Wall clock time and date at job start Tue Mar 31 2020 03:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21558 * 120.00318 * 0.02562 * 14 13 3 16 16 C 1.47770 * 120.00008 * 180.02562 * 14 13 3 17 17 C 1.40629 * 119.80270 * 359.72466 * 16 14 13 18 18 C 1.35701 * 120.92185 * 179.72781 * 17 16 14 19 19 C 1.40765 * 120.10980 * 0.53109 * 18 17 16 20 20 N 1.33645 * 120.83015 * 179.78416 * 19 18 17 21 21 C 1.31127 * 121.39462 * 179.97438 * 20 19 18 22 22 C 1.50698 * 119.11564 * 179.97438 * 21 20 19 23 23 C 1.39313 * 121.76405 * 359.96711 * 21 20 19 24 24 C 1.36575 * 119.91194 * 0.07360 * 23 21 20 25 25 C 1.40899 * 118.15462 * 359.91198 * 24 23 21 26 26 C 1.38544 * 119.80565 * 180.02562 * 16 14 13 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.08003 * 119.54542 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.95156 * 180.28019 * 18 17 16 36 36 H 1.09003 * 109.46564 * 89.99528 * 22 21 20 37 37 H 1.08995 * 109.47290 * 209.99119 * 22 21 20 38 38 H 1.08994 * 109.47367 * 329.99935 * 22 21 20 39 39 H 1.08002 * 120.04325 * 180.02562 * 23 21 20 40 40 H 1.07993 * 120.92502 * 179.97438 * 24 23 21 41 41 H 1.08003 * 120.30004 * 359.97263 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3410 2.6326 -0.4319 16 6 0.0441 3.3246 -2.6297 17 6 0.9475 3.3641 -3.7067 18 6 0.6100 3.9596 -4.8784 19 6 -0.6547 4.5596 -5.0271 20 7 -1.0005 5.1537 -6.1732 21 6 -2.1757 5.7155 -6.3239 22 6 -2.5116 6.3717 -7.6383 23 6 -3.1220 5.7219 -5.3016 24 6 -2.8342 5.1331 -4.1034 25 6 -1.5705 4.5303 -3.9454 26 6 -1.2080 3.9066 -2.7434 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 2.2720 2.1232 -1.9977 34 1 1.9217 2.9100 -3.6016 35 1 1.3143 3.9769 -5.6970 36 1 -2.9732 5.6404 -8.3019 37 1 -3.2048 7.1951 -7.4667 38 1 -1.5998 6.7539 -8.0971 39 1 -4.0818 6.1925 -5.4562 40 1 -3.5554 5.1289 -3.2996 41 1 -1.8990 3.8793 -1.9138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097140568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:30 Heat of formation + Delta-G solvation = -13.232173 kcal Electronic energy + Delta-G solvation = -23082.728668 eV Core-core repulsion = 19733.114395 eV Total energy + Delta-G solvation = -3349.614272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96783 -40.72137 -38.08084 -36.91434 -34.63934 -34.30992 -33.34290 -32.41457 -31.10030 -29.46496 -28.45636 -25.31744 -24.90190 -24.16363 -23.06539 -22.14133 -21.32237 -19.64213 -18.96899 -18.03134 -17.54005 -16.99627 -16.69152 -16.31295 -16.12156 -15.67544 -15.43518 -15.03381 -14.82955 -14.58615 -14.42009 -14.13383 -13.90696 -13.72064 -13.48950 -13.19966 -13.05269 -12.98231 -12.92007 -12.66122 -12.44304 -12.22796 -12.18798 -12.06334 -11.60964 -11.59097 -11.07441 -10.82963 -10.53325 -10.51376 -9.80486 -9.63895 -9.28713 -8.16288 -6.33754 -0.78902 -0.34600 0.87657 1.44559 1.45834 1.47063 1.54678 2.32471 2.38413 2.55983 3.06306 3.13390 3.16311 3.55495 3.67267 3.78042 3.88717 3.99801 4.07256 4.27025 4.40690 4.48733 4.56179 4.68812 4.74040 4.82551 4.83790 4.88178 4.95422 5.02297 5.06352 5.20306 5.21595 5.23623 5.30726 5.42564 5.51718 5.54535 5.59875 5.75615 5.79362 5.91179 6.15528 6.72959 6.89878 6.92212 7.31498 7.49853 8.89009 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.028683 B = 0.003143 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.943687 B = 8905.898308 C = 9555.569898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.550 4.550 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.697 5.697 14 C 0.542 3.458 15 O -0.582 6.582 16 C -0.145 4.145 17 C -0.072 4.072 18 C -0.103 4.103 19 C 0.130 3.870 20 N -0.507 5.507 21 C 0.158 3.842 22 C -0.105 4.105 23 C -0.170 4.170 24 C -0.050 4.050 25 C -0.133 4.133 26 C -0.030 4.030 27 H 0.041 0.959 28 H 0.027 0.973 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.402 0.598 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.178 0.822 40 H 0.166 0.834 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.383 10.305 -18.818 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.589 4.589 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.346 5.346 14 C 0.330 3.670 15 O -0.465 6.465 16 C -0.148 4.148 17 C -0.093 4.093 18 C -0.121 4.121 19 C 0.009 3.991 20 N -0.218 5.218 21 C 0.005 3.995 22 C -0.162 4.162 23 C -0.190 4.190 24 C -0.075 4.075 25 C -0.136 4.136 26 C -0.050 4.050 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.238 0.762 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.195 0.805 40 H 0.183 0.817 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.185 10.116 -18.597 23.944 hybrid contribution 0.728 -0.333 1.190 1.434 sum -10.457 9.784 -17.407 22.540 Atomic orbital electron populations 1.21684 0.97023 0.99203 1.00227 1.21790 0.93737 0.99054 1.01420 1.18422 0.93782 0.89228 0.81063 0.98099 1.21540 0.91310 1.39151 1.06850 0.91005 1.25755 1.03300 0.94311 0.94973 1.70037 1.37147 1.38233 1.09813 0.85434 0.79102 0.78438 0.77590 1.19709 1.21173 1.18883 1.46213 1.15139 1.55442 1.17799 1.18619 0.82214 0.78605 0.87606 1.90712 1.52481 1.61610 1.41654 1.20029 0.96778 1.03589 0.94429 1.21109 0.99433 0.97194 0.91519 1.20834 0.95135 0.97876 0.98277 1.19192 0.94741 0.95826 0.89357 1.67950 1.19887 1.11119 1.22805 1.22311 0.88261 0.91234 0.97677 1.20920 1.03440 1.01014 0.90824 1.22133 1.02348 1.01578 0.92904 1.21918 0.94120 0.92416 0.99055 1.18965 0.97153 1.02617 0.94824 1.21493 0.94962 0.92118 0.96403 0.94029 0.95335 0.93495 0.90774 0.94030 0.92542 0.76154 0.83325 0.82594 0.88748 0.87692 0.90703 0.80466 0.81659 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.06 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.37 2.24 44.24 0.10 14.47 16 4 H 0.00 0.07 7.58 -2.39 -0.02 0.05 16 5 C -0.55 -29.14 8.73 25.60 0.22 -28.91 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.91 5.29 84.65 0.45 1.36 16 8 N -0.91 -52.25 11.29 21.45 0.24 -52.00 16 9 Si 0.97 42.02 29.54 68.60 2.03 44.04 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.70 -29.49 4.97 -449.07 -2.23 -31.72 16 14 C 0.54 22.42 6.33 86.76 0.55 22.97 16 15 O -0.58 -28.13 13.44 -3.90 -0.05 -28.18 16 16 C -0.15 -4.76 5.87 -20.10 -0.12 -4.88 16 17 C -0.07 -1.96 9.44 22.27 0.21 -1.75 16 18 C -0.10 -2.58 9.95 22.30 0.22 -2.36 16 19 C 0.13 3.46 6.61 40.36 0.27 3.72 16 20 N -0.51 -12.32 10.23 -176.58 -1.81 -14.12 16 21 C 0.16 2.78 6.78 42.92 0.29 3.08 16 22 C -0.10 -1.00 10.14 71.24 0.72 -0.28 16 23 C -0.17 -2.45 9.64 22.14 0.21 -2.24 16 24 C -0.05 -0.91 9.89 22.53 0.22 -0.69 16 25 C -0.13 -3.42 5.74 -21.28 -0.12 -3.55 16 26 C -0.03 -0.88 9.35 22.82 0.21 -0.67 16 27 H 0.04 1.85 5.65 -2.39 -0.01 1.83 16 28 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16 29 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.07 4.10 5.95 -2.39 -0.01 4.08 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.40 14.44 6.53 -92.71 -0.60 13.83 16 34 H 0.15 3.47 6.35 -2.91 -0.02 3.45 16 35 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 36 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.10 0.43 8.07 -2.39 -0.02 0.41 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 40 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.14 4.13 7.62 -2.91 -0.02 4.11 16 Total: -1.00 -70.14 339.11 2.85 -67.29 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.45 Total: 25.34 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.22 Total: -10.65 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -3.80 Total: -97.85 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.05 Total: -28.18 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -70.14 2.85 -67.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.061 kcal (2) G-P(sol) polarization free energy of solvation -70.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds