Wall clock time and date at job start Tue Mar 31 2020 03:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99892 * 2 1 4 4 H 1.48492 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46962 * 299.99613 * 3 2 1 6 6 H 1.48497 * 109.47444 * 59.99557 * 3 2 1 7 7 C 1.37875 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00424 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99935 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47528 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.47282 * 179.97438 * 10 9 7 12 12 C 1.36015 * 116.99558 * 180.02562 * 11 10 9 13 13 C 1.38705 * 120.50021 * 359.97438 * 12 11 10 14 14 C 1.38855 * 118.45618 * 179.97438 * 13 12 11 15 15 C 1.38006 * 119.37271 * 0.02562 * 14 13 12 16 16 N 1.32020 * 120.95239 * 0.02562 * 15 14 13 17 17 C 1.32302 * 121.68060 * 359.97417 * 16 15 14 18 18 N 1.39242 * 119.73716 * 179.97438 * 17 16 15 19 19 C 1.46502 * 119.99760 * 0.02562 * 18 17 16 20 20 C 1.50701 * 109.47166 * 179.97438 * 19 18 17 21 21 C 1.38235 * 119.99929 * 269.72218 * 20 19 18 22 22 C 1.38230 * 120.00276 * 179.76233 * 21 20 19 23 23 C 1.38238 * 119.99850 * 0.51654 * 22 21 20 24 24 C 1.38239 * 119.99741 * 359.73536 * 23 22 21 25 25 C 1.38234 * 120.00064 * 89.99805 * 20 19 18 26 26 H 0.96996 * 120.00329 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.47358 * 59.99452 * 9 7 2 28 28 H 1.09004 * 109.47006 * 299.99912 * 9 7 2 29 29 H 1.09007 * 109.46880 * 59.99610 * 10 9 7 30 30 H 1.09001 * 109.46770 * 300.00274 * 10 9 7 31 31 H 1.07997 * 120.76650 * 0.25718 * 13 12 11 32 32 H 1.07996 * 120.30932 * 180.02562 * 14 13 12 33 33 H 1.07996 * 119.52660 * 179.97438 * 15 14 13 34 34 H 0.96994 * 120.00614 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47060 * 299.99471 * 19 18 17 36 36 H 1.09004 * 109.47517 * 59.99646 * 19 18 17 37 37 H 1.08004 * 119.99866 * 0.02562 * 21 20 19 38 38 H 1.07994 * 120.00561 * 180.23236 * 22 21 20 39 39 H 1.08000 * 120.00441 * 179.72730 * 23 22 21 40 40 H 1.08000 * 119.99643 * 179.97438 * 24 23 22 41 41 H 1.07994 * 119.99875 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5308 -4.8996 0.0011 12 6 2.2717 -6.0402 0.0018 13 6 3.6574 -5.9796 0.0013 14 6 4.3717 -7.1704 0.0025 15 6 3.6887 -8.3695 0.0036 16 7 2.3688 -8.3991 0.0030 17 6 1.6489 -7.2891 0.0019 18 7 0.2587 -7.3676 0.0007 19 6 -0.4012 -8.6756 0.0014 20 6 -1.8960 -8.4841 0.0006 21 6 -2.5828 -8.4012 1.1974 22 6 -3.9533 -8.2207 1.1967 23 6 -4.6384 -8.1338 -0.0008 24 6 -3.9522 -8.2220 -1.1976 25 6 -2.5810 -8.3972 -1.1969 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8895 31 1 4.1688 -5.0284 0.0045 32 1 5.4516 -7.1581 0.0025 33 1 4.2418 -9.2971 0.0041 34 1 -0.2729 -6.5563 -0.0005 35 1 -0.1053 -9.2322 -0.8878 36 1 -0.1068 -9.2306 0.8922 37 1 -2.0481 -8.4732 2.1330 38 1 -4.4894 -8.1522 2.1317 39 1 -5.7097 -7.9972 -0.0014 40 1 -4.4875 -8.1545 -2.1332 41 1 -2.0450 -8.4669 -2.1319 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162233603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:06 Heat of formation + Delta-G solvation = 0.052003 kcal Electronic energy + Delta-G solvation = -22499.461872 eV Core-core repulsion = 19150.423645 eV Total energy + Delta-G solvation = -3349.038227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55840 -40.20861 -39.07982 -36.74562 -35.48536 -33.10368 -32.76473 -31.81802 -31.77060 -29.83936 -27.20451 -26.68185 -24.28598 -23.59819 -23.49888 -22.48124 -21.98388 -19.44832 -18.67222 -18.06247 -17.82951 -17.44344 -17.04758 -16.54342 -16.28908 -16.19955 -15.55314 -15.40824 -15.22457 -14.97732 -14.36361 -14.33732 -14.17323 -13.92782 -13.76143 -13.47009 -13.45781 -13.19618 -12.77730 -12.72833 -12.42344 -11.96974 -11.94744 -11.74124 -11.61423 -11.42046 -11.18652 -10.63348 -10.55196 -10.14194 -9.85299 -9.78103 -8.30341 -8.27114 -6.40535 0.29907 0.38925 0.45557 0.47530 1.40964 1.41457 1.54925 2.22601 2.30253 2.47587 2.94207 2.96871 3.07705 3.60556 3.81066 3.93558 3.99042 4.08001 4.13323 4.25593 4.27188 4.27733 4.39065 4.41261 4.56955 4.60490 4.72364 4.74515 4.78474 5.05436 5.08840 5.13221 5.30086 5.31789 5.47296 5.51563 5.58394 5.58744 5.64820 5.70638 6.03176 6.06782 6.13514 6.30088 6.62488 6.74542 7.23677 7.29814 8.86058 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.010521 B = 0.003731 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.588847 B = 7503.196995 C = 9848.694690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.974 3.026 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.031 3.969 10 C 0.088 3.912 11 O -0.335 6.335 12 C -0.003 4.003 13 C -0.139 4.139 14 C -0.188 4.188 15 C 0.098 3.902 16 N -0.526 5.526 17 C 0.370 3.630 18 N -0.721 5.721 19 C 0.188 3.812 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.113 4.113 26 H 0.266 0.734 27 H -0.002 1.002 28 H -0.002 1.002 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.191 0.809 34 H 0.408 0.592 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 -19.804 0.005 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.798 3.202 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.006 4.006 10 C 0.013 3.987 11 O -0.249 6.249 12 C -0.055 4.055 13 C -0.165 4.165 14 C -0.210 4.210 15 C -0.057 4.057 16 N -0.246 5.246 17 C 0.132 3.868 18 N -0.356 5.356 19 C 0.065 3.935 20 C -0.119 4.119 21 C -0.131 4.131 22 C -0.148 4.148 23 C -0.137 4.137 24 C -0.148 4.148 25 C -0.131 4.131 26 H 0.075 0.925 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.182 0.818 33 H 0.208 0.792 34 H 0.244 0.756 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.145 0.855 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.472 -20.656 0.005 20.709 hybrid contribution 0.446 2.263 -0.002 2.306 sum -1.027 -18.394 0.004 18.422 Atomic orbital electron populations 1.70121 1.08023 1.28115 1.50719 1.26008 0.95779 1.03588 0.94167 0.85263 0.79112 0.78012 0.77845 1.18104 1.20294 1.20282 1.21429 0.93828 0.91038 1.51983 0.91144 1.18934 0.94490 0.91308 0.95907 1.22820 0.95419 0.80177 1.00290 1.86021 1.36587 1.13058 1.89253 1.19776 0.92002 0.86585 1.07109 1.21773 0.91703 1.01444 1.01569 1.21987 1.02471 0.91346 1.05236 1.22870 0.88010 0.99372 0.95443 1.67292 1.09612 1.27064 1.20584 1.17959 0.86231 0.86570 0.95991 1.44569 1.01096 1.08806 1.81158 1.19980 0.86970 0.84377 1.02191 1.19987 0.94941 1.02858 0.94139 1.21295 0.95089 0.99009 0.97710 1.21471 0.94189 0.99786 0.99390 1.21560 1.01280 0.98555 0.92340 1.21473 0.94168 0.99798 0.99397 1.21295 0.95094 0.99013 0.97705 0.92487 0.98400 0.98389 0.92378 0.92367 0.83995 0.81806 0.79230 0.75582 0.91388 0.91393 0.85474 0.84041 0.83742 0.84041 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.55 -30.53 9.11 25.60 0.23 -30.30 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 9 C 0.03 1.67 5.34 29.85 0.16 1.83 16 10 C 0.09 3.78 4.70 71.98 0.34 4.12 16 11 O -0.34 -13.98 9.38 -93.72 -0.88 -14.86 16 12 C 0.00 -0.12 6.72 22.70 0.15 0.03 16 13 C -0.14 -4.16 9.14 22.53 0.21 -3.95 16 14 C -0.19 -4.36 10.10 22.36 0.23 -4.14 16 15 C 0.10 2.27 11.17 84.61 0.95 3.22 16 16 N -0.53 -15.32 9.57 -192.79 -1.84 -17.17 16 17 C 0.37 12.20 7.50 133.11 1.00 13.20 16 18 N -0.72 -22.15 5.70 -348.28 -1.98 -24.13 16 19 C 0.19 4.71 5.83 85.63 0.50 5.21 16 20 C -0.12 -2.80 5.25 -19.87 -0.10 -2.91 16 21 C -0.11 -2.50 9.70 22.27 0.22 -2.28 16 22 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 23 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 24 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 25 C -0.11 -2.50 9.70 22.27 0.22 -2.29 16 26 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 27 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 28 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 29 H 0.06 2.37 7.69 -2.38 -0.02 2.35 16 30 H 0.06 2.37 7.70 -2.39 -0.02 2.35 16 31 H 0.14 4.06 6.44 -2.91 -0.02 4.04 16 32 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 33 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.41 13.61 7.81 -92.71 -0.72 12.89 16 35 H 0.07 1.67 8.09 -2.39 -0.02 1.66 16 36 H 0.07 1.67 8.08 -2.38 -0.02 1.65 16 37 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 41 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -67.81 353.20 3.13 -64.68 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.31 Total: 26.53 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 5.22 Total: -24.27 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -3.54 Total: -97.34 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.88 Total: -14.86 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -67.81 3.13 -64.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162233603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.733 kcal (2) G-P(sol) polarization free energy of solvation -67.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds