Wall clock time and date at job start Tue Mar 31 2020 03:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21558 * 120.00318 * 0.02562 * 14 13 3 16 16 C 1.47770 * 120.00008 * 180.02562 * 14 13 3 17 17 C 1.40629 * 119.80270 * 359.72466 * 16 14 13 18 18 C 1.35701 * 120.92185 * 179.72781 * 17 16 14 19 19 C 1.40765 * 120.10980 * 0.53109 * 18 17 16 20 20 N 1.33645 * 120.83015 * 179.78416 * 19 18 17 21 21 C 1.31127 * 121.39462 * 179.97438 * 20 19 18 22 22 C 1.50698 * 119.11564 * 179.97438 * 21 20 19 23 23 C 1.39313 * 121.76405 * 359.96711 * 21 20 19 24 24 C 1.36575 * 119.91194 * 0.07360 * 23 21 20 25 25 C 1.40899 * 118.15462 * 359.91198 * 24 23 21 26 26 C 1.38544 * 119.80565 * 180.02562 * 16 14 13 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.08003 * 119.54542 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.95156 * 180.28019 * 18 17 16 36 36 H 1.09003 * 109.46564 * 89.99528 * 22 21 20 37 37 H 1.08995 * 109.47290 * 209.99119 * 22 21 20 38 38 H 1.08994 * 109.47367 * 329.99935 * 22 21 20 39 39 H 1.08002 * 120.04325 * 180.02562 * 23 21 20 40 40 H 1.07993 * 120.92502 * 179.97438 * 24 23 21 41 41 H 1.08003 * 120.30004 * 359.97263 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3410 2.6326 -0.4319 16 6 0.0441 3.3246 -2.6297 17 6 0.9475 3.3641 -3.7067 18 6 0.6100 3.9596 -4.8784 19 6 -0.6547 4.5596 -5.0271 20 7 -1.0005 5.1537 -6.1732 21 6 -2.1757 5.7155 -6.3239 22 6 -2.5116 6.3717 -7.6383 23 6 -3.1220 5.7219 -5.3016 24 6 -2.8342 5.1331 -4.1034 25 6 -1.5705 4.5303 -3.9454 26 6 -1.2080 3.9066 -2.7434 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 2.2720 2.1232 -1.9977 34 1 1.9217 2.9100 -3.6016 35 1 1.3143 3.9769 -5.6970 36 1 -2.9732 5.6404 -8.3019 37 1 -3.2048 7.1951 -7.4667 38 1 -1.5998 6.7539 -8.0971 39 1 -4.0818 6.1925 -5.4562 40 1 -3.5554 5.1289 -3.2996 41 1 -1.8990 3.8793 -1.9138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097140568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:31 Heat of formation + Delta-G solvation = 5.441852 kcal Electronic energy + Delta-G solvation = -23081.918901 eV Core-core repulsion = 19733.114395 eV Total energy + Delta-G solvation = -3348.804506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.98943 -39.22465 -36.96269 -35.09393 -33.66939 -32.65481 -32.02657 -30.83284 -30.10929 -28.25932 -26.83565 -23.97384 -23.71604 -22.73540 -22.09509 -20.64936 -19.54537 -18.21356 -17.90439 -16.50979 -16.33475 -15.45559 -15.31874 -14.95073 -14.56810 -14.48724 -14.36908 -13.86521 -13.56259 -13.34141 -13.21143 -13.08616 -12.69235 -12.47441 -12.19455 -12.03389 -11.61423 -11.44091 -11.26123 -11.19150 -11.01060 -10.83177 -10.70445 -10.34997 -10.19925 -9.65226 -9.65027 -9.17309 -9.07125 -8.80115 -8.51802 -8.30423 -7.85233 -6.14063 -4.23804 0.19511 0.60075 1.85933 2.50882 3.24781 3.30260 3.31247 3.65656 3.93434 4.00311 4.16401 4.34561 4.41237 4.52679 4.65074 4.89779 5.00804 5.11627 5.17239 5.19853 5.28808 5.30612 5.31967 5.63461 5.72778 5.79904 5.90059 5.96952 6.23098 6.33998 6.38069 6.40415 6.44745 6.64518 6.69764 7.03070 7.17820 7.33432 7.40070 7.59597 7.70458 7.77170 7.87484 8.15562 8.60545 8.74121 9.05348 9.43348 10.91257 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.028683 B = 0.003143 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.943687 B = 8905.898308 C = 9555.569898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.541 3.459 15 O -0.544 6.544 16 C -0.121 4.121 17 C -0.070 4.070 18 C -0.104 4.104 19 C 0.144 3.856 20 N -0.480 5.480 21 C 0.159 3.841 22 C -0.106 4.106 23 C -0.181 4.181 24 C -0.044 4.044 25 C -0.116 4.116 26 C -0.035 4.035 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.100 0.900 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 9.054 -16.063 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.424 6.424 16 C -0.125 4.125 17 C -0.091 4.091 18 C -0.123 4.123 19 C 0.023 3.977 20 N -0.189 5.189 21 C 0.006 3.994 22 C -0.163 4.163 23 C -0.201 4.201 24 C -0.070 4.070 25 C -0.118 4.118 26 C -0.055 4.055 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.118 0.882 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.222 0.778 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.520 8.852 -15.796 20.942 hybrid contribution 0.709 -0.085 0.469 0.854 sum -9.811 8.768 -15.327 20.200 Atomic orbital electron populations 1.21847 0.98350 0.98107 1.01223 1.21938 0.92627 0.99698 1.02379 1.18833 0.94297 0.89233 0.80773 0.93113 1.21183 0.90616 1.39245 1.06401 0.92102 1.24879 0.98635 0.94742 0.95346 1.69881 1.35259 1.37466 1.09305 0.86509 0.84801 0.78338 0.77477 1.20161 1.21121 1.20135 1.46476 1.14272 1.55262 1.18670 1.18076 0.83144 0.79473 0.86665 1.90743 1.51537 1.60211 1.39862 1.20360 0.95224 1.01366 0.95509 1.21089 0.99333 0.96718 0.91934 1.20639 0.94822 0.98558 0.98249 1.18929 0.94351 0.95685 0.88784 1.67870 1.18199 1.09726 1.23107 1.21515 0.89001 0.92959 0.95948 1.20778 1.02829 1.00089 0.92649 1.21673 1.01155 1.03047 0.94221 1.21561 0.94882 0.92975 0.97538 1.18814 0.95635 1.01837 0.95553 1.21439 0.95599 0.92616 0.95801 0.94325 0.93100 0.95794 0.88189 0.94964 0.92464 0.77842 0.84591 0.84370 0.90158 0.90543 0.90302 0.84548 0.84052 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.08 5.45 -26.74 -0.15 -3.22 16 3 C 0.27 6.71 2.24 -69.09 -0.15 6.55 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.95 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.46 11.29 55.43 0.63 -23.83 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 13 N -0.70 -14.36 4.97 -55.91 -0.28 -14.64 16 14 C 0.54 10.79 6.33 -12.36 -0.08 10.71 16 15 O -0.54 -12.48 13.44 5.31 0.07 -12.41 16 16 C -0.12 -1.95 5.87 -104.99 -0.62 -2.57 16 17 C -0.07 -0.96 9.44 -39.59 -0.37 -1.34 16 18 C -0.10 -1.35 9.95 -39.54 -0.39 -1.74 16 19 C 0.14 1.99 6.61 -84.78 -0.56 1.43 16 20 N -0.48 -6.28 10.23 -7.16 -0.07 -6.35 16 21 C 0.16 1.65 6.78 -82.49 -0.56 1.09 16 22 C -0.11 -0.71 10.14 36.00 0.37 -0.35 16 23 C -0.18 -1.65 9.64 -39.78 -0.38 -2.04 16 24 C -0.04 -0.46 9.89 -39.18 -0.39 -0.85 16 25 C -0.12 -1.55 5.74 -106.81 -0.61 -2.16 16 26 C -0.03 -0.51 9.35 -38.74 -0.36 -0.87 16 27 H 0.04 0.84 5.65 -51.93 -0.29 0.54 16 28 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 33 H 0.39 6.89 6.53 -40.82 -0.27 6.62 16 34 H 0.14 1.62 6.35 -52.48 -0.33 1.29 16 35 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.14 2.05 7.62 -52.48 -0.40 1.65 16 LS Contribution 339.11 15.07 5.11 5.11 Total: -1.00 -31.07 339.11 -9.23 -40.30 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.32 Total: 7.09 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -4.34 Total: -10.66 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.27 Total: -44.82 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.41 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.07 -9.23 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.738 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds