Wall clock time and date at job start Tue Mar 31 2020 04:21:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.46886 * 2 1
4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1
5 5 C 1.52999 * 109.47317 * 59.99960 * 4 3 2
6 6 O 1.42905 * 109.46728 * 59.99947 * 5 4 3
7 7 C 1.42903 * 113.99896 * 90.00451 * 6 5 4
8 8 C 1.50700 * 109.47360 * 179.97438 * 7 6 5
9 9 O 1.21286 * 119.99504 * 0.02562 * 8 7 6
10 10 N 1.34769 * 120.00292 * 179.97438 * 8 7 6
11 11 C 1.46495 * 120.00100 * 180.02562 * 10 8 7
12 12 C 1.50704 * 109.47114 * 180.02562 * 11 10 8
13 13 O 1.21290 * 119.99870 * 359.97438 * 12 11 10
14 14 N 1.34777 * 120.00005 * 180.02562 * 12 11 10
15 15 C 1.37097 * 120.00041 * 179.97438 * 14 12 11
16 16 H 1.08005 * 119.99803 * 359.97438 * 15 14 12
17 17 C 1.38948 * 119.99908 * 179.97438 * 15 14 12
18 18 N 1.31413 * 119.99900 * 179.97438 * 17 15 14
19 19 Si 1.86804 * 120.00244 * 0.02562 * 17 15 14
20 20 H 1.48500 * 109.47203 * 89.99733 * 19 17 15
21 21 H 1.48496 * 109.46896 * 209.99850 * 19 17 15
22 22 H 1.48497 * 109.46702 * 329.99888 * 19 17 15
23 23 C 1.53005 * 109.47159 * 300.00546 * 5 4 3
24 24 C 1.52997 * 109.47452 * 59.99536 * 23 5 4
25 25 H 1.09002 * 109.47508 * 59.99571 * 1 2 3
26 26 H 1.09000 * 109.47437 * 180.02562 * 1 2 3
27 27 H 1.09001 * 109.47109 * 299.99380 * 1 2 3
28 28 H 1.08992 * 109.47514 * 120.00434 * 2 1 3
29 29 H 1.09002 * 109.47398 * 300.00496 * 3 2 1
30 30 H 1.09001 * 109.47194 * 60.00677 * 3 2 1
31 31 H 1.08996 * 109.47853 * 180.02562 * 4 3 2
32 32 H 1.09002 * 109.47153 * 300.00319 * 4 3 2
33 33 H 1.09000 * 109.47486 * 180.02562 * 5 4 3
34 34 H 1.09002 * 109.46799 * 299.99649 * 7 6 5
35 35 H 1.09005 * 109.47176 * 59.99740 * 7 6 5
36 36 H 0.97003 * 120.00034 * 0.02562 * 10 8 7
37 37 H 1.09002 * 109.47062 * 299.99991 * 11 10 8
38 38 H 1.08997 * 109.47340 * 59.99971 * 11 10 8
39 39 H 0.96998 * 120.00229 * 359.97438 * 14 12 11
40 40 H 0.96998 * 120.00160 * 180.02562 * 18 17 15
41 41 H 1.09002 * 109.46935 * 299.99411 * 23 5 4
42 42 H 1.09001 * 109.46812 * 179.97438 * 23 5 4
43 43 H 1.08993 * 109.47194 * 179.97438 * 24 23 5
44 44 H 1.09002 * 109.46695 * 59.99734 * 24 23 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5699 1.4426 -0.0006
5 6 4.0795 0.7215 -1.2502
6 8 3.6026 1.3954 -2.4167
7 6 4.4745 2.4232 -2.8915
8 6 3.8764 3.0625 -4.1181
9 8 2.8083 2.6763 -4.5434
10 7 4.5279 4.0640 -4.7417
11 6 3.9461 4.6859 -5.9337
12 6 4.8658 5.7697 -6.4345
13 8 5.9047 6.0002 -5.8526
14 7 4.5333 6.4834 -7.5284
15 6 5.3697 7.4697 -7.9836
16 1 6.2948 7.6750 -7.4654
17 6 5.0271 8.2051 -9.1117
18 7 5.8286 9.1509 -9.5478
19 14 3.4267 7.8505 -10.0075
20 1 2.3431 8.6898 -9.4361
21 1 3.5871 8.1638 -11.4501
22 1 3.0779 6.4159 -9.8483
23 6 3.5694 -0.7210 -1.2503
24 6 2.0394 -0.7211 -1.2496
25 1 -0.3634 0.5139 -0.8899
26 1 -0.3634 -1.0276 0.0005
27 1 -0.3633 0.5137 0.8900
28 1 1.8934 -0.5138 0.8899
29 1 1.6765 1.9564 -0.8899
30 1 1.6767 1.9563 0.8900
31 1 3.9333 2.4702 -0.0002
32 1 3.9337 0.9286 0.8891
33 1 5.1695 0.7211 -1.2504
34 1 4.6042 3.1771 -2.1149
35 1 5.4429 1.9906 -3.1432
36 1 5.3820 4.3731 -4.4012
37 1 3.8168 3.9320 -6.7104
38 1 2.9777 5.1181 -5.6821
39 1 3.7023 6.2992 -7.9936
40 1 5.5893 9.6645 -10.3350
41 1 3.9331 -1.2350 -0.3605
42 1 3.9321 -1.2345 -2.1407
43 1 1.6761 -1.7487 -1.2501
44 1 1.6758 -0.2070 -2.1393
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000344190072.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:21:03
Heat of formation + Delta-G solvation = -163.213115 kcal
Electronic energy + Delta-G solvation = -23954.441777 eV
Core-core repulsion = 20291.014923 eV
Total energy + Delta-G solvation = -3663.426853 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 298.173 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-41.15739 -40.41873 -39.77701 -37.30007 -36.29666 -35.33447 -33.84867 -32.76748
-31.65899 -30.46353 -28.15011 -26.88868 -25.91136 -23.57102 -22.11190 -21.66349
-21.49567 -20.59674 -20.46313 -18.67582 -17.70569 -17.31249 -17.26300 -16.79425
-16.46013 -16.40497 -16.15865 -15.48349 -15.22950 -15.10447 -14.82929 -14.74363
-14.32935 -14.10740 -13.98207 -13.85556 -13.65038 -13.45233 -13.10602 -12.97011
-12.55742 -12.45763 -12.35696 -12.30610 -12.01399 -11.96697 -11.59386 -11.37669
-11.19937 -10.92960 -10.89021 -10.67565 -10.38897 -10.34336 -10.19745 -8.46614
-6.08624 1.30280 1.33192 1.42920 1.53436 1.71686 1.78072 2.19415
2.77639 3.07653 3.09603 3.69373 3.80485 3.87538 3.92914 3.99814
4.20655 4.22601 4.26967 4.31745 4.38826 4.40952 4.43772 4.55770
4.67184 4.71519 4.78732 4.91996 4.99108 5.01777 5.16025 5.18161
5.20512 5.33123 5.36873 5.41958 5.46808 5.47248 5.68161 5.86940
6.19298 6.47020 6.51120 6.76899 7.13478 7.28439 7.76110 8.69685
Molecular weight = 298.17amu
Principal moments of inertia in cm(-1)
A = 0.032240 B = 0.002422 C = 0.002339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 868.267727 B =11558.115447 C =11969.216984
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.088 4.088
3 C -0.111 4.111
4 C -0.139 4.139
5 C 0.079 3.921
6 O -0.377 6.377
7 C 0.049 3.951
8 C 0.513 3.487
9 O -0.568 6.568
10 N -0.707 5.707
11 C 0.119 3.881
12 C 0.446 3.554
13 O -0.613 6.613
14 N -0.578 5.578
15 C -0.331 4.331
16 H 0.065 0.935
17 C -0.008 4.008
18 N -0.925 5.925
19 Si 0.958 3.042
20 H -0.257 1.257
21 H -0.273 1.273
22 H -0.234 1.234
23 C -0.113 4.113
24 C -0.112 4.112
25 H 0.039 0.961
26 H 0.060 0.940
27 H 0.059 0.941
28 H 0.082 0.918
29 H 0.041 0.959
30 H 0.064 0.936
31 H 0.064 0.936
32 H 0.091 0.909
33 H 0.082 0.918
34 H 0.102 0.898
35 H 0.106 0.894
36 H 0.416 0.584
37 H 0.102 0.898
38 H 0.103 0.897
39 H 0.392 0.608
40 H 0.281 0.719
41 H 0.097 0.903
42 H 0.063 0.937
43 H 0.066 0.934
44 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.107 -20.258 19.061 28.973
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.106 4.106
3 C -0.149 4.149
4 C -0.177 4.177
5 C 0.022 3.978
6 O -0.296 6.296
7 C -0.031 4.031
8 C 0.301 3.699
9 O -0.447 6.447
10 N -0.364 5.364
11 C -0.009 4.009
12 C 0.233 3.767
13 O -0.499 6.499
14 N -0.218 5.218
15 C -0.460 4.460
16 H 0.083 0.917
17 C -0.208 4.208
18 N -0.565 5.565
19 Si 0.778 3.222
20 H -0.181 1.181
21 H -0.198 1.198
22 H -0.157 1.157
23 C -0.151 4.151
24 C -0.149 4.149
25 H 0.058 0.942
26 H 0.079 0.921
27 H 0.078 0.922
28 H 0.100 0.900
29 H 0.060 0.940
30 H 0.083 0.917
31 H 0.083 0.917
32 H 0.110 0.890
33 H 0.100 0.900
34 H 0.120 0.880
35 H 0.124 0.876
36 H 0.254 0.746
37 H 0.120 0.880
38 H 0.121 0.879
39 H 0.228 0.772
40 H 0.091 0.909
41 H 0.116 0.884
42 H 0.082 0.918
43 H 0.085 0.915
44 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -8.300 -20.254 18.899 28.918
hybrid contribution 0.006 0.809 -0.851 1.174
sum -8.294 -19.444 18.048 27.796
Atomic orbital electron populations
1.21828 0.95512 1.01836 1.01328 1.21118 0.95405 0.95768 0.98309
1.21472 0.95648 0.96710 1.01023 1.22043 0.96260 1.01172 0.98229
1.22416 0.98516 0.92565 0.84277 1.88044 1.46222 1.49874 1.45486
1.22248 0.94216 0.92821 0.93796 1.20867 0.84670 0.79097 0.85309
1.90695 1.23332 1.63393 1.67283 1.45594 1.25780 1.36224 1.28763
1.20861 0.96086 0.94578 0.89359 1.20462 0.88224 0.85444 0.82524
1.90524 1.28312 1.71444 1.59616 1.41945 1.21413 1.32393 1.26078
1.19032 1.03619 1.11893 1.11462 0.91713 1.26060 1.02556 0.94998
0.97183 1.69775 1.39188 1.22245 1.25243 0.85452 0.77558 0.80775
0.78392 1.18118 1.19800 1.15695 1.21656 0.96130 0.94105 1.03162
1.21486 0.95618 1.00099 0.97709 0.94206 0.92086 0.92199 0.89982
0.93973 0.91709 0.91742 0.89025 0.90023 0.88036 0.87604 0.74555
0.87964 0.87923 0.77248 0.90901 0.88421 0.91828 0.91497 0.93945
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.20 9.19 71.98 0.66 -1.54 16
2 C -0.09 -1.29 2.72 -10.79 -0.03 -1.32 16
3 C -0.11 -1.85 5.06 30.59 0.15 -1.69 16
4 C -0.14 -1.89 5.63 30.59 0.17 -1.72 16
5 C 0.08 1.22 2.92 30.60 0.09 1.31 16
6 O -0.38 -8.69 8.17 -129.94 -1.06 -9.75 16
7 C 0.05 0.98 6.23 71.24 0.44 1.43 16
8 C 0.51 14.81 7.91 87.66 0.69 15.51 16
9 O -0.57 -20.96 16.50 15.99 0.26 -20.69 16
10 N -0.71 -20.84 5.53 -466.80 -2.58 -23.42 16
11 C 0.12 3.86 6.15 85.64 0.53 4.39 16
12 C 0.45 19.17 7.85 87.66 0.69 19.86 16
13 O -0.61 -30.94 15.24 -3.06 -0.05 -30.99 16
14 N -0.58 -26.44 5.09 -306.98 -1.56 -28.00 16
15 C -0.33 -18.67 10.16 84.04 0.85 -17.82 16
16 H 0.06 4.30 7.39 -2.91 -0.02 4.28 16
17 C -0.01 -0.42 5.50 84.93 0.47 0.04 16
18 N -0.92 -54.09 13.96 21.66 0.30 -53.79 16
19 Si 0.96 38.06 27.74 68.60 1.90 39.96 16
20 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16
21 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16
22 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16
23 C -0.11 -1.59 5.66 30.60 0.17 -1.42 16
24 C -0.11 -1.88 5.06 30.59 0.15 -1.72 16
25 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16
26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
27 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16
28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
29 H 0.04 0.96 7.68 -2.39 -0.02 0.95 16
30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
31 H 0.06 0.87 7.87 -2.39 -0.02 0.85 16
32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16
33 H 0.08 0.92 7.79 -2.39 -0.02 0.90 16
34 H 0.10 1.59 7.87 -2.39 -0.02 1.57 16
35 H 0.11 1.59 8.09 -2.38 -0.02 1.57 16
36 H 0.42 11.83 7.44 -92.71 -0.69 11.14 16
37 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16
38 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16
39 H 0.39 15.08 5.76 -92.71 -0.53 14.55 16
40 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16
41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16
42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16
44 H 0.04 1.00 7.68 -2.39 -0.02 0.98 16
Total: -1.00 -74.90 358.43 1.99 -72.91
By element:
Atomic # 1 Polarization: 38.76 SS G_CDS: -0.28 Total: 38.48 kcal
Atomic # 6 Polarization: 10.24 SS G_CDS: 5.05 Total: 15.29 kcal
Atomic # 7 Polarization: -101.37 SS G_CDS: -3.84 Total: -105.21 kcal
Atomic # 8 Polarization: -60.58 SS G_CDS: -0.84 Total: -61.43 kcal
Atomic # 14 Polarization: 38.06 SS G_CDS: 1.90 Total: 39.96 kcal
Total: -74.90 1.99 -72.91 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344190072.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.304 kcal
(2) G-P(sol) polarization free energy of solvation -74.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.201 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.909 kcal
(6) G-S(sol) free energy of system = (1) + (5) -163.213 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds