Wall clock time and date at job start Tue Mar 31 2020 04:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99929 * 2 1 4 4 H 1.48496 * 109.47014 * 264.63298 * 3 2 1 5 5 H 1.48501 * 109.46966 * 24.63237 * 3 2 1 6 6 H 1.48504 * 109.47126 * 144.63277 * 3 2 1 7 7 C 1.38814 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99881 * 34.61661 * 7 2 1 9 9 N 1.36939 * 119.99995 * 214.61763 * 7 2 1 10 10 C 1.46955 * 120.65485 * 41.47221 * 9 7 2 11 11 C 1.53190 * 108.89181 * 126.46052 * 10 9 7 12 12 C 1.53037 * 109.31106 * 54.55564 * 11 10 9 13 13 C 1.53042 * 109.53902 * 298.63306 * 12 11 10 14 14 C 1.46928 * 120.62955 * 221.28086 * 9 7 2 15 15 H 1.09004 * 109.58470 * 113.67836 * 14 9 7 16 16 C 1.53007 * 109.58661 * 353.39953 * 14 9 7 17 17 O 1.45209 * 109.46962 * 65.28428 * 16 14 9 18 18 C 1.34633 * 116.99933 * 180.02562 * 17 16 14 19 19 O 1.21514 * 120.00142 * 359.97438 * 18 17 16 20 20 N 1.34768 * 120.00054 * 179.97438 * 18 17 16 21 21 C 1.46501 * 120.00110 * 179.97438 * 20 18 17 22 22 H 1.08997 * 110.54424 * 323.84126 * 21 20 18 23 23 C 1.54818 * 110.48972 * 201.22179 * 21 20 18 24 24 C 1.54998 * 102.08963 * 262.20669 * 23 21 20 25 25 O 1.44380 * 103.49174 * 322.97419 * 24 23 21 26 26 C 1.43744 * 106.97622 * 40.06421 * 25 24 23 27 27 H 0.96993 * 120.00020 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.59524 * 6.59326 * 10 9 7 29 29 H 1.09006 * 109.58188 * 246.31457 * 10 9 7 30 30 H 1.08996 * 109.49813 * 294.60480 * 11 10 9 31 31 H 1.09004 * 109.52391 * 174.52286 * 11 10 9 32 32 H 1.09000 * 109.46290 * 178.61645 * 12 11 10 33 33 H 1.08995 * 109.46377 * 58.65499 * 12 11 10 34 34 H 1.08996 * 109.49884 * 301.41746 * 13 12 11 35 35 H 1.08997 * 109.52469 * 181.33225 * 13 12 11 36 36 H 1.08997 * 109.47329 * 305.28516 * 16 14 9 37 37 H 1.08997 * 109.47044 * 185.27988 * 16 14 9 38 38 H 0.97003 * 120.00315 * 0.02562 * 20 18 17 39 39 H 1.08996 * 110.90572 * 20.40019 * 23 21 20 40 40 H 1.09003 * 110.90613 * 144.00954 * 23 21 20 41 41 H 1.09000 * 110.61771 * 81.47915 * 24 23 21 42 42 H 1.09004 * 110.61511 * 204.31990 * 24 23 21 43 43 H 1.08997 * 109.88016 * 214.06377 * 26 25 24 44 44 H 1.08994 * 109.87933 * 92.90571 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6111 1.9810 -1.3939 5 1 1.3955 2.6828 0.5836 6 1 3.4865 1.4756 0.8104 7 6 2.0103 -1.2021 0.0005 8 1 1.6137 -2.0549 -0.5304 9 7 3.1979 -1.3067 0.6743 10 6 3.3631 -0.6961 2.0007 11 6 3.8593 -1.7643 2.9802 12 6 5.1297 -2.4108 2.4232 13 6 4.8156 -3.0887 1.0875 14 6 4.3303 -2.0354 0.0866 15 1 5.1395 -1.3385 -0.1318 16 6 3.8830 -2.7230 -1.2050 17 8 3.5291 -1.7175 -2.1911 18 6 3.1111 -2.1597 -3.3920 19 8 3.0442 -3.3532 -3.6104 20 7 2.7667 -1.2787 -4.3520 21 6 2.3124 -1.7599 -5.6590 22 1 2.8575 -2.6589 -5.9463 23 6 2.4828 -0.6568 -6.7318 24 6 1.0582 -0.0502 -6.8030 25 8 0.1956 -1.1963 -6.6386 26 6 0.7959 -2.0330 -5.6358 27 1 -0.4850 0.8400 -0.0004 28 1 2.4064 -0.3021 2.3435 29 1 4.0915 0.1128 1.9424 30 1 3.0900 -2.5256 3.1087 31 1 4.0782 -1.3023 3.9429 32 1 5.4987 -3.1542 3.1298 33 1 5.8904 -1.6450 2.2717 34 1 4.0372 -3.8375 1.2338 35 1 5.7150 -3.5692 0.7026 36 1 3.0167 -3.3521 -1.0006 37 1 4.6964 -3.3384 -1.5895 38 1 2.8204 -0.3260 -4.1778 39 1 3.2080 0.0904 -6.4095 40 1 2.7704 -1.0879 -7.6907 41 1 0.9047 0.6648 -5.9948 42 1 0.8908 0.4236 -7.7702 43 1 0.6046 -3.0814 -5.8647 44 1 0.3897 -1.7857 -4.6551 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375808070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:02 Heat of formation + Delta-G solvation = -126.044379 kcal Electronic energy + Delta-G solvation = -25794.140017 eV Core-core repulsion = 22132.324921 eV Total energy + Delta-G solvation = -3661.815096 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64065 -40.37938 -39.44309 -37.36967 -35.75377 -34.90007 -33.17200 -32.47430 -31.79595 -29.78376 -27.85763 -26.51071 -24.13761 -24.01415 -23.16910 -22.15715 -21.88419 -20.97549 -19.72652 -18.54409 -18.10303 -17.69754 -17.27206 -16.94124 -16.84882 -16.31348 -15.93336 -15.56414 -15.44351 -15.07840 -14.79848 -14.64637 -14.36565 -14.05148 -13.94194 -13.62257 -13.24822 -13.15735 -12.98822 -12.79225 -12.66845 -12.37703 -12.33226 -12.20379 -12.07462 -11.74028 -11.64735 -11.51992 -11.47730 -11.22837 -11.15531 -10.81634 -10.42464 -10.33781 -8.58051 -8.19771 -5.45849 1.20402 1.39101 1.44970 1.54771 1.78393 2.51655 2.88716 3.00069 3.21851 3.36987 3.40376 3.73188 3.89692 3.97815 4.13079 4.13586 4.21322 4.24458 4.32288 4.34594 4.44960 4.50431 4.63988 4.69465 4.69976 4.79348 4.83870 4.89791 4.96665 5.00421 5.08207 5.19206 5.24011 5.29444 5.31854 5.34616 5.54496 5.65168 5.78577 5.98455 6.25429 6.30487 7.06071 7.31522 7.69098 8.18674 9.00532 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.005096 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.932264 B = 5493.303444 C = 6490.762477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.905 3.095 4 H -0.288 1.288 5 H -0.309 1.309 6 H -0.245 1.245 7 C -0.233 4.233 8 H 0.029 0.971 9 N -0.607 5.607 10 C 0.140 3.860 11 C -0.132 4.132 12 C -0.102 4.102 13 C -0.121 4.121 14 C 0.163 3.837 15 H 0.047 0.953 16 C 0.108 3.892 17 O -0.350 6.350 18 C 0.644 3.356 19 O -0.610 6.610 20 N -0.696 5.696 21 C 0.129 3.871 22 H 0.108 0.892 23 C -0.145 4.145 24 C 0.034 3.966 25 O -0.393 6.393 26 C 0.034 3.966 27 H 0.259 0.741 28 H 0.037 0.963 29 H 0.029 0.971 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.412 0.588 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.055 0.945 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.726 -0.837 -7.823 14.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.237 1.237 6 H -0.169 1.169 7 C -0.363 4.363 8 H 0.047 0.953 9 N -0.332 5.332 10 C 0.015 3.985 11 C -0.171 4.171 12 C -0.140 4.140 13 C -0.160 4.160 14 C 0.058 3.942 15 H 0.065 0.935 16 C 0.033 3.967 17 O -0.262 6.262 18 C 0.398 3.602 19 O -0.502 6.502 20 N -0.356 5.356 21 C 0.025 3.975 22 H 0.126 0.874 23 C -0.183 4.183 24 C -0.042 4.042 25 O -0.312 6.312 26 C -0.044 4.044 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.249 0.751 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.073 0.927 42 H 0.143 0.857 43 H 0.115 0.885 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.389 -1.397 -7.961 13.966 hybrid contribution -0.431 1.241 0.243 1.336 sum 10.958 -0.156 -7.718 13.404 Atomic orbital electron populations 1.70184 1.08003 1.27236 1.52185 1.25998 0.95018 1.00342 0.98423 0.86384 0.80555 0.81451 0.78397 1.21475 1.23692 1.16857 1.18149 0.95303 0.93744 1.29090 0.95327 1.44439 1.10068 1.63517 1.15218 1.21321 0.98126 0.94385 0.84651 1.21966 0.98038 0.98666 0.98414 1.21359 0.96705 0.99969 0.95926 1.21879 1.01165 0.97177 0.95809 1.20980 0.90032 0.93620 0.89545 0.93488 1.22979 0.99129 0.88676 0.85927 1.86426 1.77832 1.40784 1.21138 1.18480 0.76251 0.84406 0.81056 1.90894 1.61075 1.15985 1.82289 1.44755 1.69477 1.09433 1.11966 1.22405 0.94007 1.00182 0.80884 0.87364 1.23459 0.98437 0.97321 0.99047 1.23874 0.88280 0.88506 1.03527 1.88870 1.48684 1.34913 1.58733 1.23651 0.92784 0.96363 0.91634 0.93188 0.94444 0.95308 0.93396 0.90396 0.89942 0.91494 0.92853 0.89141 0.93789 0.89755 0.75126 0.87351 0.86107 0.92695 0.85732 0.88533 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.97 21.65 0.30 -57.59 16 2 C 0.00 0.01 4.83 84.86 0.41 0.42 16 3 Si 0.90 44.46 27.40 68.60 1.88 46.34 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 6 H -0.24 -11.17 5.23 99.48 0.52 -10.65 16 7 C -0.23 -12.89 7.59 84.03 0.64 -12.25 16 8 H 0.03 1.82 6.63 -2.91 -0.02 1.80 16 9 N -0.61 -27.67 2.47 -675.13 -1.67 -29.33 16 10 C 0.14 5.75 4.59 86.36 0.40 6.15 16 11 C -0.13 -4.20 6.08 30.67 0.19 -4.01 16 12 C -0.10 -2.66 5.88 30.62 0.18 -2.48 16 13 C -0.12 -3.52 5.37 30.67 0.16 -3.35 16 14 C 0.16 6.08 3.19 44.98 0.14 6.23 16 15 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 16 C 0.11 4.21 4.19 71.98 0.30 4.51 16 17 O -0.35 -14.88 8.75 -55.42 -0.48 -15.37 16 18 C 0.64 25.68 8.74 129.79 1.13 26.82 16 19 O -0.61 -26.48 15.85 19.80 0.31 -26.16 16 20 N -0.70 -22.10 5.02 -565.39 -2.84 -24.94 16 21 C 0.13 3.33 3.34 45.99 0.15 3.48 16 22 H 0.11 2.77 7.67 -2.39 -0.02 2.75 16 23 C -0.15 -2.44 6.78 31.90 0.22 -2.22 16 24 C 0.03 0.69 7.72 72.67 0.56 1.25 16 25 O -0.39 -11.18 11.52 -148.98 -1.72 -12.90 16 26 C 0.03 1.03 7.50 72.36 0.54 1.57 16 27 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.04 1.73 7.03 -2.39 -0.02 1.71 16 29 H 0.03 1.16 6.69 -2.38 -0.02 1.14 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.97 7.09 -2.39 -0.02 1.95 16 37 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.41 12.13 8.64 -92.71 -0.80 11.32 16 39 H 0.11 1.49 7.96 -2.39 -0.02 1.47 16 40 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.04 1.34 7.93 -2.39 -0.02 1.32 16 Total: -1.00 -72.95 345.88 0.82 -72.12 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.00 Total: 21.71 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 5.03 Total: 26.11 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -4.20 Total: -111.86 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -1.89 Total: -54.42 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -72.95 0.82 -72.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375808070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.921 kcal (2) G-P(sol) polarization free energy of solvation -72.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds