Wall clock time and date at job start Tue Mar 31 2020 04:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00054 * 2 1 4 4 H 1.48502 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47405 * 299.99441 * 3 2 1 6 6 H 1.48501 * 109.47320 * 59.99955 * 3 2 1 7 7 C 1.38817 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99742 * 193.21104 * 7 2 1 9 9 N 1.36931 * 119.99756 * 13.20486 * 7 2 1 10 10 C 1.46923 * 120.63641 * 30.53500 * 9 7 2 11 11 C 1.53185 * 108.77933 * 126.38763 * 10 9 7 12 12 C 1.53034 * 109.31548 * 54.63844 * 11 10 9 13 13 C 1.53047 * 109.53558 * 298.63724 * 12 11 10 14 14 C 1.46928 * 120.62903 * 210.52984 * 9 7 2 15 15 H 1.09005 * 109.70648 * 113.75623 * 14 9 7 16 16 C 1.53001 * 109.58837 * 353.40108 * 14 9 7 17 17 O 1.45200 * 109.47013 * 65.71019 * 16 14 9 18 18 C 1.34634 * 116.99445 * 180.02562 * 17 16 14 19 19 O 1.21513 * 120.00761 * 359.97438 * 18 17 16 20 20 N 1.34788 * 119.99743 * 179.97438 * 18 17 16 21 21 C 1.46499 * 120.00032 * 180.02562 * 20 18 17 22 22 H 1.08997 * 110.91158 * 37.13186 * 21 20 18 23 23 C 1.55448 * 110.92451 * 160.75351 * 21 20 18 24 24 C 1.54942 * 100.99314 * 152.22612 * 23 21 20 25 25 O 1.43649 * 105.13350 * 323.60385 * 24 23 21 26 26 C 1.43236 * 109.97167 * 24.42888 * 25 24 23 27 27 H 0.97002 * 119.99691 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.57984 * 6.59906 * 10 9 7 29 29 H 1.08997 * 109.70600 * 246.25297 * 10 9 7 30 30 H 1.09011 * 109.49696 * 294.68439 * 11 10 9 31 31 H 1.08998 * 109.52548 * 174.61123 * 11 10 9 32 32 H 1.09000 * 109.46188 * 178.61975 * 12 11 10 33 33 H 1.08997 * 109.45894 * 58.65279 * 12 11 10 34 34 H 1.09001 * 109.49799 * 301.41064 * 13 12 11 35 35 H 1.09003 * 109.49413 * 181.31594 * 13 12 11 36 36 H 1.09001 * 109.46953 * 305.70592 * 16 14 9 37 37 H 1.09000 * 109.47246 * 185.70826 * 16 14 9 38 38 H 0.97003 * 119.99728 * 0.02562 * 20 18 17 39 39 H 1.09001 * 111.05841 * 34.30352 * 23 21 20 40 40 H 1.08999 * 111.18392 * 270.19738 * 23 21 20 41 41 H 1.09002 * 110.31267 * 204.69174 * 24 23 21 42 42 H 1.08995 * 110.39372 * 82.56004 * 24 23 21 43 43 H 1.09003 * 109.83547 * 117.80147 * 26 25 24 44 44 H 1.08997 * 109.82976 * 238.68284 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0688 -1.2145 0.2143 9 7 1.3526 -2.3725 -0.2698 10 6 0.1897 -2.3876 -1.1676 11 6 0.4283 -3.4282 -2.2662 12 6 0.7431 -4.7805 -1.6228 13 6 2.0173 -4.6636 -0.7831 14 6 1.7967 -3.6370 0.3323 15 1 1.0353 -4.0036 1.0208 16 6 3.1072 -3.4123 1.0892 17 8 2.8692 -2.5306 2.2180 18 6 3.9285 -2.2298 2.9925 19 8 5.0220 -2.6918 2.7327 20 7 3.7762 -1.4161 4.0562 21 6 4.9290 -1.0883 4.8987 22 1 5.8309 -0.9753 4.2972 23 6 4.6585 0.1935 5.7355 24 6 5.5619 -0.0621 6.9681 25 8 5.4806 -1.4765 7.2057 26 6 5.1298 -2.1566 5.9950 27 1 -0.4850 0.8401 -0.0004 28 1 0.0630 -1.4031 -1.6180 29 1 -0.7060 -2.6496 -0.6044 30 1 1.2685 -3.1160 -2.8866 31 1 -0.4657 -3.5181 -2.8832 32 1 0.8892 -5.5283 -2.4022 33 1 -0.0870 -5.0803 -0.9831 34 1 2.8426 -4.3398 -1.4174 35 1 2.2539 -5.6328 -0.3441 36 1 3.8393 -2.9582 0.4213 37 1 3.4876 -4.3684 1.4489 38 1 2.9033 -1.0476 4.2638 39 1 3.6093 0.2587 6.0241 40 1 4.9717 1.0884 5.1977 41 1 5.1887 0.4887 7.8315 42 1 6.5903 0.2266 6.7516 43 1 5.9320 -2.8360 5.7066 44 1 4.2057 -2.7162 6.1396 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375808073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:09 Heat of formation + Delta-G solvation = -106.661682 kcal Electronic energy + Delta-G solvation = -25526.756471 eV Core-core repulsion = 21865.781872 eV Total energy + Delta-G solvation = -3660.974599 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.27540 -39.22970 -37.77074 -35.91091 -34.51616 -33.06227 -31.59659 -30.88812 -29.86810 -28.76071 -26.12944 -24.87536 -22.95599 -22.21626 -21.97632 -20.82573 -20.46232 -19.15919 -18.29326 -17.15071 -16.61879 -16.38499 -16.10710 -15.76791 -15.08750 -14.83673 -14.10557 -14.05059 -13.85512 -13.54349 -13.45199 -13.16997 -12.84287 -12.60776 -12.39760 -12.23789 -11.77244 -11.76953 -11.72574 -11.28917 -11.13454 -10.94233 -10.76391 -10.55901 -10.28463 -10.20475 -10.16248 -9.96600 -9.88131 -9.71566 -9.48923 -9.36054 -9.09014 -8.44240 -6.60417 -5.75375 -3.20432 2.51487 3.22378 3.33697 3.42334 3.44801 3.71908 4.19504 4.47464 4.53987 4.70971 4.80934 4.90978 5.06723 5.21666 5.39319 5.45578 5.52533 5.54915 5.60882 5.62054 5.68373 5.74192 5.81905 5.89538 5.96482 6.03325 6.15740 6.32821 6.35633 6.45444 6.55673 6.69825 6.72606 6.76008 6.85902 6.89465 7.09607 7.41058 7.65968 7.69827 7.82556 8.47068 8.75766 9.23417 9.84266 10.42123 11.33120 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.004746 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.594528 B = 5898.232007 C = 7225.439194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.005 3.995 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.231 4.231 8 H 0.063 0.937 9 N -0.585 5.585 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.106 4.106 13 C -0.127 4.127 14 C 0.171 3.829 15 H 0.036 0.964 16 C 0.103 3.897 17 O -0.328 6.328 18 C 0.648 3.352 19 O -0.587 6.587 20 N -0.705 5.705 21 C 0.135 3.865 22 H 0.106 0.894 23 C -0.165 4.165 24 C 0.054 3.946 25 O -0.383 6.383 26 C 0.038 3.962 27 H 0.251 0.749 28 H 0.087 0.913 29 H 0.018 0.982 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.411 0.589 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.845 -3.404 7.652 10.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.361 4.361 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.144 4.144 13 C -0.167 4.167 14 C 0.064 3.936 15 H 0.054 0.946 16 C 0.029 3.971 17 O -0.240 6.240 18 C 0.402 3.598 19 O -0.478 6.478 20 N -0.366 5.366 21 C 0.029 3.971 22 H 0.124 0.876 23 C -0.204 4.204 24 C -0.023 4.023 25 O -0.302 6.302 26 C -0.040 4.040 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.247 0.753 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.281 -3.630 7.643 10.538 hybrid contribution 0.016 1.178 -0.187 1.193 sum 6.296 -2.452 7.456 10.062 Atomic orbital electron populations 1.70005 1.05087 1.25030 1.54764 1.25025 0.95215 0.97982 1.01076 0.86339 0.79387 0.84524 0.77280 1.20461 1.21642 1.21798 1.19046 0.91221 0.83820 1.42031 0.91904 1.44062 1.34304 1.02024 1.50452 1.20774 0.88101 0.97632 0.88710 1.22212 0.99969 0.96529 0.99703 1.21350 0.97267 0.97523 0.98259 1.21935 0.98457 0.97990 0.98268 1.20599 0.92404 0.89005 0.91601 0.94619 1.23015 0.99370 0.90318 0.84432 1.86523 1.34768 1.63636 1.39050 1.18299 0.83209 0.78476 0.79784 1.90932 1.26236 1.56987 1.73633 1.44434 1.12712 1.51416 1.27999 1.22383 0.89960 0.93459 0.91256 0.87610 1.23584 1.02149 0.98091 0.96526 1.23314 0.99042 0.82473 0.97455 1.88426 1.91380 1.18421 1.31954 1.23638 1.01471 0.95172 0.83729 0.93873 0.89446 0.96426 0.92782 0.93398 0.93526 0.92743 0.91975 0.92898 0.90986 0.92502 0.75286 0.89268 0.88736 0.89270 0.91709 0.90446 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.64 11.14 55.49 0.62 -25.02 16 2 C 0.01 0.14 4.99 -17.43 -0.09 0.05 16 3 Si 0.89 21.58 29.57 -169.99 -5.03 16.56 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.13 7.84 -15.06 -0.12 -6.24 16 8 H 0.06 1.70 5.88 -52.48 -0.31 1.39 16 9 N -0.58 -14.16 2.99 -164.78 -0.49 -14.65 16 10 C 0.17 4.05 5.27 -3.72 -0.02 4.03 16 11 C -0.14 -2.72 6.08 -26.62 -0.16 -2.89 16 12 C -0.11 -1.76 5.88 -26.69 -0.16 -1.92 16 13 C -0.13 -2.16 5.37 -26.61 -0.14 -2.31 16 14 C 0.17 3.50 3.20 -67.60 -0.22 3.28 16 15 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 16 C 0.10 2.06 4.15 37.16 0.15 2.21 16 17 O -0.33 -6.91 8.63 -40.31 -0.35 -7.25 16 18 C 0.65 12.42 8.75 54.06 0.47 12.89 16 19 O -0.59 -12.24 15.87 -19.28 -0.31 -12.55 16 20 N -0.71 -10.75 5.15 -56.75 -0.29 -11.05 16 21 C 0.13 1.71 3.28 -65.91 -0.22 1.49 16 22 H 0.11 1.44 7.72 -51.93 -0.40 1.04 16 23 C -0.17 -1.60 6.78 -24.41 -0.17 -1.77 16 24 C 0.05 0.50 7.78 38.18 0.30 0.79 16 25 O -0.38 -4.71 11.36 -35.23 -0.40 -5.11 16 26 C 0.04 0.47 7.55 37.88 0.29 0.76 16 27 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.09 2.29 6.12 -51.93 -0.32 1.97 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.53 7.07 -51.93 -0.37 1.16 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.41 5.77 8.63 -40.82 -0.35 5.42 16 39 H 0.09 0.81 7.99 -51.93 -0.42 0.40 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -31.25 348.53 -8.28 -39.53 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.21 Total: 3.91 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -0.07 Total: 10.38 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.17 Total: -50.72 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -1.05 Total: -24.91 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.25 -8.28 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375808073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.134 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds