994 * 179.97438 * 21 20 19 23 23 O 1.21798 * 120.00141 * 359.97438 * 21 20 19 24 24 C 1.39863 * 107.91992 * 359.97438 * 20 19 18 25 25 N 1.30839 * 108.20784 * 359.97438 * 24 20 19 26 26 H 1.08997 * 109.47235 * 59.43781 * 1 2 3 27 27 H 1.08999 * 109.47062 * 179.43844 * 1 2 3 28 28 H 1.08996 * 109.46860 * 299.43187 * 1 2 3 29 29 H 1.09001 * 109.46973 * 240.00790 * 2 1 3 30 30 H 1.08995 * 109.47452 * 120.00739 * 2 1 3 31 31 H 1.09002 * 109.47282 * 52.72184 * 4 3 2 32 32 H 1.09001 * 109.46966 * 172.71641 * 4 3 2 33 33 H 0.97002 * 120.00546 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47220 * 306.05246 * 13 3 2 35 35 H 1.08992 * 109.47193 * 186.04190 * 13 3 2 36 36 H 0.96700 * 114.00341 * 59.99516 * 16 14 13 37 37 H 1.08997 * 109.46764 * 55.00453 * 17 14 13 38 38 H 1.08994 * 109.47436 * 295.00346 * 17 14 13 39 39 H 1.08002 * 126.12860 * 359.95533 * 19 18 17 40 40 H 1.08011 * 125.89587 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6014 2.0913 -1.2183 5 6 2.3001 1.4919 -2.4114 6 1 3.0458 0.7233 -2.2707 7 6 1.9875 1.9245 -3.6826 8 7 1.0792 2.8600 -3.8540 9 14 2.8531 1.1810 -5.1615 10 1 2.5913 -0.2801 -5.2054 11 1 2.3409 1.8126 -6.4041 12 1 4.3147 1.4188 -5.0510 13 6 1.5739 2.1009 1.2028 14 6 2.2319 1.4821 2.4378 15 1 2.0206 0.4132 2.4649 16 8 3.6448 1.6871 2.3778 17 6 1.6736 2.1446 3.6990 18 7 2.2134 1.4722 4.8834 19 6 2.8722 2.0646 5.9014 20 6 3.2025 1.1027 6.7940 21 7 3.9347 1.3077 8.0641 22 8 4.1744 0.3587 8.7888 23 8 4.2974 2.4255 8.3844 24 6 2.7290 -0.1191 6.3050 25 7 2.1351 0.1012 5.1602 26 1 -0.3633 0.5225 -0.8849 27 1 -0.3633 -1.0276 -0.0101 28 1 -0.3633 0.5050 0.8950 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.5228 1.9944 -1.3423 32 1 1.8643 3.1459 -1.1352 33 1 0.8595 3.1647 -4.7483 34 1 0.4903 2.0233 1.2912 35 1 1.8581 3.1504 1.1272 36 1 3.9066 2.6176 2.3511 37 1 0.5865 2.0654 3.7001 38 1 1.9614 3.1957 3.7151 39 1 3.0959 3.1176 5.9880 40 1 2.8352 -1.0789 6.7890 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:36 Heat of formation + Delta-G solvation = 9.449596 kcal Electronic energy + Delta-G solvation = -23976.738309 eV Core-core repulsion = 20217.258329 eV Total energy + Delta-G solvation = -3759.479980 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.40264 -42.35510 -39.81060 -37.61310 -37.51528 -34.73807 -34.63726 -32.32952 -31.59521 -30.94548 -28.97032 -27.18440 -25.99974 -25.15358 -23.58842 -22.63927 -22.20561 -20.97510 -20.08536 -19.47767 -18.55088 -18.41026 -17.87343 -17.41042 -17.14972 -16.66741 -16.46246 -16.26231 -15.60100 -15.41355 -14.97635 -14.59954 -14.45676 -14.05934 -13.58195 -13.47330 -13.14161 -12.86946 -12.79391 -12.72215 -12.68254 -12.56576 -12.50902 -12.20946 -12.13947 -12.00572 -11.89822 -11.54101 -11.43071 -11.20924 -10.92285 -10.59642 -10.40106 -8.87154 -8.20153 -6.28280 -0.78171 0.24602 0.43417 1.21120 1.25804 1.39974 1.41142 1.49201 2.39134 2.87245 3.12814 3.21396 3.34071 3.45197 3.68308 3.79538 3.84043 4.00877 4.09921 4.24535 4.28968 4.34955 4.48446 4.54409 4.71719 4.74450 4.92548 4.96538 5.03781 5.21611 5.26781 5.36574 5.42513 5.49552 5.67103 5.98430 6.09152 6.34249 6.62217 6.66887 6.85314 6.88959 7.41063 8.89419 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.034848 B = 0.002659 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.288172 B =10528.506039 C =10666.494526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 N -0.536 5.536 4 C 0.206 3.794 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.958 3.042 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.022 3.978 14 C 0.112 3.888 15 H 0.093 0.907 16 O -0.563 6.563 17 C 0.093 3.907 18 N -0.330 5.330 19 C 0.177 3.823 20 C -0.218 4.218 21 N 0.076 4.924 22 O -0.199 6.199 23 O -0.187 6.187 24 C 0.112 3.888 25 N -0.289 5.289 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.073 0.927 31 H -0.017 1.017 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.386 0.614 37 H 0.126 0.874 38 H 0.155 0.845 39 H 0.241 0.759 40 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 0.001 19.144 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.068 4.068 3 N -0.259 5.259 4 C 0.080 3.920 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.784 3.216 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.196 1.196 13 C -0.107 4.107 14 C 0.052 3.948 15 H 0.111 0.889 16 O -0.369 6.369 17 C -0.026 4.026 18 N -0.107 5.107 19 C 0.020 3.980 20 C -0.316 4.316 21 N 0.586 4.414 22 O -0.406 6.406 23 O -0.398 6.398 24 C -0.078 4.078 25 N -0.109 5.109 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.001 0.999 32 H 0.021 0.979 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.235 0.765 37 H 0.144 0.856 38 H 0.172 0.828 39 H 0.257 0.743 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.500 -1.123 17.301 17.402 hybrid contribution -0.001 0.686 -0.171 0.707 sum -1.500 -0.437 17.130 17.201 Atomic orbital electron populations 1.22275 0.98063 1.02245 1.01191 1.21958 0.93016 0.90716 1.01100 1.62113 1.59603 1.02277 1.01953 1.19408 0.93159 0.92607 0.86829 1.21417 1.21632 1.21286 0.91550 0.92810 1.25752 0.95946 0.95629 1.01824 1.70033 1.33456 1.30544 1.23166 0.85603 0.78970 0.78693 0.78369 1.19667 1.20832 1.19645 1.22777 0.98398 0.98953 0.90614 1.22073 0.81416 1.00778 0.90557 0.88871 1.86667 1.21378 1.32300 1.96578 1.23160 1.01656 0.98162 0.79659 1.48909 1.39761 1.05336 1.16653 1.22935 0.88663 1.01297 0.85059 1.21177 1.19867 0.97756 0.92832 1.42667 0.97761 0.99945 1.01031 1.94540 1.61511 1.34258 1.50304 1.94518 1.55956 1.10743 1.78554 1.24310 0.92883 0.99141 0.91427 1.77765 1.23681 0.93555 1.15853 0.94634 0.91384 0.91541 0.92959 0.90838 0.99932 0.97875 0.92775 0.93098 0.89815 0.76501 0.85634 0.82774 0.74257 0.75999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.71 9.26 71.98 0.67 -5.04 16 2 C 0.06 2.15 5.68 86.30 0.49 2.64 16 3 N -0.54 -20.39 4.64 -900.81 -4.18 -24.57 16 4 C 0.21 10.01 4.54 85.55 0.39 10.40 16 5 C -0.52 -28.41 8.39 25.60 0.21 -28.20 16 6 H 0.05 2.97 7.39 -2.91 -0.02 2.95 16 7 C 0.01 0.37 5.46 84.66 0.46 0.83 16 8 N -0.93 -53.86 13.28 21.45 0.28 -53.57 16 9 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.02 0.56 4.37 86.30 0.38 0.94 16 14 C 0.11 2.27 3.04 30.60 0.09 2.36 16 15 H 0.09 2.33 6.22 -2.39 -0.01 2.32 16 16 O -0.56 -13.32 13.23 -148.98 -1.97 -15.29 16 17 C 0.09 1.00 6.15 86.38 0.53 1.53 16 18 N -0.33 -4.84 3.63 -348.05 -1.26 -6.11 16 19 C 0.18 2.25 11.13 83.54 0.93 3.17 16 20 C -0.22 -4.02 7.11 36.09 0.26 -3.76 16 21 N 0.08 1.76 4.45 -47.13 -0.21 1.55 16 22 O -0.20 -5.12 19.05 18.90 0.36 -4.76 16 23 O -0.19 -4.48 19.02 18.89 0.36 -4.12 16 24 C 0.11 2.01 11.75 85.23 1.00 3.01 16 25 N -0.29 -5.74 12.34 -57.02 -0.70 -6.44 16 26 H 0.03 1.37 6.29 -2.39 -0.02 1.36 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.77 6.33 -2.39 -0.02 1.75 16 29 H 0.05 2.17 6.98 -2.39 -0.02 2.15 16 30 H 0.07 2.32 6.31 -2.39 -0.02 2.31 16 31 H -0.02 -0.88 6.02 -2.39 -0.01 -0.90 16 32 H 0.00 0.17 7.91 -2.39 -0.02 0.15 16 33 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.05 1.23 6.05 -2.39 -0.01 1.22 16 35 H 0.08 2.01 7.91 -2.39 -0.02 1.99 16 36 H 0.39 6.13 9.05 -74.06 -0.67 5.46 16 37 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.15 0.42 8.07 -2.39 -0.02 0.40 16 39 H 0.24 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.22 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -73.20 342.63 0.52 -72.67 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.41 Total: 7.19 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 5.41 Total: -12.10 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -6.07 Total: -89.14 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -1.25 Total: -24.17 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -73.20 0.52 -72.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.124 kcal (2) G-P(sol) polarization free energy of solvation -73.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds