Wall clock time and date at job start Tue Mar 31 2020 04:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00422 * 2 1 4 4 O 1.20827 * 119.99715 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00162 * 179.97438 * 3 2 1 6 6 C 1.52996 * 110.28987 * 302.13397 * 5 3 2 7 7 C 1.54620 * 110.32892 * 64.37984 * 5 3 2 8 8 C 1.54596 * 102.91449 * 140.58948 * 7 5 3 9 9 N 1.48117 * 103.42097 * 322.87141 * 8 7 5 10 10 C 1.34779 * 127.02682 * 219.28651 * 9 8 7 11 11 O 1.21286 * 119.99723 * 179.68169 * 10 9 8 12 12 C 1.50699 * 120.00420 * 359.67998 * 10 9 8 13 13 H 1.09002 * 109.46753 * 40.00082 * 12 10 9 14 14 N 1.46898 * 109.47192 * 160.00127 * 12 10 9 15 15 C 1.52992 * 109.47482 * 280.00353 * 12 10 9 16 16 C 1.52997 * 109.47482 * 174.99860 * 15 12 10 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 C 1.47481 * 105.93518 * 39.01861 * 9 8 7 26 26 H 1.09000 * 109.47698 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47467 * 300.00558 * 1 2 3 28 28 H 1.09006 * 109.47245 * 60.00231 * 1 2 3 29 29 H 1.09000 * 109.47346 * 297.86507 * 6 5 3 30 30 H 1.08997 * 109.47416 * 57.86671 * 6 5 3 31 31 H 1.09007 * 109.47011 * 177.86737 * 6 5 3 32 32 H 1.09000 * 110.73744 * 259.08264 * 7 5 3 33 33 H 1.09001 * 110.73654 * 22.21836 * 7 5 3 34 34 H 1.08996 * 110.61813 * 204.35508 * 8 7 5 35 35 H 1.08996 * 110.54332 * 81.34852 * 8 7 5 36 36 H 1.00899 * 111.00057 * 59.99855 * 14 12 10 37 37 H 1.00898 * 110.99947 * 183.96241 * 14 12 10 38 38 H 1.09002 * 109.47103 * 54.99613 * 15 12 10 39 39 H 1.08998 * 109.46862 * 295.00425 * 15 12 10 40 40 H 1.09002 * 109.47153 * 59.99783 * 16 15 12 41 41 H 1.09001 * 109.46832 * 299.99974 * 16 15 12 42 42 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.90893 * 94.14303 * 25 9 8 44 44 H 1.08996 * 109.91163 * 215.41723 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.1356 0.5405 1.2162 7 6 4.1361 0.6765 -1.3064 8 6 5.2994 1.6359 -1.6472 9 7 4.7778 2.9637 -1.2487 10 6 4.9509 4.1320 -1.8982 11 8 4.4589 5.1493 -1.4577 12 6 5.7557 4.1743 -3.1716 13 1 5.5274 3.2957 -3.7750 14 7 5.4157 5.3882 -3.9257 15 6 7.2474 4.1860 -2.8320 16 6 8.0650 4.1030 -4.1226 17 6 9.5344 4.1152 -3.7881 18 1 9.8532 4.1756 -2.7581 19 6 10.4716 4.0482 -4.7971 20 7 11.7539 4.0583 -4.5052 21 14 9.9201 3.9430 -6.5787 22 1 9.7823 5.3127 -7.1359 23 1 10.9282 3.1879 -7.3652 24 1 8.6114 3.2451 -6.6514 25 6 4.0250 2.7448 0.0004 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.7850 1.0224 2.1288 30 1 3.8027 -0.4974 1.2025 31 1 5.2247 0.5732 1.1832 32 1 4.5046 -0.3356 -1.1391 33 1 3.3840 0.6863 -2.0953 34 1 5.5159 1.6124 -2.7152 35 1 6.1870 1.3817 -1.0681 36 1 5.6183 6.2171 -3.3872 37 1 5.8939 5.4079 -4.8139 38 1 7.4824 3.3313 -2.1976 39 1 7.4928 5.1080 -2.3050 40 1 7.8301 4.9577 -4.7571 41 1 7.8195 3.1810 -4.6495 42 1 12.4133 4.0115 -5.2150 43 1 4.6689 2.9329 0.8596 44 1 3.1578 3.4044 0.0316 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424165162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:58 Heat of formation + Delta-G solvation = -124.898969 kcal Electronic energy + Delta-G solvation = -24977.479937 eV Core-core repulsion = 21315.714509 eV Total energy + Delta-G solvation = -3661.765427 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.31353 -39.83038 -37.94521 -36.67602 -35.59797 -33.33326 -32.80202 -30.33378 -29.82285 -28.30155 -27.73850 -26.17537 -24.72193 -23.05315 -22.68301 -20.40307 -19.94090 -19.15704 -17.89053 -17.43995 -16.88730 -16.65722 -16.52072 -15.85761 -15.59219 -14.59358 -14.40225 -14.25973 -14.19490 -13.94815 -13.69226 -13.54707 -13.20597 -12.95189 -12.68257 -12.64753 -12.49172 -12.41689 -12.32681 -12.02389 -11.87107 -11.33138 -11.31526 -11.16001 -11.12403 -10.97285 -10.54776 -10.34311 -10.12042 -9.88002 -9.41578 -9.32809 -8.72388 -8.63317 -8.31963 -6.12949 -4.12500 1.86960 2.26737 2.85446 2.96155 3.24206 3.32533 3.33454 3.93080 4.12263 4.32254 4.36498 4.59111 4.75857 4.77978 4.82177 4.85226 4.98744 5.05304 5.16180 5.20011 5.25486 5.33484 5.35786 5.47676 5.51794 5.56867 5.60687 5.69662 5.75686 5.80365 6.04422 6.12950 6.17172 6.34045 6.64224 7.07427 7.20339 7.32714 7.40579 7.59258 7.65802 7.77884 8.35666 8.43488 8.91124 9.48345 11.00266 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.024018 B = 0.003273 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.493887 B = 8553.134172 C = 8865.754217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.473 3.527 4 O -0.497 6.497 5 C -0.067 4.067 6 C -0.137 4.137 7 C -0.119 4.119 8 C 0.097 3.903 9 N -0.624 5.624 10 C 0.546 3.454 11 O -0.531 6.531 12 C 0.077 3.923 13 H 0.096 0.904 14 N -0.831 5.831 15 C -0.129 4.129 16 C -0.010 4.010 17 C -0.523 4.523 18 H 0.071 0.929 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 C 0.113 3.887 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.349 0.651 37 H 0.351 0.649 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.011 0.989 41 H 0.018 0.982 42 H 0.264 0.736 43 H 0.079 0.921 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.977 -12.174 8.908 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.270 6.270 3 C 0.315 3.685 4 O -0.384 6.384 5 C -0.069 4.069 6 C -0.194 4.194 7 C -0.157 4.157 8 C -0.026 4.026 9 N -0.360 5.360 10 C 0.336 3.664 11 O -0.406 6.406 12 C -0.038 4.038 13 H 0.114 0.886 14 N -0.363 5.363 15 C -0.169 4.169 16 C -0.047 4.047 17 C -0.561 4.561 18 H 0.089 0.911 19 C -0.134 4.134 20 N -0.539 5.539 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 C -0.010 4.010 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.029 0.971 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.038 -11.474 9.014 24.788 hybrid contribution 0.684 0.111 -0.862 1.106 sum -19.354 -11.363 8.152 23.878 Atomic orbital electron populations 1.23299 0.76226 1.03760 1.02695 1.86493 1.23414 1.33075 1.84048 1.23443 0.91556 0.81421 0.72073 1.90697 1.66757 1.36289 1.44623 1.21408 0.87405 0.98411 0.99700 1.21893 1.02210 1.00507 0.94838 1.22780 0.98317 0.99956 0.94666 1.22597 0.96293 0.81271 1.02430 1.48720 1.53584 1.08012 1.25655 1.20497 0.79665 0.81194 0.85084 1.90664 1.49405 1.32778 1.67766 1.21474 0.94410 0.95949 0.91994 0.88605 1.58716 1.65802 1.03800 1.08019 1.22197 0.91180 1.02423 1.01068 1.19570 0.96226 0.96289 0.92627 1.21059 0.88535 1.51134 0.95398 0.91055 1.25040 0.94787 0.94437 0.99156 1.69911 1.00350 1.50581 1.33076 0.86774 0.78796 0.78588 0.85081 1.20221 1.21329 1.18968 1.22034 0.98021 0.93092 0.87819 0.87947 0.91843 0.91826 0.91650 0.90653 0.90187 0.88199 0.90282 0.88889 0.89736 0.83767 0.83423 0.91810 0.92034 0.97059 0.96376 0.92623 0.90275 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.23 10.42 -39.25 -0.41 -3.64 16 3 C 0.47 5.24 6.48 36.00 0.23 5.48 16 4 O -0.50 -7.20 14.99 -18.75 -0.28 -7.48 16 5 C -0.07 -0.63 0.91 -154.29 -0.14 -0.77 16 6 C -0.14 -0.91 8.15 37.16 0.30 -0.61 16 7 C -0.12 -0.98 6.15 -25.04 -0.15 -1.14 16 8 C 0.10 1.00 6.57 -2.31 -0.02 0.98 16 9 N -0.62 -8.62 3.29 -169.99 -0.56 -9.18 16 10 C 0.55 9.43 7.14 -10.98 -0.08 9.35 16 11 O -0.53 -10.96 16.59 5.55 0.09 -10.87 16 12 C 0.08 1.27 2.62 -68.87 -0.18 1.09 16 13 H 0.10 1.45 6.91 -51.93 -0.36 1.09 16 14 N -0.83 -13.88 8.94 -5.66 -0.05 -13.93 16 15 C -0.13 -2.42 4.78 -26.74 -0.13 -2.55 16 16 C -0.01 -0.21 3.81 -27.88 -0.11 -0.32 16 17 C -0.52 -14.32 9.66 -34.44 -0.33 -14.66 16 18 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 19 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 21 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 25 C 0.11 1.41 6.23 -2.98 -0.02 1.39 16 26 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 31 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 32 H 0.10 0.58 7.86 -51.93 -0.41 0.17 16 33 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 34 H 0.09 0.94 6.67 -51.93 -0.35 0.59 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.35 5.94 8.58 -39.29 -0.34 5.60 16 37 H 0.35 5.55 7.55 -39.29 -0.30 5.26 16 38 H 0.06 1.15 7.78 -51.93 -0.40 0.75 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.01 0.24 6.30 -51.93 -0.33 -0.08 16 41 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.08 0.89 7.68 -51.93 -0.40 0.49 16 44 H 0.10 1.52 6.33 -51.93 -0.33 1.19 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -34.87 356.98 -6.32 -41.19 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.95 Total: 7.34 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 0.35 Total: 1.35 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.16 Total: -49.47 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.60 Total: -21.99 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.87 -6.32 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424165162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.710 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds