Wall clock time and date at job start Tue Mar 31 2020 03:24:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34230 * 117.00181 * 2 1
4 4 O 1.20822 * 119.99573 * 0.02562 * 3 2 1
5 5 C 1.50700 * 120.00191 * 180.02562 * 3 2 1
6 6 C 1.52998 * 109.47177 * 180.02562 * 5 3 2
7 7 H 1.09000 * 109.56452 * 54.76088 * 6 5 3
8 8 C 1.50442 * 109.56683 * 175.00014 * 6 5 3
9 9 O 1.21274 * 118.48683 * 287.11416 * 8 6 5
10 10 N 1.33378 * 123.01915 * 107.13876 * 8 6 5
11 11 C 1.45646 * 124.59424 * 4.29434 * 10 8 6
12 12 C 1.52995 * 110.73679 * 338.12346 * 11 10 8
13 13 N 1.47049 * 109.56644 * 294.40532 * 6 5 3
14 14 C 1.34781 * 121.35196 * 102.93171 * 13 6 5
15 15 O 1.21280 * 119.99882 * 359.97438 * 14 13 6
16 16 C 1.50701 * 120.00101 * 179.97438 * 14 13 6
17 17 C 1.52997 * 109.46936 * 180.02562 * 16 14 13
18 18 C 1.50701 * 109.46936 * 179.97438 * 17 16 14
19 19 H 1.08001 * 119.99865 * 0.02562 * 18 17 16
20 20 C 1.37879 * 120.00351 * 179.97438 * 18 17 16
21 21 N 1.31513 * 119.99720 * 0.02562 * 20 18 17
22 22 Si 1.86794 * 120.00284 * 180.02562 * 20 18 17
23 23 H 1.48507 * 109.47105 * 60.00174 * 22 20 18
24 24 H 1.48499 * 109.47092 * 180.02562 * 22 20 18
25 25 H 1.48501 * 109.47305 * 300.00415 * 22 20 18
26 26 H 1.08998 * 109.47253 * 59.99967 * 1 2 3
27 27 H 1.09010 * 109.47270 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.46860 * 299.99885 * 1 2 3
29 29 H 1.09004 * 109.46838 * 59.99789 * 5 3 2
30 30 H 1.08998 * 109.46970 * 300.00191 * 5 3 2
31 31 H 0.97001 * 117.70520 * 184.31854 * 10 8 6
32 32 H 1.09002 * 109.21771 * 98.43438 * 11 10 8
33 33 H 1.09003 * 109.21616 * 217.81222 * 11 10 8
34 34 H 1.08996 * 109.71783 * 166.37912 * 12 11 10
35 35 H 1.09000 * 109.71695 * 287.02971 * 12 11 10
36 36 H 1.09003 * 109.46841 * 300.00018 * 16 14 13
37 37 H 1.09001 * 109.46474 * 59.99997 * 16 14 13
38 38 H 1.09003 * 109.47354 * 299.99684 * 17 16 14
39 39 H 1.08994 * 109.47371 * 60.00286 * 17 16 14
40 40 H 0.96997 * 120.00001 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2092 0.0005
5 6 3.5663 1.2748 -0.0006
6 6 4.0001 2.7420 0.0002
7 1 3.5357 3.2595 0.8396
8 6 5.4972 2.8247 0.1232
9 8 6.0047 2.5679 1.1943
10 7 6.2920 3.1679 -0.8915
11 6 5.8220 3.5885 -2.2043
12 6 4.3985 3.0876 -2.4562
13 7 3.5902 3.3774 -1.2610
14 6 2.5183 4.1924 -1.3197
15 8 1.8697 4.4142 -0.3191
16 6 2.1258 4.8281 -2.6284
17 6 0.8856 5.6995 -2.4204
18 6 0.4934 6.3357 -3.7290
19 1 1.0707 6.1378 -4.6201
20 6 -0.6031 7.1695 -3.7891
21 7 -1.3064 7.4100 -2.7041
22 14 -1.0897 7.9574 -5.4113
23 1 -1.3907 6.8968 -6.4062
24 1 -2.2933 8.8034 -5.2094
25 1 0.0286 8.7989 -5.9080
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3634 -1.0277 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 3.9557 0.7809 -0.8908
30 1 3.9564 0.7805 0.8891
31 1 7.2503 3.1347 -0.7450
32 1 5.8340 4.6772 -2.2579
33 1 6.4852 3.1845 -2.9692
34 1 3.9750 3.6017 -3.3190
35 1 4.4137 2.0130 -2.6386
36 1 2.9465 5.4458 -2.9929
37 1 1.9049 4.0495 -3.3586
38 1 0.0646 5.0821 -2.0557
39 1 1.1068 6.4780 -1.6903
40 1 -2.0776 7.9969 -2.7462
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000291573402.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:24:06
Heat of formation + Delta-G solvation = -177.680708 kcal
Electronic energy + Delta-G solvation = -25305.056572 eV
Core-core repulsion = 21505.169263 eV
Total energy + Delta-G solvation = -3799.887310 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 298.141 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-42.23789 -41.10011 -40.10611 -37.68342 -37.46913 -35.63833 -35.35386 -33.57953
-32.40873 -30.14675 -28.90966 -27.75468 -26.33396 -24.78171 -23.67804 -22.10989
-20.95482 -19.53382 -19.03154 -18.81863 -18.23386 -17.96126 -17.77553 -17.28485
-17.07048 -16.68186 -16.44145 -16.20044 -15.82688 -15.04186 -15.00007 -14.81455
-14.35564 -14.21019 -14.17818 -13.78237 -13.51312 -13.21991 -13.12017 -12.93387
-12.77185 -12.73328 -12.61188 -12.47162 -11.89883 -11.79135 -11.63335 -11.56097
-11.33464 -11.26757 -10.55209 -10.53167 -10.18169 -9.70542 -8.16188 -6.31031
1.22138 1.22790 1.42615 1.47628 1.55234 1.67982 1.78377 1.88168
2.25828 2.44155 3.16791 3.33464 3.45328 3.70514 3.87873 3.97991
4.06842 4.16610 4.27075 4.30114 4.36774 4.44423 4.49393 4.55744
4.57826 4.67817 4.75341 4.97831 5.08660 5.34827 5.41197 5.51155
5.64071 5.76737 5.86733 6.11598 6.17994 6.39041 6.77108 6.88314
7.01781 7.38987 7.42669 8.96535
Molecular weight = 298.14amu
Principal moments of inertia in cm(-1)
A = 0.014884 B = 0.004606 C = 0.003818
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1880.814864 B = 6077.651177 C = 7332.091506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.362 6.362
3 C 0.440 3.560
4 O -0.505 6.505
5 C -0.103 4.103
6 C 0.142 3.858
7 H 0.093 0.907
8 C 0.530 3.470
9 O -0.580 6.580
10 N -0.697 5.697
11 C 0.093 3.907
12 C 0.077 3.923
13 N -0.621 5.621
14 C 0.515 3.485
15 O -0.549 6.549
16 C -0.110 4.110
17 C 0.046 3.954
18 C -0.540 4.540
19 H 0.081 0.919
20 C -0.009 4.009
21 N -0.941 5.941
22 Si 0.975 3.025
23 H -0.261 1.261
24 H -0.291 1.291
25 H -0.260 1.260
26 H 0.049 0.951
27 H 0.139 0.861
28 H 0.050 0.950
29 H 0.146 0.854
30 H 0.138 0.862
31 H 0.413 0.587
32 H 0.073 0.927
33 H 0.142 0.858
34 H 0.123 0.877
35 H 0.107 0.893
36 H 0.108 0.892
37 H 0.101 0.899
38 H -0.026 1.026
39 H -0.023 1.023
40 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.920 -17.042 -3.233 24.232
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.279 6.279
3 C 0.283 3.717
4 O -0.392 6.392
5 C -0.142 4.142
6 C 0.034 3.966
7 H 0.111 0.889
8 C 0.315 3.685
9 O -0.460 6.460
10 N -0.348 5.348
11 C -0.031 4.031
12 C -0.045 4.045
13 N -0.358 5.358
14 C 0.305 3.695
15 O -0.424 6.424
16 C -0.150 4.150
17 C 0.008 3.992
18 C -0.578 4.578
19 H 0.099 0.901
20 C -0.206 4.206
21 N -0.581 5.581
22 Si 0.799 3.201
23 H -0.185 1.185
24 H -0.217 1.217
25 H -0.184 1.184
26 H 0.068 0.932
27 H 0.157 0.843
28 H 0.069 0.931
29 H 0.164 0.836
30 H 0.156 0.844
31 H 0.251 0.749
32 H 0.092 0.908
33 H 0.160 0.840
34 H 0.141 0.859
35 H 0.125 0.875
36 H 0.127 0.873
37 H 0.120 0.880
38 H -0.008 1.008
39 H -0.005 1.005
40 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 16.195 -16.615 -2.151 23.301
hybrid contribution -0.892 0.879 0.042 1.253
sum 15.303 -15.735 -2.109 22.051
Atomic orbital electron populations
1.23416 0.75404 1.05405 1.01695 1.86438 1.24288 1.32783 1.84353
1.24114 0.92991 0.81606 0.73023 1.91069 1.67692 1.36473 1.43919
1.21584 0.87224 0.96121 1.09231 1.20835 0.91086 0.94294 0.90405
0.88885 1.19739 0.88634 0.76307 0.83866 1.90777 1.75402 1.52170
1.27673 1.45253 1.10705 1.66167 1.12689 1.22093 0.95924 1.01182
0.83867 1.22549 0.89953 1.04062 0.87913 1.48353 1.29895 1.48061
1.09522 1.21310 0.78916 0.77750 0.91561 1.90695 1.52183 1.60520
1.39002 1.21605 1.00077 0.99901 0.93373 1.18645 0.91987 0.93076
0.95473 1.21686 1.12467 1.27885 0.95740 0.90132 1.26181 0.96441
0.97359 1.00610 1.70202 1.19077 1.37975 1.30833 0.85356 0.77676
0.78483 0.78605 1.18529 1.21694 1.18396 0.93231 0.84341 0.93095
0.83640 0.84414 0.74896 0.90841 0.84020 0.85852 0.87508 0.87347
0.88050 1.00793 1.00482 0.93000
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.78 10.56 113.37 1.20 1.97 16
2 O -0.36 -9.10 10.57 -51.41 -0.54 -9.65 16
3 C 0.44 12.94 7.83 71.24 0.56 13.49 16
4 O -0.51 -20.68 11.45 29.65 0.34 -20.34 16
5 C -0.10 -2.16 5.38 29.85 0.16 -2.00 16
6 C 0.14 3.81 2.25 44.06 0.10 3.91 16
7 H 0.09 3.38 7.05 -2.39 -0.02 3.36 16
8 C 0.53 12.31 7.10 87.79 0.62 12.94 16
9 O -0.58 -17.43 17.80 -3.01 -0.05 -17.48 16
10 N -0.70 -9.92 5.42 -467.08 -2.53 -12.46 16
11 C 0.09 0.84 7.34 86.54 0.64 1.47 16
12 C 0.08 1.06 6.30 86.25 0.54 1.60 16
13 N -0.62 -16.72 2.40 -799.45 -1.92 -18.63 16
14 C 0.51 20.47 6.57 87.66 0.58 21.04 16
15 O -0.55 -28.56 12.91 20.17 0.26 -28.30 16
16 C -0.11 -4.35 4.01 29.85 0.12 -4.23 16
17 C 0.05 2.60 4.26 29.85 0.13 2.72 16
18 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16
19 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16
20 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16
21 N -0.94 -60.73 13.29 21.45 0.28 -60.44 16
22 Si 0.98 44.00 29.54 68.60 2.03 46.02 16
23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16
24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16
25 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16
26 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16
27 H 0.14 1.95 8.14 -2.38 -0.02 1.93 16
28 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16
29 H 0.15 1.91 7.34 -2.39 -0.02 1.90 16
30 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16
31 H 0.41 4.37 8.80 -92.71 -0.82 3.55 16
32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
33 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16
34 H 0.12 1.54 6.03 -2.39 -0.01 1.52 16
35 H 0.11 0.88 7.39 -2.39 -0.02 0.86 16
36 H 0.11 3.58 7.88 -2.39 -0.02 3.56 16
37 H 0.10 3.48 7.83 -2.39 -0.02 3.46 16
38 H -0.03 -1.74 8.10 -2.39 -0.02 -1.76 16
39 H -0.02 -1.51 8.10 -2.39 -0.02 -1.53 16
40 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16
Total: -1.00 -93.47 334.24 3.45 -90.01
By element:
Atomic # 1 Polarization: 8.44 SS G_CDS: 0.25 Total: 8.70 kcal
Atomic # 6 Polarization: 17.24 SS G_CDS: 5.33 Total: 22.57 kcal
Atomic # 7 Polarization: -87.37 SS G_CDS: -4.16 Total: -91.53 kcal
Atomic # 8 Polarization: -75.78 SS G_CDS: 0.00 Total: -75.77 kcal
Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal
Total: -93.47 3.45 -90.01 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000291573402.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.669 kcal
(2) G-P(sol) polarization free energy of solvation -93.466 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.135 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.012 kcal
(6) G-S(sol) free energy of system = (1) + (5) -177.681 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds