Wall clock time and date at job start Tue Mar 31 2020 04:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00139 * 2 1 4 4 H 1.48505 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47069 * 299.99551 * 3 2 1 6 6 H 1.48492 * 109.47429 * 59.99820 * 3 2 1 7 7 C 1.38814 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00050 * 197.61134 * 7 2 1 9 9 N 1.36939 * 119.99730 * 17.60689 * 7 2 1 10 10 C 1.46967 * 120.59358 * 208.20890 * 9 7 2 11 11 C 1.53366 * 108.63800 * 235.20652 * 10 9 7 12 12 N 1.46967 * 108.63578 * 310.58160 * 11 10 9 13 13 C 1.34781 * 120.58995 * 235.20305 * 12 11 10 14 14 O 1.21275 * 120.00142 * 359.72349 * 13 12 11 15 15 C 1.50705 * 119.99748 * 179.97438 * 13 12 11 16 16 O 1.42899 * 109.47104 * 179.72481 * 15 13 12 17 17 C 1.42897 * 114.00007 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.47338 * 180.02562 * 17 16 15 19 19 H 1.08997 * 110.45678 * 52.39190 * 18 17 16 20 20 C 1.54502 * 110.51224 * 175.00144 * 18 17 16 21 21 C 1.54475 * 104.06634 * 118.64212 * 20 18 17 22 22 O 1.44428 * 104.80279 * 23.97483 * 21 20 18 23 23 C 1.44420 * 105.27481 * 319.49164 * 22 21 20 24 24 C 1.46965 * 118.81562 * 55.47129 * 12 11 10 25 25 C 1.46966 * 120.59612 * 28.19433 * 9 7 2 26 26 H 0.97006 * 119.99919 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.60675 * 115.46509 * 10 9 7 28 28 H 1.08995 * 109.75136 * 355.04131 * 10 9 7 29 29 H 1.08996 * 109.60996 * 190.83520 * 11 10 9 30 30 H 1.09003 * 109.61092 * 70.32209 * 11 10 9 31 31 H 1.09002 * 109.47291 * 299.72901 * 15 13 12 32 32 H 1.09002 * 109.46918 * 59.72400 * 15 13 12 33 33 H 1.09008 * 109.47199 * 300.00088 * 17 16 15 34 34 H 1.08998 * 109.47409 * 59.99670 * 17 16 15 35 35 H 1.08999 * 110.51286 * 237.28937 * 20 18 17 36 36 H 1.09002 * 110.51291 * 359.85816 * 20 18 17 37 37 H 1.09000 * 110.37436 * 142.80739 * 21 20 18 38 38 H 1.08999 * 110.37461 * 265.14280 * 21 20 18 39 39 H 1.09005 * 110.37426 * 281.67895 * 23 22 21 40 40 H 1.08997 * 110.37469 * 159.34256 * 23 22 21 41 41 H 1.09000 * 109.60457 * 64.27086 * 24 12 11 42 42 H 1.08992 * 109.60974 * 184.77847 * 24 12 11 43 43 H 1.09003 * 109.60756 * 244.53967 * 25 9 7 44 44 H 1.09007 * 109.60403 * 4.87137 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0522 -1.2239 0.2835 9 7 1.3736 -2.3604 -0.3577 10 6 1.8121 -3.6537 0.1855 11 6 2.1167 -4.5985 -0.9836 12 7 0.9826 -4.5704 -1.9179 13 6 0.3561 -5.7105 -2.2704 14 8 0.7303 -6.7724 -1.8198 15 6 -0.8059 -5.6662 -3.2291 16 8 -1.2925 -6.9916 -3.4493 17 6 -2.4005 -7.0620 -4.3490 18 6 -2.8362 -8.5200 -4.5085 19 1 -3.0053 -8.9760 -3.5331 20 6 -4.1103 -8.6123 -5.3776 21 6 -3.6728 -9.4536 -6.5970 22 8 -2.5447 -10.2240 -6.1283 23 6 -1.7795 -9.3164 -5.3058 24 6 0.5477 -3.2778 -2.4654 25 6 0.2395 -2.3325 -1.2920 26 1 -0.4850 0.8401 -0.0004 27 1 1.0202 -4.0787 0.8025 28 1 2.7101 -3.5150 0.7874 29 1 2.2563 -5.6121 -0.6080 30 1 3.0205 -4.2676 -1.4953 31 1 -1.6017 -5.0523 -2.8074 32 1 -0.4792 -5.2370 -4.1763 33 1 -3.2296 -6.4769 -3.9508 34 1 -2.1066 -6.6619 -5.3193 35 1 -4.9086 -9.1161 -4.8326 36 1 -4.4313 -7.6190 -5.6915 37 1 -4.4801 -10.1153 -6.9109 38 1 -3.3730 -8.8033 -7.4188 39 1 -1.1893 -8.6449 -5.9295 40 1 -1.1324 -9.8726 -4.6277 41 1 1.3423 -2.8551 -3.0802 42 1 -0.3490 -3.4192 -3.0686 43 1 -0.6643 -2.6634 -0.7802 44 1 0.0979 -1.3181 -1.6651 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329770949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:24 Heat of formation + Delta-G solvation = -94.595070 kcal Electronic energy + Delta-G solvation = -24520.448419 eV Core-core repulsion = 20859.997067 eV Total energy + Delta-G solvation = -3660.451352 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95703 -39.56817 -37.66820 -36.61589 -33.92104 -33.17667 -31.57579 -30.32509 -29.81256 -28.25035 -26.59363 -25.38428 -23.63384 -23.03632 -22.74772 -20.89389 -20.53113 -18.70197 -17.56688 -17.01534 -16.57384 -16.18908 -16.16781 -15.79967 -15.40666 -15.23635 -14.75289 -14.63746 -13.98611 -13.74336 -13.63829 -13.41048 -13.30504 -12.99406 -12.73736 -12.22782 -12.01157 -11.97781 -11.70579 -11.61797 -11.40477 -11.12021 -10.91053 -10.87246 -10.79968 -10.53106 -10.30032 -10.09022 -10.06896 -9.89327 -9.81922 -9.35205 -8.66195 -8.30731 -6.77949 -5.91983 -3.36008 2.88101 2.91986 3.29272 3.38167 3.40224 3.66346 3.86439 4.29473 4.39326 4.45982 4.60390 4.73262 4.86516 4.94143 5.03576 5.05466 5.17288 5.21221 5.24762 5.28563 5.29928 5.37608 5.49041 5.58553 5.69057 5.70558 5.79613 5.85568 5.88904 6.03532 6.14327 6.25949 6.37144 6.50676 6.71493 6.82741 6.96853 7.14077 7.37504 7.67281 7.82720 8.29514 8.50576 9.05848 9.68353 10.25239 11.15941 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.033132 B = 0.002687 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.889289 B =10419.389561 C =10958.176176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.098 3.902 12 N -0.596 5.596 13 C 0.511 3.489 14 O -0.539 6.539 15 C 0.047 3.953 16 O -0.363 6.363 17 C 0.068 3.932 18 C -0.120 4.120 19 H 0.095 0.905 20 C -0.149 4.149 21 C 0.044 3.956 22 O -0.378 6.378 23 C 0.054 3.946 24 C 0.078 3.922 25 C 0.157 3.843 26 H 0.255 0.745 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.024 0.976 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 -11.944 -12.329 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.004 3.996 11 C -0.026 4.026 12 N -0.331 5.331 13 C 0.298 3.702 14 O -0.416 6.416 15 C -0.032 4.032 16 O -0.281 6.281 17 C -0.009 4.009 18 C -0.139 4.139 19 H 0.113 0.887 20 C -0.187 4.187 21 C -0.033 4.033 22 O -0.297 6.297 23 C -0.023 4.023 24 C -0.046 4.046 25 C 0.030 3.970 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.042 0.958 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.837 -12.736 -12.023 18.801 hybrid contribution 0.101 1.614 -0.067 1.618 sum -6.736 -11.122 -12.090 17.755 Atomic orbital electron populations 1.70023 1.05318 1.25642 1.53714 1.25073 0.95316 0.98588 1.00637 0.86198 0.79422 0.83662 0.77339 1.20171 1.21472 1.21654 1.19256 0.92928 0.84629 1.41552 0.91350 1.43998 1.36678 1.01639 1.49111 1.21312 0.98542 0.86961 0.92785 1.22213 0.87460 1.01181 0.91746 1.48010 1.33118 1.06464 1.45476 1.20087 0.83794 0.84015 0.82302 1.90665 1.65988 1.29414 1.55541 1.22253 0.96342 0.85666 0.98979 1.87989 1.48855 1.25760 1.65472 1.22607 0.89109 0.96112 0.93047 1.22506 0.95057 0.95193 1.01128 0.88662 1.22942 0.97591 1.01431 0.96706 1.23410 0.89467 0.94566 0.95874 1.89138 1.37983 1.35156 1.67436 1.23483 0.93760 0.92327 0.92714 1.22805 0.98978 0.84046 0.98783 1.21266 0.89341 0.98616 0.87773 0.93516 0.95798 0.91396 0.89884 0.91809 0.90135 0.90520 0.92606 0.92940 0.90085 0.90140 0.89071 0.92261 0.92006 0.88396 0.91480 0.91327 0.95781 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.84 11.20 55.49 0.62 -24.22 16 2 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 3 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.62 9.58 -15.06 -0.14 -6.77 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.10 2.97 -171.77 -0.51 -14.61 16 10 C 0.13 2.71 6.67 -3.60 -0.02 2.68 16 11 C 0.10 1.79 6.59 -3.60 -0.02 1.76 16 12 N -0.60 -10.62 2.94 -172.22 -0.51 -11.13 16 13 C 0.51 9.04 7.77 -10.98 -0.09 8.96 16 14 O -0.54 -11.36 15.90 -14.35 -0.23 -11.59 16 15 C 0.05 0.64 4.76 36.01 0.17 0.81 16 16 O -0.36 -5.08 9.79 -55.14 -0.54 -5.62 16 17 C 0.07 0.67 5.08 37.16 0.19 0.86 16 18 C -0.12 -1.13 3.39 -89.05 -0.30 -1.43 16 19 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.15 -1.05 6.74 -25.17 -0.17 -1.22 16 21 C 0.04 0.33 7.63 37.93 0.29 0.62 16 22 O -0.38 -4.20 11.65 -35.23 -0.41 -4.61 16 23 C 0.05 0.56 7.10 37.93 0.27 0.83 16 24 C 0.08 1.32 6.53 -3.37 -0.02 1.30 16 25 C 0.16 3.42 5.53 -3.37 -0.02 3.40 16 26 H 0.25 6.76 8.31 -40.82 -0.34 6.43 16 27 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 29 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 0.98 7.75 -51.93 -0.40 0.57 16 32 H 0.08 0.85 7.89 -51.93 -0.41 0.44 16 33 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.05 0.44 7.96 -51.93 -0.41 0.03 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.45 7.73 -51.93 -0.40 0.05 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.62 7.75 -51.93 -0.40 0.21 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.07 0.93 5.91 -51.93 -0.31 0.62 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 2.43 5.98 -51.93 -0.31 2.12 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -31.94 351.17 -8.46 -40.41 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.20 Total: -1.38 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 0.04 Total: 11.79 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.39 Total: -49.95 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.18 Total: -21.82 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.94 -8.46 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329770949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.188 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds