Wall clock time and date at job start Tue Mar 31 2020 03:24:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34230 * 117.00181 * 2 1
4 4 O 1.20822 * 119.99573 * 0.02562 * 3 2 1
5 5 C 1.50700 * 120.00191 * 180.02562 * 3 2 1
6 6 C 1.52998 * 109.47177 * 180.02562 * 5 3 2
7 7 H 1.09000 * 109.56452 * 54.76088 * 6 5 3
8 8 C 1.50442 * 109.56683 * 175.00014 * 6 5 3
9 9 O 1.21274 * 118.48683 * 287.11416 * 8 6 5
10 10 N 1.33378 * 123.01915 * 107.13876 * 8 6 5
11 11 C 1.45646 * 124.59424 * 4.29434 * 10 8 6
12 12 C 1.52995 * 110.73679 * 338.12346 * 11 10 8
13 13 N 1.47049 * 109.56644 * 294.40532 * 6 5 3
14 14 C 1.34781 * 121.35196 * 102.93171 * 13 6 5
15 15 O 1.21280 * 119.99882 * 359.97438 * 14 13 6
16 16 C 1.50701 * 120.00101 * 179.97438 * 14 13 6
17 17 C 1.52997 * 109.46936 * 180.02562 * 16 14 13
18 18 C 1.50701 * 109.46936 * 179.97438 * 17 16 14
19 19 H 1.08001 * 119.99865 * 0.02562 * 18 17 16
20 20 C 1.37879 * 120.00351 * 179.97438 * 18 17 16
21 21 N 1.31513 * 119.99720 * 0.02562 * 20 18 17
22 22 Si 1.86794 * 120.00284 * 180.02562 * 20 18 17
23 23 H 1.48507 * 109.47105 * 60.00174 * 22 20 18
24 24 H 1.48499 * 109.47092 * 180.02562 * 22 20 18
25 25 H 1.48501 * 109.47305 * 300.00415 * 22 20 18
26 26 H 1.08998 * 109.47253 * 59.99967 * 1 2 3
27 27 H 1.09010 * 109.47270 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.46860 * 299.99885 * 1 2 3
29 29 H 1.09004 * 109.46838 * 59.99789 * 5 3 2
30 30 H 1.08998 * 109.46970 * 300.00191 * 5 3 2
31 31 H 0.97001 * 117.70520 * 184.31854 * 10 8 6
32 32 H 1.09002 * 109.21771 * 98.43438 * 11 10 8
33 33 H 1.09003 * 109.21616 * 217.81222 * 11 10 8
34 34 H 1.08996 * 109.71783 * 166.37912 * 12 11 10
35 35 H 1.09000 * 109.71695 * 287.02971 * 12 11 10
36 36 H 1.09003 * 109.46841 * 300.00018 * 16 14 13
37 37 H 1.09001 * 109.46474 * 59.99997 * 16 14 13
38 38 H 1.09003 * 109.47354 * 299.99684 * 17 16 14
39 39 H 1.08994 * 109.47371 * 60.00286 * 17 16 14
40 40 H 0.96997 * 120.00001 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2092 0.0005
5 6 3.5663 1.2748 -0.0006
6 6 4.0001 2.7420 0.0002
7 1 3.5357 3.2595 0.8396
8 6 5.4972 2.8247 0.1232
9 8 6.0047 2.5679 1.1943
10 7 6.2920 3.1679 -0.8915
11 6 5.8220 3.5885 -2.2043
12 6 4.3985 3.0876 -2.4562
13 7 3.5902 3.3774 -1.2610
14 6 2.5183 4.1924 -1.3197
15 8 1.8697 4.4142 -0.3191
16 6 2.1258 4.8281 -2.6284
17 6 0.8856 5.6995 -2.4204
18 6 0.4934 6.3357 -3.7290
19 1 1.0707 6.1378 -4.6201
20 6 -0.6031 7.1695 -3.7891
21 7 -1.3064 7.4100 -2.7041
22 14 -1.0897 7.9574 -5.4113
23 1 -1.3907 6.8968 -6.4062
24 1 -2.2933 8.8034 -5.2094
25 1 0.0286 8.7989 -5.9080
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3634 -1.0277 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 3.9557 0.7809 -0.8908
30 1 3.9564 0.7805 0.8891
31 1 7.2503 3.1347 -0.7450
32 1 5.8340 4.6772 -2.2579
33 1 6.4852 3.1845 -2.9692
34 1 3.9750 3.6017 -3.3190
35 1 4.4137 2.0130 -2.6386
36 1 2.9465 5.4458 -2.9929
37 1 1.9049 4.0495 -3.3586
38 1 0.0646 5.0821 -2.0557
39 1 1.1068 6.4780 -1.6903
40 1 -2.0776 7.9969 -2.7462
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000291573402.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:24:06
Heat of formation + Delta-G solvation = -147.998764 kcal
Electronic energy + Delta-G solvation = -25303.769467 eV
Core-core repulsion = 21505.169263 eV
Total energy + Delta-G solvation = -3798.600204 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 298.141 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-41.15827 -40.00090 -38.76780 -36.51829 -36.38562 -34.42656 -33.48314 -32.21788
-30.68038 -29.26248 -27.80587 -26.13482 -24.96527 -23.96773 -21.80963 -21.05609
-19.61015 -18.57997 -17.82739 -17.48977 -16.98063 -16.76048 -16.45672 -16.24398
-15.81144 -15.44504 -14.91313 -14.78599 -14.43922 -14.04564 -13.69321 -13.66616
-13.31687 -13.02053 -12.58624 -12.34821 -12.18168 -12.06927 -11.94980 -11.94212
-11.58693 -11.11515 -10.91884 -10.68517 -10.63318 -10.47040 -10.17231 -9.93707
-9.59779 -9.41115 -9.14493 -8.94150 -8.57311 -8.31254 -5.95266 -4.00108
2.20576 2.35352 2.65363 2.89053 3.15273 3.32422 3.33546 3.38558
3.39870 4.21042 4.42878 4.46700 4.53648 4.76091 4.82612 4.94656
5.06749 5.16436 5.21051 5.24416 5.27362 5.36156 5.39383 5.56741
5.60397 5.71811 6.15199 6.19163 6.31859 6.47846 6.54411 6.86193
6.97243 7.66613 7.74720 7.87023 7.88545 7.90422 8.09062 8.38873
8.82869 9.08653 9.63181 11.15558
Molecular weight = 298.14amu
Principal moments of inertia in cm(-1)
A = 0.014884 B = 0.004606 C = 0.003818
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1880.814864 B = 6077.651177 C = 7332.091506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 O -0.368 6.368
3 C 0.442 3.558
4 O -0.452 6.452
5 C -0.113 4.113
6 C 0.143 3.857
7 H 0.137 0.863
8 C 0.524 3.476
9 O -0.545 6.545
10 N -0.714 5.714
11 C 0.093 3.907
12 C 0.091 3.909
13 N -0.631 5.631
14 C 0.515 3.485
15 O -0.486 6.486
16 C -0.124 4.124
17 C 0.038 3.962
18 C -0.528 4.528
19 H 0.054 0.946
20 C 0.059 3.941
21 N -0.889 5.889
22 Si 0.892 3.108
23 H -0.277 1.277
24 H -0.287 1.287
25 H -0.277 1.277
26 H 0.065 0.935
27 H 0.097 0.903
28 H 0.063 0.937
29 H 0.107 0.893
30 H 0.120 0.880
31 H 0.400 0.600
32 H 0.075 0.925
33 H 0.090 0.910
34 H 0.114 0.886
35 H 0.074 0.926
36 H 0.077 0.923
37 H 0.076 0.924
38 H 0.024 0.976
39 H 0.023 0.977
40 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.168 -15.434 0.201 20.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 O -0.286 6.286
3 C 0.281 3.719
4 O -0.334 6.334
5 C -0.152 4.152
6 C 0.035 3.965
7 H 0.154 0.846
8 C 0.309 3.691
9 O -0.422 6.422
10 N -0.366 5.366
11 C -0.033 4.033
12 C -0.033 4.033
13 N -0.371 5.371
14 C 0.305 3.695
15 O -0.356 6.356
16 C -0.164 4.164
17 C 0.001 3.999
18 C -0.566 4.566
19 H 0.073 0.927
20 C -0.143 4.143
21 N -0.527 5.527
22 Si 0.720 3.280
23 H -0.203 1.203
24 H -0.213 1.213
25 H -0.203 1.203
26 H 0.083 0.917
27 H 0.116 0.884
28 H 0.082 0.918
29 H 0.125 0.875
30 H 0.138 0.862
31 H 0.236 0.764
32 H 0.094 0.906
33 H 0.108 0.892
34 H 0.132 0.868
35 H 0.092 0.908
36 H 0.095 0.905
37 H 0.094 0.906
38 H 0.043 0.957
39 H 0.041 0.959
40 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 13.344 -14.953 1.355 20.087
hybrid contribution -0.051 0.431 -1.047 1.133
sum 13.293 -14.522 0.308 19.689
Atomic orbital electron populations
1.23230 0.76122 1.03195 1.03036 1.86428 1.23555 1.33707 1.84921
1.23406 0.91698 0.82041 0.74711 1.91041 1.66333 1.34738 1.41333
1.21520 0.89715 0.97444 1.06564 1.20916 0.90165 0.93343 0.92082
0.84572 1.20089 0.89377 0.76036 0.83566 1.90785 1.75219 1.50059
1.26155 1.45324 1.10357 1.68130 1.12783 1.21862 0.96416 1.00979
0.83997 1.22023 0.89675 1.01612 0.89988 1.48556 1.31144 1.49878
1.07531 1.21494 0.78005 0.77269 0.92752 1.90711 1.49566 1.58010
1.37294 1.21860 1.02465 0.99878 0.92169 1.18888 0.90224 0.93950
0.96842 1.21164 1.12250 1.28319 0.94865 0.92745 1.25018 0.96421
0.96611 0.96255 1.69991 1.18296 1.36822 1.27589 0.86669 0.77957
0.79330 0.84049 1.20289 1.21296 1.20267 0.91669 0.88433 0.91848
0.87530 0.86225 0.76411 0.90647 0.89153 0.86825 0.90778 0.90468
0.90558 0.95714 0.95900 0.92900
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.43 10.56 101.05 1.07 1.49 16
2 O -0.37 -4.75 10.57 -39.26 -0.41 -5.17 16
3 C 0.44 6.42 7.83 36.01 0.28 6.70 16
4 O -0.45 -8.68 11.45 -26.77 -0.31 -8.98 16
5 C -0.11 -1.27 5.38 -27.88 -0.15 -1.42 16
6 C 0.14 1.93 2.25 -68.91 -0.16 1.78 16
7 H 0.14 2.28 7.05 -51.93 -0.37 1.92 16
8 C 0.52 6.52 7.10 -11.73 -0.08 6.44 16
9 O -0.55 -8.41 17.80 5.56 0.10 -8.31 16
10 N -0.71 -6.36 5.42 -61.32 -0.33 -6.69 16
11 C 0.09 0.64 7.34 -4.50 -0.03 0.61 16
12 C 0.09 0.82 6.30 -3.68 -0.02 0.79 16
13 N -0.63 -8.83 2.40 -166.62 -0.40 -9.22 16
14 C 0.52 9.93 6.57 -10.98 -0.07 9.86 16
15 O -0.49 -11.66 12.91 -18.70 -0.24 -11.90 16
16 C -0.12 -2.46 4.01 -27.88 -0.11 -2.57 16
17 C 0.04 1.03 4.26 -27.88 -0.12 0.92 16
18 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16
19 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16
20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
21 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16
22 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16
23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
26 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16
27 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16
28 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16
29 H 0.11 0.92 7.34 -51.93 -0.38 0.54 16
30 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16
31 H 0.40 2.89 8.80 -40.82 -0.36 2.54 16
32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
33 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16
34 H 0.11 0.98 6.03 -51.93 -0.31 0.66 16
35 H 0.07 0.52 7.39 -51.93 -0.38 0.14 16
36 H 0.08 1.35 7.88 -51.93 -0.41 0.94 16
37 H 0.08 1.38 7.83 -51.93 -0.41 0.97 16
38 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16
39 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16
40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16
LS Contribution 334.24 15.07 5.04 5.04
Total: -1.00 -38.51 334.24 -6.19 -44.70
By element:
Atomic # 1 Polarization: 5.26 SS G_CDS: -5.54 Total: -0.28 kcal
Atomic # 6 Polarization: 10.90 SS G_CDS: 0.19 Total: 11.09 kcal
Atomic # 7 Polarization: -42.66 SS G_CDS: 0.00 Total: -42.65 kcal
Atomic # 8 Polarization: -33.49 SS G_CDS: -0.86 Total: -34.36 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal
Total LS contribution 5.04 Total: 5.04 kcal
Total: -38.51 -6.19 -44.70 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000291573402.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -103.303 kcal
(2) G-P(sol) polarization free energy of solvation -38.507 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.809 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.999 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds