Wall clock time and date at job start Tue Mar 31 2020 04:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99929 * 2 1 4 4 H 1.48496 * 109.47014 * 264.63298 * 3 2 1 5 5 H 1.48501 * 109.46966 * 24.63237 * 3 2 1 6 6 H 1.48504 * 109.47126 * 144.63277 * 3 2 1 7 7 C 1.38814 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99881 * 34.61661 * 7 2 1 9 9 N 1.36939 * 119.99995 * 214.61763 * 7 2 1 10 10 C 1.46955 * 120.65485 * 41.47221 * 9 7 2 11 11 C 1.53190 * 108.89181 * 126.46052 * 10 9 7 12 12 C 1.53037 * 109.31106 * 54.55564 * 11 10 9 13 13 C 1.53042 * 109.53902 * 298.63306 * 12 11 10 14 14 C 1.46928 * 120.62955 * 221.28086 * 9 7 2 15 15 H 1.09004 * 109.58470 * 113.67836 * 14 9 7 16 16 C 1.53007 * 109.58661 * 353.39953 * 14 9 7 17 17 O 1.45209 * 109.46962 * 65.28428 * 16 14 9 18 18 C 1.34633 * 116.99933 * 180.02562 * 17 16 14 19 19 O 1.21514 * 120.00142 * 359.97438 * 18 17 16 20 20 N 1.34768 * 120.00054 * 179.97438 * 18 17 16 21 21 C 1.46501 * 120.00110 * 179.97438 * 20 18 17 22 22 H 1.08997 * 110.54424 * 323.84126 * 21 20 18 23 23 C 1.54818 * 110.48972 * 201.22179 * 21 20 18 24 24 C 1.54998 * 102.08963 * 262.20669 * 23 21 20 25 25 O 1.44380 * 103.49174 * 322.97419 * 24 23 21 26 26 C 1.43744 * 106.97622 * 40.06421 * 25 24 23 27 27 H 0.96993 * 120.00020 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.59524 * 6.59326 * 10 9 7 29 29 H 1.09006 * 109.58188 * 246.31457 * 10 9 7 30 30 H 1.08996 * 109.49813 * 294.60480 * 11 10 9 31 31 H 1.09004 * 109.52391 * 174.52286 * 11 10 9 32 32 H 1.09000 * 109.46290 * 178.61645 * 12 11 10 33 33 H 1.08995 * 109.46377 * 58.65499 * 12 11 10 34 34 H 1.08996 * 109.49884 * 301.41746 * 13 12 11 35 35 H 1.08997 * 109.52469 * 181.33225 * 13 12 11 36 36 H 1.08997 * 109.47329 * 305.28516 * 16 14 9 37 37 H 1.08997 * 109.47044 * 185.27988 * 16 14 9 38 38 H 0.97003 * 120.00315 * 0.02562 * 20 18 17 39 39 H 1.08996 * 110.90572 * 20.40019 * 23 21 20 40 40 H 1.09003 * 110.90613 * 144.00954 * 23 21 20 41 41 H 1.09000 * 110.61771 * 81.47915 * 24 23 21 42 42 H 1.09004 * 110.61511 * 204.31990 * 24 23 21 43 43 H 1.08997 * 109.88016 * 214.06377 * 26 25 24 44 44 H 1.08994 * 109.87933 * 92.90571 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6111 1.9810 -1.3939 5 1 1.3955 2.6828 0.5836 6 1 3.4865 1.4756 0.8104 7 6 2.0103 -1.2021 0.0005 8 1 1.6137 -2.0549 -0.5304 9 7 3.1979 -1.3067 0.6743 10 6 3.3631 -0.6961 2.0007 11 6 3.8593 -1.7643 2.9802 12 6 5.1297 -2.4108 2.4232 13 6 4.8156 -3.0887 1.0875 14 6 4.3303 -2.0354 0.0866 15 1 5.1395 -1.3385 -0.1318 16 6 3.8830 -2.7230 -1.2050 17 8 3.5291 -1.7175 -2.1911 18 6 3.1111 -2.1597 -3.3920 19 8 3.0442 -3.3532 -3.6104 20 7 2.7667 -1.2787 -4.3520 21 6 2.3124 -1.7599 -5.6590 22 1 2.8575 -2.6589 -5.9463 23 6 2.4828 -0.6568 -6.7318 24 6 1.0582 -0.0502 -6.8030 25 8 0.1956 -1.1963 -6.6386 26 6 0.7959 -2.0330 -5.6358 27 1 -0.4850 0.8400 -0.0004 28 1 2.4064 -0.3021 2.3435 29 1 4.0915 0.1128 1.9424 30 1 3.0900 -2.5256 3.1087 31 1 4.0782 -1.3023 3.9429 32 1 5.4987 -3.1542 3.1298 33 1 5.8904 -1.6450 2.2717 34 1 4.0372 -3.8375 1.2338 35 1 5.7150 -3.5692 0.7026 36 1 3.0167 -3.3521 -1.0006 37 1 4.6964 -3.3384 -1.5895 38 1 2.8204 -0.3260 -4.1778 39 1 3.2080 0.0904 -6.4095 40 1 2.7704 -1.0879 -7.6907 41 1 0.9047 0.6648 -5.9948 42 1 0.8908 0.4236 -7.7702 43 1 0.6046 -3.0814 -5.8647 44 1 0.3897 -1.7857 -4.6551 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375808070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:03 Heat of formation + Delta-G solvation = -102.947404 kcal Electronic energy + Delta-G solvation = -25793.138457 eV Core-core repulsion = 22132.324921 eV Total energy + Delta-G solvation = -3660.813536 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23958 -39.12278 -37.91331 -35.85866 -34.38319 -33.03772 -31.64613 -30.75935 -30.62740 -28.66088 -26.26096 -24.73992 -22.99360 -22.40088 -21.96455 -20.77684 -20.47437 -19.39481 -18.27320 -16.93247 -16.50729 -16.20680 -16.09444 -15.54378 -15.20512 -14.92481 -14.52565 -14.24527 -13.85485 -13.59245 -13.28162 -13.15013 -13.00760 -12.54526 -12.37480 -12.09344 -11.91891 -11.77008 -11.53269 -11.46362 -11.38067 -11.22924 -10.73376 -10.61075 -10.48162 -10.20592 -10.13774 -9.88376 -9.82709 -9.71534 -9.66082 -9.47450 -9.01739 -8.31466 -6.69035 -6.04361 -3.34799 2.59661 3.31440 3.40960 3.51104 3.57249 3.90312 4.35769 4.56447 4.61192 4.74252 4.86699 4.87519 5.08367 5.25639 5.26138 5.39015 5.45327 5.54036 5.55018 5.58785 5.74250 5.81626 5.82921 5.89295 5.90987 5.97314 6.04202 6.18771 6.22861 6.41277 6.45810 6.49128 6.51868 6.61684 6.74855 6.82873 6.90756 7.02047 7.12161 7.72520 8.05119 8.40672 8.82139 9.00825 9.73807 10.21098 11.11076 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.005096 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.932264 B = 5493.303444 C = 6490.762477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.052 3.948 3 Si 0.845 3.155 4 H -0.290 1.290 5 H -0.301 1.301 6 H -0.262 1.262 7 C -0.258 4.258 8 H 0.071 0.929 9 N -0.593 5.593 10 C 0.145 3.855 11 C -0.139 4.139 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.167 3.833 15 H 0.037 0.963 16 C 0.107 3.893 17 O -0.331 6.331 18 C 0.651 3.349 19 O -0.587 6.587 20 N -0.708 5.708 21 C 0.133 3.867 22 H 0.105 0.895 23 C -0.162 4.162 24 C 0.043 3.957 25 O -0.377 6.377 26 C 0.032 3.968 27 H 0.262 0.738 28 H 0.066 0.934 29 H 0.023 0.977 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.407 0.593 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.479 -1.330 -7.505 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.150 4.150 3 Si 0.673 3.327 4 H -0.217 1.217 5 H -0.228 1.228 6 H -0.187 1.187 7 C -0.386 4.386 8 H 0.089 0.911 9 N -0.318 5.318 10 C 0.020 3.980 11 C -0.178 4.178 12 C -0.144 4.144 13 C -0.166 4.166 14 C 0.061 3.939 15 H 0.055 0.945 16 C 0.032 3.968 17 O -0.243 6.243 18 C 0.405 3.595 19 O -0.478 6.478 20 N -0.368 5.368 21 C 0.029 3.971 22 H 0.123 0.877 23 C -0.200 4.200 24 C -0.033 4.033 25 O -0.295 6.295 26 C -0.046 4.046 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.243 0.757 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.094 -1.905 -7.641 11.293 hybrid contribution 0.611 1.474 0.161 1.604 sum 8.705 -0.431 -7.479 11.485 Atomic orbital electron populations 1.70079 1.06395 1.26856 1.48745 1.25537 0.94653 0.97431 0.97376 0.87336 0.81494 0.85583 0.78305 1.21711 1.22823 1.18682 1.18428 0.94264 0.95361 1.30574 0.91121 1.44312 1.10065 1.63033 1.14396 1.21281 0.99250 0.92907 0.84608 1.22062 0.97278 1.00181 0.98249 1.21347 0.97838 0.99073 0.96187 1.21901 1.00209 0.98480 0.96030 1.20733 0.91336 0.92847 0.89002 0.94548 1.22916 0.99558 0.88801 0.85530 1.86462 1.77468 1.39963 1.20379 1.18225 0.76140 0.84114 0.80974 1.90926 1.59909 1.14984 1.81971 1.44632 1.70803 1.09597 1.11817 1.22171 0.95349 0.98382 0.81240 0.87691 1.23445 0.98880 0.98379 0.99335 1.23592 0.87986 0.89556 1.02203 1.88883 1.47440 1.33863 1.59360 1.23788 0.91705 0.95958 0.93150 0.92854 0.91520 0.95900 0.91934 0.93085 0.93060 0.92738 0.91600 0.92636 0.90690 0.92542 0.75725 0.89184 0.88860 0.91784 0.88742 0.88858 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.12 13.97 55.49 0.78 -25.34 16 2 C 0.05 1.45 4.83 -17.43 -0.08 1.37 16 3 Si 0.85 21.15 27.40 -169.99 -4.66 16.49 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.26 -6.32 5.23 56.52 0.30 -6.03 16 7 C -0.26 -6.90 7.59 -15.06 -0.11 -7.01 16 8 H 0.07 2.09 6.63 -52.49 -0.35 1.74 16 9 N -0.59 -13.58 2.47 -164.74 -0.41 -13.99 16 10 C 0.14 3.06 4.59 -3.70 -0.02 3.05 16 11 C -0.14 -2.38 6.08 -26.61 -0.16 -2.54 16 12 C -0.11 -1.62 5.88 -26.69 -0.16 -1.77 16 13 C -0.13 -2.03 5.37 -26.61 -0.14 -2.17 16 14 C 0.17 3.24 3.19 -67.59 -0.22 3.02 16 15 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 16 C 0.11 2.09 4.19 37.16 0.16 2.25 16 17 O -0.33 -6.97 8.75 -40.30 -0.35 -7.32 16 18 C 0.65 12.76 8.74 54.05 0.47 13.23 16 19 O -0.59 -12.48 15.85 -19.28 -0.31 -12.79 16 20 N -0.71 -11.23 5.02 -57.23 -0.29 -11.52 16 21 C 0.13 1.76 3.34 -66.39 -0.22 1.54 16 22 H 0.11 1.39 7.67 -51.93 -0.40 0.99 16 23 C -0.16 -1.57 6.78 -24.72 -0.17 -1.74 16 24 C 0.04 0.47 7.72 38.21 0.29 0.77 16 25 O -0.38 -5.41 11.52 -35.23 -0.41 -5.81 16 26 C 0.03 0.47 7.50 37.74 0.28 0.75 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.07 1.54 7.03 -51.93 -0.37 1.17 16 29 H 0.02 0.49 6.69 -51.93 -0.35 0.14 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.61 7.09 -51.93 -0.37 1.24 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.41 6.05 8.64 -40.82 -0.35 5.70 16 39 H 0.09 0.77 7.96 -51.93 -0.41 0.35 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -32.00 345.88 -7.82 -39.82 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.32 Total: 4.50 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -0.08 Total: 10.74 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.08 Total: -50.85 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -1.06 Total: -25.92 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.66 Total: 16.49 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.00 -7.82 -39.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375808070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.128 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds