Wall clock time and date at job start Tue Mar 31 2020 04:21:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.46886 * 2 1
4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1
5 5 C 1.52999 * 109.47317 * 59.99960 * 4 3 2
6 6 O 1.42905 * 109.46728 * 59.99947 * 5 4 3
7 7 C 1.42903 * 113.99896 * 90.00451 * 6 5 4
8 8 C 1.50700 * 109.47360 * 179.97438 * 7 6 5
9 9 O 1.21286 * 119.99504 * 0.02562 * 8 7 6
10 10 N 1.34769 * 120.00292 * 179.97438 * 8 7 6
11 11 C 1.46495 * 120.00100 * 180.02562 * 10 8 7
12 12 C 1.50704 * 109.47114 * 180.02562 * 11 10 8
13 13 O 1.21290 * 119.99870 * 359.97438 * 12 11 10
14 14 N 1.34777 * 120.00005 * 180.02562 * 12 11 10
15 15 C 1.37097 * 120.00041 * 179.97438 * 14 12 11
16 16 H 1.08005 * 119.99803 * 359.97438 * 15 14 12
17 17 C 1.38948 * 119.99908 * 179.97438 * 15 14 12
18 18 N 1.31413 * 119.99900 * 179.97438 * 17 15 14
19 19 Si 1.86804 * 120.00244 * 0.02562 * 17 15 14
20 20 H 1.48500 * 109.47203 * 89.99733 * 19 17 15
21 21 H 1.48496 * 109.46896 * 209.99850 * 19 17 15
22 22 H 1.48497 * 109.46702 * 329.99888 * 19 17 15
23 23 C 1.53005 * 109.47159 * 300.00546 * 5 4 3
24 24 C 1.52997 * 109.47452 * 59.99536 * 23 5 4
25 25 H 1.09002 * 109.47508 * 59.99571 * 1 2 3
26 26 H 1.09000 * 109.47437 * 180.02562 * 1 2 3
27 27 H 1.09001 * 109.47109 * 299.99380 * 1 2 3
28 28 H 1.08992 * 109.47514 * 120.00434 * 2 1 3
29 29 H 1.09002 * 109.47398 * 300.00496 * 3 2 1
30 30 H 1.09001 * 109.47194 * 60.00677 * 3 2 1
31 31 H 1.08996 * 109.47853 * 180.02562 * 4 3 2
32 32 H 1.09002 * 109.47153 * 300.00319 * 4 3 2
33 33 H 1.09000 * 109.47486 * 180.02562 * 5 4 3
34 34 H 1.09002 * 109.46799 * 299.99649 * 7 6 5
35 35 H 1.09005 * 109.47176 * 59.99740 * 7 6 5
36 36 H 0.97003 * 120.00034 * 0.02562 * 10 8 7
37 37 H 1.09002 * 109.47062 * 299.99991 * 11 10 8
38 38 H 1.08997 * 109.47340 * 59.99971 * 11 10 8
39 39 H 0.96998 * 120.00229 * 359.97438 * 14 12 11
40 40 H 0.96998 * 120.00160 * 180.02562 * 18 17 15
41 41 H 1.09002 * 109.46935 * 299.99411 * 23 5 4
42 42 H 1.09001 * 109.46812 * 179.97438 * 23 5 4
43 43 H 1.08993 * 109.47194 * 179.97438 * 24 23 5
44 44 H 1.09002 * 109.46695 * 59.99734 * 24 23 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5699 1.4426 -0.0006
5 6 4.0795 0.7215 -1.2502
6 8 3.6026 1.3954 -2.4167
7 6 4.4745 2.4232 -2.8915
8 6 3.8764 3.0625 -4.1181
9 8 2.8083 2.6763 -4.5434
10 7 4.5279 4.0640 -4.7417
11 6 3.9461 4.6859 -5.9337
12 6 4.8658 5.7697 -6.4345
13 8 5.9047 6.0002 -5.8526
14 7 4.5333 6.4834 -7.5284
15 6 5.3697 7.4697 -7.9836
16 1 6.2948 7.6750 -7.4654
17 6 5.0271 8.2051 -9.1117
18 7 5.8286 9.1509 -9.5478
19 14 3.4267 7.8505 -10.0075
20 1 2.3431 8.6898 -9.4361
21 1 3.5871 8.1638 -11.4501
22 1 3.0779 6.4159 -9.8483
23 6 3.5694 -0.7210 -1.2503
24 6 2.0394 -0.7211 -1.2496
25 1 -0.3634 0.5139 -0.8899
26 1 -0.3634 -1.0276 0.0005
27 1 -0.3633 0.5137 0.8900
28 1 1.8934 -0.5138 0.8899
29 1 1.6765 1.9564 -0.8899
30 1 1.6767 1.9563 0.8900
31 1 3.9333 2.4702 -0.0002
32 1 3.9337 0.9286 0.8891
33 1 5.1695 0.7211 -1.2504
34 1 4.6042 3.1771 -2.1149
35 1 5.4429 1.9906 -3.1432
36 1 5.3820 4.3731 -4.4012
37 1 3.8168 3.9320 -6.7104
38 1 2.9777 5.1181 -5.6821
39 1 3.7023 6.2992 -7.9936
40 1 5.5893 9.6645 -10.3350
41 1 3.9331 -1.2350 -0.3605
42 1 3.9321 -1.2345 -2.1407
43 1 1.6761 -1.7487 -1.2501
44 1 1.6758 -0.2070 -2.1393
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000344190072.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:21:03
Heat of formation + Delta-G solvation = -140.181213 kcal
Electronic energy + Delta-G solvation = -23953.443038 eV
Core-core repulsion = 20291.014923 eV
Total energy + Delta-G solvation = -3662.428115 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.173 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.03266 -39.30124 -38.27328 -36.48941 -34.53929 -33.76907 -32.09472 -31.82764
-31.01772 -29.20877 -26.86469 -26.12038 -24.17054 -22.91910 -21.46784 -20.43783
-19.83859 -19.65700 -18.71130 -17.34314 -16.71001 -16.28310 -15.87242 -15.54385
-15.13304 -15.07285 -14.77627 -14.50551 -14.31584 -13.99387 -13.78355 -13.23648
-13.19751 -13.05145 -12.77719 -12.50107 -12.48621 -12.20174 -12.07311 -11.86193
-11.72913 -11.62911 -11.28665 -11.25010 -10.68764 -10.66006 -10.50423 -10.26773
-10.08651 -9.72389 -9.72149 -9.64434 -8.92834 -8.80853 -8.33080 -6.43049
-3.95820 2.70829 2.80187 2.98264 3.03073 3.11387 3.53166 3.89006
4.01783 4.42802 4.46226 4.52096 4.57491 4.80076 4.86830 4.90712
5.01226 5.04933 5.09194 5.12293 5.19283 5.29188 5.33936 5.43077
5.54333 5.61629 5.63482 5.64909 5.75627 5.76808 5.78739 5.80246
5.99001 6.05411 6.07869 6.11688 6.36512 6.50581 6.95182 7.41656
7.69057 7.97677 8.33018 8.43491 8.79064 9.27220 9.60340 10.69010
Molecular weight = 298.17amu
Principal moments of inertia in cm(-1)
A = 0.032240 B = 0.002422 C = 0.002339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 868.267727 B =11558.115447 C =11969.216984
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.090 4.090
3 C -0.111 4.111
4 C -0.141 4.141
5 C 0.086 3.914
6 O -0.349 6.349
7 C 0.045 3.955
8 C 0.513 3.487
9 O -0.529 6.529
10 N -0.708 5.708
11 C 0.109 3.891
12 C 0.438 3.562
13 O -0.580 6.580
14 N -0.576 5.576
15 C -0.311 4.311
16 H 0.122 0.878
17 C 0.045 3.955
18 N -0.874 5.874
19 Si 0.879 3.121
20 H -0.268 1.268
21 H -0.274 1.274
22 H -0.267 1.267
23 C -0.113 4.113
24 C -0.113 4.113
25 H 0.057 0.943
26 H 0.052 0.948
27 H 0.051 0.949
28 H 0.064 0.936
29 H 0.073 0.927
30 H 0.057 0.943
31 H 0.064 0.936
32 H 0.070 0.930
33 H 0.061 0.939
34 H 0.079 0.921
35 H 0.080 0.920
36 H 0.412 0.588
37 H 0.085 0.915
38 H 0.086 0.914
39 H 0.375 0.625
40 H 0.276 0.724
41 H 0.073 0.927
42 H 0.069 0.931
43 H 0.058 0.942
44 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.844 -18.256 17.910 26.475
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.108 4.108
3 C -0.148 4.148
4 C -0.179 4.179
5 C 0.029 3.971
6 O -0.268 6.268
7 C -0.035 4.035
8 C 0.298 3.702
9 O -0.404 6.404
10 N -0.364 5.364
11 C -0.019 4.019
12 C 0.224 3.776
13 O -0.464 6.464
14 N -0.213 5.213
15 C -0.439 4.439
16 H 0.139 0.861
17 C -0.159 4.159
18 N -0.512 5.512
19 Si 0.705 3.295
20 H -0.194 1.194
21 H -0.200 1.200
22 H -0.192 1.192
23 C -0.151 4.151
24 C -0.150 4.150
25 H 0.076 0.924
26 H 0.071 0.929
27 H 0.070 0.930
28 H 0.082 0.918
29 H 0.092 0.908
30 H 0.076 0.924
31 H 0.082 0.918
32 H 0.088 0.912
33 H 0.079 0.921
34 H 0.097 0.903
35 H 0.098 0.902
36 H 0.250 0.750
37 H 0.103 0.897
38 H 0.104 0.896
39 H 0.208 0.792
40 H 0.086 0.914
41 H 0.091 0.909
42 H 0.087 0.913
43 H 0.076 0.924
44 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -7.047 -18.233 17.720 26.383
hybrid contribution -0.471 0.206 -0.599 0.789
sum -7.518 -18.027 17.120 25.973
Atomic orbital electron populations
1.21824 0.95387 1.01439 1.01844 1.21113 0.95442 0.96200 0.98083
1.21495 0.94622 0.96462 1.02270 1.22030 0.97257 1.00876 0.97755
1.22167 0.97282 0.92556 0.85142 1.88057 1.45195 1.49463 1.44043
1.22201 0.93935 0.92228 0.95169 1.20163 0.85384 0.79946 0.84736
1.90713 1.21516 1.62257 1.65962 1.45564 1.25610 1.36056 1.29192
1.20965 0.96922 0.95832 0.88196 1.19622 0.88470 0.85712 0.83830
1.90535 1.26509 1.70511 1.58862 1.42127 1.21156 1.32755 1.25274
1.19440 1.04238 1.09574 1.10659 0.86066 1.25073 0.98095 0.95937
0.96802 1.69616 1.36446 1.20846 1.24329 0.86667 0.83420 0.78922
0.80473 1.19366 1.19954 1.19205 1.21608 0.96998 0.94218 1.02259
1.21523 0.94699 1.00010 0.98785 0.92420 0.92931 0.92964 0.91792
0.90816 0.92424 0.91773 0.91183 0.92057 0.90315 0.90246 0.75006
0.89654 0.89644 0.79208 0.91353 0.90881 0.91255 0.92366 0.90567
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16
2 C -0.09 -0.73 2.72 -90.62 -0.25 -0.98 16
3 C -0.11 -0.99 5.06 -26.73 -0.14 -1.12 16
4 C -0.14 -1.13 5.63 -26.73 -0.15 -1.28 16
5 C 0.09 0.76 2.92 -26.73 -0.08 0.69 16
6 O -0.35 -4.24 8.17 -55.14 -0.45 -4.69 16
7 C 0.04 0.50 6.23 36.01 0.22 0.72 16
8 C 0.51 7.75 7.91 -10.99 -0.09 7.67 16
9 O -0.53 -9.93 16.50 -14.36 -0.24 -10.17 16
10 N -0.71 -10.95 5.53 -61.47 -0.34 -11.29 16
11 C 0.11 1.86 6.15 -5.19 -0.03 1.83 16
12 C 0.44 9.50 7.85 -10.98 -0.09 9.41 16
13 O -0.58 -14.40 15.24 5.55 0.08 -14.32 16
14 N -0.58 -13.29 5.09 -10.96 -0.06 -13.34 16
15 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16
16 H 0.12 3.77 7.39 -52.48 -0.39 3.39 16
17 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16
18 N -0.87 -24.81 13.96 55.50 0.77 -24.03 16
19 Si 0.88 18.91 27.74 -169.99 -4.71 14.20 16
20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16
21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16
22 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16
23 C -0.11 -0.92 5.66 -26.73 -0.15 -1.07 16
24 C -0.11 -1.00 5.06 -26.73 -0.14 -1.14 16
25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
29 H 0.07 0.83 7.68 -51.93 -0.40 0.43 16
30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
31 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16
32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
33 H 0.06 0.45 7.79 -51.93 -0.40 0.05 16
34 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16
35 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16
36 H 0.41 6.11 7.44 -40.82 -0.30 5.81 16
37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16
38 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16
39 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16
40 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16
41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
44 H 0.08 0.87 7.68 -51.93 -0.40 0.47 16
LS Contribution 358.43 15.07 5.40 5.40
Total: -1.00 -32.67 358.43 -7.51 -40.17
By element:
Atomic # 1 Polarization: 18.89 SS G_CDS: -7.18 Total: 11.71 kcal
Atomic # 6 Polarization: 7.14 SS G_CDS: -0.78 Total: 6.36 kcal
Atomic # 7 Polarization: -49.04 SS G_CDS: 0.38 Total: -48.67 kcal
Atomic # 8 Polarization: -28.57 SS G_CDS: -0.60 Total: -29.18 kcal
Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.20 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -32.67 -7.51 -40.17 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344190072.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -100.008 kcal
(2) G-P(sol) polarization free energy of solvation -32.667 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.675 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.181 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds