Wall clock time and date at job start Tue Mar 31 2020 04:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00054 * 2 1 4 4 H 1.48502 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47405 * 299.99441 * 3 2 1 6 6 H 1.48501 * 109.47320 * 59.99955 * 3 2 1 7 7 C 1.38817 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99742 * 193.21104 * 7 2 1 9 9 N 1.36931 * 119.99756 * 13.20486 * 7 2 1 10 10 C 1.46923 * 120.63641 * 30.53500 * 9 7 2 11 11 C 1.53185 * 108.77933 * 126.38763 * 10 9 7 12 12 C 1.53034 * 109.31548 * 54.63844 * 11 10 9 13 13 C 1.53047 * 109.53558 * 298.63724 * 12 11 10 14 14 C 1.46928 * 120.62903 * 210.52984 * 9 7 2 15 15 H 1.09005 * 109.70648 * 113.75623 * 14 9 7 16 16 C 1.53001 * 109.58837 * 353.40108 * 14 9 7 17 17 O 1.45200 * 109.47013 * 65.71019 * 16 14 9 18 18 C 1.34634 * 116.99445 * 180.02562 * 17 16 14 19 19 O 1.21513 * 120.00761 * 359.97438 * 18 17 16 20 20 N 1.34788 * 119.99743 * 179.97438 * 18 17 16 21 21 C 1.46499 * 120.00032 * 180.02562 * 20 18 17 22 22 H 1.08997 * 110.91158 * 37.13186 * 21 20 18 23 23 C 1.55448 * 110.92451 * 160.75351 * 21 20 18 24 24 C 1.54942 * 100.99314 * 152.22612 * 23 21 20 25 25 O 1.43649 * 105.13350 * 323.60385 * 24 23 21 26 26 C 1.43236 * 109.97167 * 24.42888 * 25 24 23 27 27 H 0.97002 * 119.99691 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.57984 * 6.59906 * 10 9 7 29 29 H 1.08997 * 109.70600 * 246.25297 * 10 9 7 30 30 H 1.09011 * 109.49696 * 294.68439 * 11 10 9 31 31 H 1.08998 * 109.52548 * 174.61123 * 11 10 9 32 32 H 1.09000 * 109.46188 * 178.61975 * 12 11 10 33 33 H 1.08997 * 109.45894 * 58.65279 * 12 11 10 34 34 H 1.09001 * 109.49799 * 301.41064 * 13 12 11 35 35 H 1.09003 * 109.49413 * 181.31594 * 13 12 11 36 36 H 1.09001 * 109.46953 * 305.70592 * 16 14 9 37 37 H 1.09000 * 109.47246 * 185.70826 * 16 14 9 38 38 H 0.97003 * 119.99728 * 0.02562 * 20 18 17 39 39 H 1.09001 * 111.05841 * 34.30352 * 23 21 20 40 40 H 1.08999 * 111.18392 * 270.19738 * 23 21 20 41 41 H 1.09002 * 110.31267 * 204.69174 * 24 23 21 42 42 H 1.08995 * 110.39372 * 82.56004 * 24 23 21 43 43 H 1.09003 * 109.83547 * 117.80147 * 26 25 24 44 44 H 1.08997 * 109.82976 * 238.68284 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0688 -1.2145 0.2143 9 7 1.3526 -2.3725 -0.2698 10 6 0.1897 -2.3876 -1.1676 11 6 0.4283 -3.4282 -2.2662 12 6 0.7431 -4.7805 -1.6228 13 6 2.0173 -4.6636 -0.7831 14 6 1.7967 -3.6370 0.3323 15 1 1.0353 -4.0036 1.0208 16 6 3.1072 -3.4123 1.0892 17 8 2.8692 -2.5306 2.2180 18 6 3.9285 -2.2298 2.9925 19 8 5.0220 -2.6918 2.7327 20 7 3.7762 -1.4161 4.0562 21 6 4.9290 -1.0883 4.8987 22 1 5.8309 -0.9753 4.2972 23 6 4.6585 0.1935 5.7355 24 6 5.5619 -0.0621 6.9681 25 8 5.4806 -1.4765 7.2057 26 6 5.1298 -2.1566 5.9950 27 1 -0.4850 0.8401 -0.0004 28 1 0.0630 -1.4031 -1.6180 29 1 -0.7060 -2.6496 -0.6044 30 1 1.2685 -3.1160 -2.8866 31 1 -0.4657 -3.5181 -2.8832 32 1 0.8892 -5.5283 -2.4022 33 1 -0.0870 -5.0803 -0.9831 34 1 2.8426 -4.3398 -1.4174 35 1 2.2539 -5.6328 -0.3441 36 1 3.8393 -2.9582 0.4213 37 1 3.4876 -4.3684 1.4489 38 1 2.9033 -1.0476 4.2638 39 1 3.6093 0.2587 6.0241 40 1 4.9717 1.0884 5.1977 41 1 5.1887 0.4887 7.8315 42 1 6.5903 0.2266 6.7516 43 1 5.9320 -2.8360 5.7066 44 1 4.2057 -2.7162 6.1396 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375808073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:08 Heat of formation + Delta-G solvation = -128.078949 kcal Electronic energy + Delta-G solvation = -25527.685193 eV Core-core repulsion = 21865.781872 eV Total energy + Delta-G solvation = -3661.903322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.63170 -40.36784 -39.36030 -37.40212 -35.82615 -34.91424 -33.14816 -31.93435 -31.68706 -29.75802 -27.78791 -26.67587 -24.08003 -23.76808 -23.08347 -22.25585 -21.89935 -20.78710 -19.70924 -18.54229 -18.08672 -17.90208 -17.36028 -17.10094 -16.65430 -16.02783 -15.81957 -15.61891 -15.13189 -15.00225 -14.70626 -14.48029 -14.33156 -14.08944 -13.83934 -13.53685 -13.30664 -13.04090 -12.84131 -12.80095 -12.58763 -12.57261 -12.36483 -12.01629 -11.99452 -11.84976 -11.74711 -11.55593 -11.48905 -11.12751 -11.06085 -10.60862 -10.48645 -10.34352 -8.56674 -7.80219 -5.27024 1.17282 1.39785 1.43683 1.51890 1.73513 2.50592 2.81840 3.16608 3.35585 3.37181 3.52718 3.77199 3.90988 4.00693 4.03455 4.20017 4.23772 4.25280 4.32682 4.37054 4.49707 4.58985 4.65798 4.68683 4.79819 4.80420 4.86710 4.94735 4.96150 5.09612 5.18832 5.25473 5.26999 5.35091 5.43267 5.57030 5.60891 5.73168 5.83926 5.89537 6.29240 6.45427 7.21355 7.29602 7.89183 8.42230 9.26049 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.004746 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.594528 B = 5898.232007 C = 7225.439194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.045 4.045 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.223 4.223 8 H 0.055 0.945 9 N -0.601 5.601 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.102 4.102 13 C -0.120 4.120 14 C 0.166 3.834 15 H 0.028 0.972 16 C 0.106 3.894 17 O -0.350 6.350 18 C 0.643 3.357 19 O -0.608 6.608 20 N -0.692 5.692 21 C 0.127 3.873 22 H 0.096 0.904 23 C -0.157 4.157 24 C 0.051 3.949 25 O -0.398 6.398 26 C 0.045 3.955 27 H 0.246 0.754 28 H 0.052 0.948 29 H -0.004 1.004 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.417 0.583 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.607 -4.063 8.055 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.240 4.240 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.354 4.354 8 H 0.073 0.927 9 N -0.326 5.326 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.140 4.140 13 C -0.159 4.159 14 C 0.060 3.940 15 H 0.046 0.954 16 C 0.031 3.969 17 O -0.262 6.262 18 C 0.397 3.603 19 O -0.501 6.501 20 N -0.353 5.353 21 C 0.023 3.977 22 H 0.114 0.886 23 C -0.195 4.195 24 C -0.025 4.025 25 O -0.317 6.317 26 C -0.033 4.033 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.014 0.986 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.254 0.746 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.054 -4.295 8.067 11.545 hybrid contribution -0.196 1.359 -0.256 1.397 sum 6.858 -2.936 7.811 10.801 Atomic orbital electron populations 1.70145 1.06196 1.25145 1.56595 1.25605 0.95854 1.00522 1.01970 0.85491 0.78237 0.81461 0.77036 1.20360 1.21936 1.21416 1.19130 0.90941 0.84916 1.40409 0.92742 1.44295 1.34228 1.02815 1.51214 1.20601 0.87284 0.97354 0.89558 1.22058 1.00728 0.96476 0.98173 1.21349 0.96973 0.96625 0.99015 1.21887 0.98711 0.98269 0.97029 1.20826 0.92267 0.88185 0.92692 0.95396 1.23020 0.98601 0.91147 0.84088 1.86497 1.35874 1.64234 1.39590 1.18504 0.82581 0.78940 0.80305 1.90905 1.26745 1.58065 1.74378 1.44525 1.13858 1.49966 1.26908 1.22584 0.88696 0.95393 0.91054 0.88623 1.23605 1.02914 0.96800 0.96135 1.23546 0.99855 0.81025 0.98039 1.88411 1.91456 1.20122 1.31705 1.23478 1.01064 0.95006 0.83789 0.94421 0.92989 0.98608 0.93253 0.91448 0.90056 0.92484 0.92257 0.89473 0.92760 0.89981 0.74588 0.88469 0.87491 0.87052 0.90444 0.91141 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 11.14 21.65 0.24 -54.19 16 2 C -0.04 -2.47 4.99 84.86 0.42 -2.04 16 3 Si 0.95 45.01 29.57 68.60 2.03 47.04 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.22 -12.01 7.84 84.04 0.66 -11.35 16 8 H 0.05 3.00 5.88 -2.91 -0.02 2.98 16 9 N -0.60 -29.38 2.99 -675.24 -2.02 -31.40 16 10 C 0.18 8.42 5.27 86.36 0.45 8.87 16 11 C -0.14 -4.90 6.08 30.67 0.19 -4.71 16 12 C -0.10 -3.07 5.88 30.62 0.18 -2.89 16 13 C -0.12 -3.77 5.37 30.67 0.16 -3.60 16 14 C 0.17 6.68 3.20 44.97 0.14 6.82 16 15 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 16 C 0.11 4.17 4.15 71.98 0.30 4.47 16 17 O -0.35 -14.78 8.63 -55.43 -0.48 -15.26 16 18 C 0.64 24.62 8.75 129.79 1.14 25.76 16 19 O -0.61 -25.37 15.87 19.80 0.31 -25.06 16 20 N -0.69 -20.79 5.15 -563.85 -2.90 -23.70 16 21 C 0.13 3.11 3.28 46.30 0.15 3.26 16 22 H 0.10 2.56 7.72 -2.39 -0.02 2.54 16 23 C -0.16 -2.71 6.78 32.10 0.22 -2.49 16 24 C 0.05 0.82 7.78 72.65 0.57 1.39 16 25 O -0.40 -9.17 11.36 -148.98 -1.69 -10.86 16 26 C 0.04 1.08 7.55 72.45 0.55 1.62 16 27 H 0.25 13.99 8.31 -92.71 -0.77 13.21 16 28 H 0.05 2.82 6.12 -2.39 -0.01 2.80 16 29 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 2.31 7.07 -2.39 -0.02 2.29 16 37 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.42 11.47 8.63 -92.71 -0.80 10.67 16 39 H 0.10 1.55 7.99 -2.39 -0.02 1.53 16 40 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 44 H 0.07 1.78 8.02 -2.39 -0.02 1.76 16 Total: -1.00 -68.49 348.53 0.82 -67.67 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.19 Total: 20.65 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 5.13 Total: 25.10 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -4.68 Total: -109.28 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -1.86 Total: -51.18 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -68.49 0.82 -67.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375808073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.410 kcal (2) G-P(sol) polarization free energy of solvation -68.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds