Wall clock time and date at job start Tue Mar 31 2020 04:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00139 * 2 1 4 4 H 1.48505 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47069 * 299.99551 * 3 2 1 6 6 H 1.48492 * 109.47429 * 59.99820 * 3 2 1 7 7 C 1.38814 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00050 * 197.61134 * 7 2 1 9 9 N 1.36939 * 119.99730 * 17.60689 * 7 2 1 10 10 C 1.46967 * 120.59358 * 208.20890 * 9 7 2 11 11 C 1.53366 * 108.63800 * 235.20652 * 10 9 7 12 12 N 1.46967 * 108.63578 * 310.58160 * 11 10 9 13 13 C 1.34781 * 120.58995 * 235.20305 * 12 11 10 14 14 O 1.21275 * 120.00142 * 359.72349 * 13 12 11 15 15 C 1.50705 * 119.99748 * 179.97438 * 13 12 11 16 16 O 1.42899 * 109.47104 * 179.72481 * 15 13 12 17 17 C 1.42897 * 114.00007 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.47338 * 180.02562 * 17 16 15 19 19 H 1.08997 * 110.45678 * 52.39190 * 18 17 16 20 20 C 1.54502 * 110.51224 * 175.00144 * 18 17 16 21 21 C 1.54475 * 104.06634 * 118.64212 * 20 18 17 22 22 O 1.44428 * 104.80279 * 23.97483 * 21 20 18 23 23 C 1.44420 * 105.27481 * 319.49164 * 22 21 20 24 24 C 1.46965 * 118.81562 * 55.47129 * 12 11 10 25 25 C 1.46966 * 120.59612 * 28.19433 * 9 7 2 26 26 H 0.97006 * 119.99919 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.60675 * 115.46509 * 10 9 7 28 28 H 1.08995 * 109.75136 * 355.04131 * 10 9 7 29 29 H 1.08996 * 109.60996 * 190.83520 * 11 10 9 30 30 H 1.09003 * 109.61092 * 70.32209 * 11 10 9 31 31 H 1.09002 * 109.47291 * 299.72901 * 15 13 12 32 32 H 1.09002 * 109.46918 * 59.72400 * 15 13 12 33 33 H 1.09008 * 109.47199 * 300.00088 * 17 16 15 34 34 H 1.08998 * 109.47409 * 59.99670 * 17 16 15 35 35 H 1.08999 * 110.51286 * 237.28937 * 20 18 17 36 36 H 1.09002 * 110.51291 * 359.85816 * 20 18 17 37 37 H 1.09000 * 110.37436 * 142.80739 * 21 20 18 38 38 H 1.08999 * 110.37461 * 265.14280 * 21 20 18 39 39 H 1.09005 * 110.37426 * 281.67895 * 23 22 21 40 40 H 1.08997 * 110.37469 * 159.34256 * 23 22 21 41 41 H 1.09000 * 109.60457 * 64.27086 * 24 12 11 42 42 H 1.08992 * 109.60974 * 184.77847 * 24 12 11 43 43 H 1.09003 * 109.60756 * 244.53967 * 25 9 7 44 44 H 1.09007 * 109.60403 * 4.87137 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0522 -1.2239 0.2835 9 7 1.3736 -2.3604 -0.3577 10 6 1.8121 -3.6537 0.1855 11 6 2.1167 -4.5985 -0.9836 12 7 0.9826 -4.5704 -1.9179 13 6 0.3561 -5.7105 -2.2704 14 8 0.7303 -6.7724 -1.8198 15 6 -0.8059 -5.6662 -3.2291 16 8 -1.2925 -6.9916 -3.4493 17 6 -2.4005 -7.0620 -4.3490 18 6 -2.8362 -8.5200 -4.5085 19 1 -3.0053 -8.9760 -3.5331 20 6 -4.1103 -8.6123 -5.3776 21 6 -3.6728 -9.4536 -6.5970 22 8 -2.5447 -10.2240 -6.1283 23 6 -1.7795 -9.3164 -5.3058 24 6 0.5477 -3.2778 -2.4654 25 6 0.2395 -2.3325 -1.2920 26 1 -0.4850 0.8401 -0.0004 27 1 1.0202 -4.0787 0.8025 28 1 2.7101 -3.5150 0.7874 29 1 2.2563 -5.6121 -0.6080 30 1 3.0205 -4.2676 -1.4953 31 1 -1.6017 -5.0523 -2.8074 32 1 -0.4792 -5.2370 -4.1763 33 1 -3.2296 -6.4769 -3.9508 34 1 -2.1066 -6.6619 -5.3193 35 1 -4.9086 -9.1161 -4.8326 36 1 -4.4313 -7.6190 -5.6915 37 1 -4.4801 -10.1153 -6.9109 38 1 -3.3730 -8.8033 -7.4188 39 1 -1.1893 -8.6449 -5.9295 40 1 -1.1324 -9.8726 -4.6277 41 1 1.3423 -2.8551 -3.0802 42 1 -0.3490 -3.4192 -3.0686 43 1 -0.6643 -2.6634 -0.7802 44 1 0.0979 -1.3181 -1.6651 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329770949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:23 Heat of formation + Delta-G solvation = -115.258304 kcal Electronic energy + Delta-G solvation = -24521.344444 eV Core-core repulsion = 20859.997067 eV Total energy + Delta-G solvation = -3661.347377 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.16423 -40.47079 -38.82040 -38.05911 -35.62747 -33.96049 -33.30643 -31.94912 -30.55115 -29.51885 -28.10128 -26.26697 -25.34567 -24.35639 -23.62923 -22.28494 -21.44199 -20.21835 -18.88358 -18.21186 -17.69337 -17.35525 -17.16373 -16.90534 -16.65576 -16.29347 -16.21328 -15.72958 -15.46607 -15.24651 -15.09469 -14.95998 -14.52349 -14.04316 -13.75411 -13.42448 -13.34374 -13.21235 -12.87083 -12.70624 -12.62991 -12.47982 -12.23010 -12.21224 -12.02723 -11.90509 -11.86810 -11.66269 -11.54169 -10.79392 -10.77970 -10.67861 -10.58804 -9.86143 -8.66540 -7.89348 -5.36924 1.47823 1.51620 1.55123 1.61178 1.73554 2.50852 2.73855 3.07346 3.25515 3.53006 3.58788 3.62632 3.81033 3.97289 4.10536 4.18669 4.21530 4.25418 4.26998 4.34334 4.36883 4.38989 4.49991 4.57102 4.63859 4.65733 4.73173 4.80639 4.81267 4.86426 4.92506 5.04639 5.07609 5.16606 5.22007 5.51340 5.60107 5.65821 5.83131 6.06812 6.35595 6.45313 7.10894 7.13516 7.78126 8.31545 9.16067 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.033132 B = 0.002687 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.889289 B =10419.389561 C =10958.176176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.045 4.045 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.296 1.296 7 C -0.264 4.264 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.132 3.868 11 C 0.107 3.893 12 N -0.600 5.600 13 C 0.506 3.494 14 O -0.579 6.579 15 C 0.052 3.948 16 O -0.393 6.393 17 C 0.065 3.935 18 C -0.121 4.121 19 H 0.079 0.921 20 C -0.141 4.141 21 C 0.037 3.963 22 O -0.404 6.404 23 C 0.052 3.948 24 C 0.094 3.906 25 C 0.160 3.840 26 H 0.252 0.748 27 H 0.008 0.992 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.001 0.999 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.618 -11.492 -14.273 19.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.223 1.223 7 C -0.394 4.394 8 H 0.086 0.914 9 N -0.333 5.333 10 C 0.005 3.995 11 C -0.017 4.017 12 N -0.334 5.334 13 C 0.295 3.705 14 O -0.459 6.459 15 C -0.027 4.027 16 O -0.312 6.312 17 C -0.011 4.011 18 C -0.140 4.140 19 H 0.097 0.903 20 C -0.178 4.178 21 C -0.039 4.039 22 O -0.324 6.324 23 C -0.025 4.025 24 C -0.030 4.030 25 C 0.034 3.966 26 H 0.062 0.938 27 H 0.026 0.974 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.019 0.981 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.386 -12.295 -13.988 20.035 hybrid contribution 0.246 1.398 0.581 1.534 sum -7.140 -10.897 -13.406 18.693 Atomic orbital electron populations 1.70157 1.06554 1.26048 1.55014 1.25764 0.96029 1.01369 1.00910 0.85213 0.78578 0.79821 0.76801 1.19331 1.21205 1.22332 1.19533 0.93121 0.85686 1.41032 0.91427 1.44279 1.36989 1.02009 1.50009 1.21352 0.98078 0.86277 0.93747 1.22005 0.88285 1.00282 0.91154 1.48095 1.32947 1.07012 1.45336 1.20904 0.84287 0.83037 0.82259 1.90645 1.67294 1.30804 1.57181 1.22272 0.94990 0.86153 0.99273 1.87963 1.50397 1.26087 1.66774 1.22828 0.88470 0.96411 0.93366 1.22499 0.95921 0.94943 1.00615 0.90250 1.22932 0.96410 1.02594 0.95897 1.23654 0.88883 0.94991 0.96417 1.89107 1.39203 1.36368 1.67719 1.23461 0.94073 0.92254 0.92708 1.22646 1.01135 0.82401 0.96814 1.21146 0.88024 0.98583 0.88857 0.93840 0.97436 0.90901 0.89893 0.90811 0.88334 0.87193 0.90954 0.90858 0.89498 0.88014 0.87668 0.91012 0.91551 0.90127 0.90632 0.87131 0.98075 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.78 11.20 21.65 0.24 -51.53 16 2 C -0.04 -2.37 4.90 84.86 0.42 -1.95 16 3 Si 0.97 42.47 29.59 68.60 2.03 44.50 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.26 -13.74 9.58 84.03 0.80 -12.93 16 8 H 0.07 3.46 7.89 -2.91 -0.02 3.43 16 9 N -0.61 -29.06 2.97 -697.34 -2.07 -31.13 16 10 C 0.13 5.47 6.67 86.41 0.58 6.04 16 11 C 0.11 3.82 6.59 86.41 0.57 4.39 16 12 N -0.60 -20.39 2.94 -817.18 -2.40 -22.80 16 13 C 0.51 17.08 7.77 87.66 0.68 17.76 16 14 O -0.58 -24.22 15.90 16.02 0.25 -23.96 16 15 C 0.05 1.25 4.76 71.24 0.34 1.58 16 16 O -0.39 -10.22 9.79 -129.94 -1.27 -11.49 16 17 C 0.07 1.09 5.08 71.98 0.37 1.46 16 18 C -0.12 -2.09 3.39 -9.78 -0.03 -2.12 16 19 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 20 C -0.14 -1.62 6.74 31.61 0.21 -1.40 16 21 C 0.04 0.48 7.63 72.48 0.55 1.04 16 22 O -0.40 -8.66 11.65 -148.98 -1.74 -10.39 16 23 C 0.05 1.04 7.10 72.49 0.51 1.56 16 24 C 0.09 2.95 6.53 86.56 0.57 3.52 16 25 C 0.16 6.94 5.53 86.56 0.48 7.42 16 26 H 0.25 13.53 8.31 -92.70 -0.77 12.76 16 27 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 28 H 0.07 2.88 7.94 -2.39 -0.02 2.86 16 29 H 0.08 2.98 6.99 -2.39 -0.02 2.96 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.10 2.02 7.75 -2.39 -0.02 2.00 16 32 H 0.11 1.91 7.89 -2.39 -0.02 1.89 16 33 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.07 0.93 7.96 -2.39 -0.02 0.92 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 0.75 7.73 -2.39 -0.02 0.73 16 37 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 1.24 7.75 -2.38 -0.02 1.23 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.11 2.56 5.91 -2.39 -0.01 2.55 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.08 3.76 5.98 -2.38 -0.01 3.74 16 Total: -1.00 -70.06 351.17 2.07 -67.99 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.98 Total: 12.46 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: 6.05 Total: 26.36 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -4.23 Total: -105.46 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -2.75 Total: -45.85 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -70.06 2.07 -67.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329770949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.266 kcal (2) G-P(sol) polarization free energy of solvation -70.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds