Wall clock time and date at job start Tue Mar 31 2020 04:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00422 * 2 1 4 4 O 1.20827 * 119.99715 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00162 * 179.97438 * 3 2 1 6 6 C 1.52996 * 110.28987 * 302.13397 * 5 3 2 7 7 C 1.54620 * 110.32892 * 64.37984 * 5 3 2 8 8 C 1.54596 * 102.91449 * 140.58948 * 7 5 3 9 9 N 1.48117 * 103.42097 * 322.87141 * 8 7 5 10 10 C 1.34779 * 127.02682 * 219.28651 * 9 8 7 11 11 O 1.21286 * 119.99723 * 179.68169 * 10 9 8 12 12 C 1.50699 * 120.00420 * 359.67998 * 10 9 8 13 13 H 1.09002 * 109.46753 * 40.00082 * 12 10 9 14 14 N 1.46898 * 109.47192 * 160.00127 * 12 10 9 15 15 C 1.52992 * 109.47482 * 280.00353 * 12 10 9 16 16 C 1.52997 * 109.47482 * 174.99860 * 15 12 10 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 C 1.47481 * 105.93518 * 39.01861 * 9 8 7 26 26 H 1.09000 * 109.47698 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47467 * 300.00558 * 1 2 3 28 28 H 1.09006 * 109.47245 * 60.00231 * 1 2 3 29 29 H 1.09000 * 109.47346 * 297.86507 * 6 5 3 30 30 H 1.08997 * 109.47416 * 57.86671 * 6 5 3 31 31 H 1.09007 * 109.47011 * 177.86737 * 6 5 3 32 32 H 1.09000 * 110.73744 * 259.08264 * 7 5 3 33 33 H 1.09001 * 110.73654 * 22.21836 * 7 5 3 34 34 H 1.08996 * 110.61813 * 204.35508 * 8 7 5 35 35 H 1.08996 * 110.54332 * 81.34852 * 8 7 5 36 36 H 1.00899 * 111.00057 * 59.99855 * 14 12 10 37 37 H 1.00898 * 110.99947 * 183.96241 * 14 12 10 38 38 H 1.09002 * 109.47103 * 54.99613 * 15 12 10 39 39 H 1.08998 * 109.46862 * 295.00425 * 15 12 10 40 40 H 1.09002 * 109.47153 * 59.99783 * 16 15 12 41 41 H 1.09001 * 109.46832 * 299.99974 * 16 15 12 42 42 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.90893 * 94.14303 * 25 9 8 44 44 H 1.08996 * 109.91163 * 215.41723 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.1356 0.5405 1.2162 7 6 4.1361 0.6765 -1.3064 8 6 5.2994 1.6359 -1.6472 9 7 4.7778 2.9637 -1.2487 10 6 4.9509 4.1320 -1.8982 11 8 4.4589 5.1493 -1.4577 12 6 5.7557 4.1743 -3.1716 13 1 5.5274 3.2957 -3.7750 14 7 5.4157 5.3882 -3.9257 15 6 7.2474 4.1860 -2.8320 16 6 8.0650 4.1030 -4.1226 17 6 9.5344 4.1152 -3.7881 18 1 9.8532 4.1756 -2.7581 19 6 10.4716 4.0482 -4.7971 20 7 11.7539 4.0583 -4.5052 21 14 9.9201 3.9430 -6.5787 22 1 9.7823 5.3127 -7.1359 23 1 10.9282 3.1879 -7.3652 24 1 8.6114 3.2451 -6.6514 25 6 4.0250 2.7448 0.0004 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.7850 1.0224 2.1288 30 1 3.8027 -0.4974 1.2025 31 1 5.2247 0.5732 1.1832 32 1 4.5046 -0.3356 -1.1391 33 1 3.3840 0.6863 -2.0953 34 1 5.5159 1.6124 -2.7152 35 1 6.1870 1.3817 -1.0681 36 1 5.6183 6.2171 -3.3872 37 1 5.8939 5.4079 -4.8139 38 1 7.4824 3.3313 -2.1976 39 1 7.4928 5.1080 -2.3050 40 1 7.8301 4.9577 -4.7571 41 1 7.8195 3.1810 -4.6495 42 1 12.4133 4.0115 -5.2150 43 1 4.6689 2.9329 0.8596 44 1 3.1578 3.4044 0.0316 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424165162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:57 Heat of formation + Delta-G solvation = -150.631820 kcal Electronic energy + Delta-G solvation = -24978.595797 eV Core-core repulsion = 21315.714509 eV Total energy + Delta-G solvation = -3662.881288 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.18887 -40.96517 -38.96547 -37.54384 -37.12954 -34.82026 -34.24884 -32.09168 -30.64554 -29.23073 -28.65480 -27.40724 -25.84986 -24.42427 -23.52264 -22.05607 -20.77467 -20.34212 -19.17079 -18.68232 -18.28593 -17.57800 -17.39122 -16.99936 -16.72497 -16.22387 -15.83164 -15.57449 -15.20828 -14.98291 -14.83103 -14.65750 -14.51680 -14.10880 -13.79953 -13.76737 -13.57169 -13.30118 -13.20014 -12.99402 -12.96179 -12.80216 -12.63125 -12.10292 -12.05386 -11.90308 -11.85786 -11.80612 -11.65017 -11.40230 -11.37928 -10.83697 -10.75223 -9.85813 -9.67576 -8.27969 -6.33311 1.03051 1.40658 1.41228 1.49680 1.52456 1.53425 1.91383 2.37880 3.07799 3.09581 3.37074 3.55675 3.68152 3.70355 3.90514 4.02817 4.13056 4.13886 4.25400 4.27914 4.29416 4.54255 4.59594 4.60935 4.63489 4.69577 4.74381 4.82981 4.87565 4.94723 4.96087 5.04693 5.17191 5.27625 5.32337 5.36256 5.47345 5.63899 6.02210 6.26996 6.40841 6.46816 6.59957 6.75045 7.07372 7.31479 8.88751 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.024018 B = 0.003273 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.493887 B = 8553.134172 C = 8865.754217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.348 6.348 3 C 0.474 3.526 4 O -0.541 6.541 5 C -0.061 4.061 6 C -0.133 4.133 7 C -0.109 4.109 8 C 0.088 3.912 9 N -0.622 5.622 10 C 0.538 3.462 11 O -0.577 6.577 12 C 0.088 3.912 13 H 0.119 0.881 14 N -0.833 5.833 15 C -0.116 4.116 16 C -0.004 4.004 17 C -0.532 4.532 18 H 0.028 0.972 19 C 0.004 3.996 20 N -0.953 5.953 21 Si 0.952 3.048 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.235 1.235 25 C 0.108 3.892 26 H 0.137 0.863 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.345 0.655 37 H 0.357 0.643 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.021 0.979 41 H 0.035 0.965 42 H 0.266 0.734 43 H 0.089 0.911 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.216 -14.828 7.821 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.264 6.264 3 C 0.318 3.682 4 O -0.430 6.430 5 C -0.063 4.063 6 C -0.190 4.190 7 C -0.147 4.147 8 C -0.034 4.034 9 N -0.356 5.356 10 C 0.328 3.672 11 O -0.456 6.456 12 C -0.027 4.027 13 H 0.137 0.863 14 N -0.366 5.366 15 C -0.156 4.156 16 C -0.042 4.042 17 C -0.570 4.570 18 H 0.046 0.954 19 C -0.193 4.193 20 N -0.593 5.593 21 Si 0.775 3.225 22 H -0.196 1.196 23 H -0.214 1.214 24 H -0.158 1.158 25 C -0.015 4.015 26 H 0.155 0.845 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.154 0.846 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.158 0.842 37 H 0.172 0.828 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.039 0.961 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.296 -14.200 7.941 26.800 hybrid contribution 1.059 0.905 -0.397 1.448 sum -20.237 -13.295 7.544 25.362 Atomic orbital electron populations 1.23579 0.74882 1.05923 1.02281 1.86486 1.24718 1.31766 1.83383 1.23805 0.92223 0.81316 0.70857 1.90691 1.67787 1.37776 1.46773 1.21417 0.86471 0.96516 1.01859 1.21931 1.02896 1.00971 0.93185 1.22819 0.97220 1.01083 0.93557 1.22943 0.97668 0.79566 1.03203 1.48786 1.52732 1.08489 1.25612 1.20613 0.79634 0.81621 0.85354 1.90639 1.51461 1.34610 1.68876 1.21385 0.92418 0.96766 0.92169 0.86326 1.58727 1.65807 1.03755 1.08262 1.21995 0.92501 1.01624 0.99432 1.19491 0.93067 0.97281 0.94335 1.21410 0.91667 1.50400 0.93546 0.95409 1.26050 0.94614 0.94056 1.04597 1.70078 1.01979 1.52448 1.34814 0.85635 0.79530 0.79047 0.78284 1.19640 1.21382 1.15784 1.22123 0.96882 0.94854 0.87591 0.84453 0.92057 0.92572 0.91796 0.88813 0.88825 0.84576 0.90804 0.88286 0.88025 0.84179 0.82760 0.91247 0.94198 0.96089 0.94683 0.92543 0.89270 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.62 10.42 -51.39 -0.54 -6.16 16 3 C 0.47 10.03 6.48 71.23 0.46 10.49 16 4 O -0.54 -15.98 14.99 21.96 0.33 -15.65 16 5 C -0.06 -1.02 0.91 -52.04 -0.05 -1.07 16 6 C -0.13 -1.35 8.15 71.98 0.59 -0.77 16 7 C -0.11 -1.44 6.15 31.69 0.19 -1.25 16 8 C 0.09 1.55 6.57 86.61 0.57 2.12 16 9 N -0.62 -16.60 3.29 -810.11 -2.67 -19.27 16 10 C 0.54 18.44 7.14 87.66 0.63 19.07 16 11 O -0.58 -24.44 16.59 -3.05 -0.05 -24.49 16 12 C 0.09 2.77 2.62 44.17 0.12 2.89 16 13 H 0.12 3.22 6.91 -2.39 -0.02 3.21 16 14 N -0.83 -26.85 8.94 -171.81 -1.54 -28.39 16 15 C -0.12 -4.24 4.78 30.59 0.15 -4.09 16 16 C 0.00 -0.18 3.81 29.85 0.11 -0.07 16 17 C -0.53 -29.30 9.66 25.60 0.25 -29.05 16 18 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 19 C 0.00 0.20 5.47 84.66 0.46 0.66 16 20 N -0.95 -58.49 13.96 21.45 0.30 -58.19 16 21 Si 0.95 41.87 27.47 68.60 1.88 43.75 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.23 -9.13 6.54 99.48 0.65 -8.48 16 25 C 0.11 2.65 6.23 86.53 0.54 3.19 16 26 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 28 H 0.06 0.76 8.13 -2.38 -0.02 0.74 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.66 8.07 -2.39 -0.02 0.64 16 31 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.14 0.88 7.86 -2.39 -0.02 0.86 16 33 H 0.07 1.09 7.86 -2.39 -0.02 1.08 16 34 H 0.10 1.66 6.67 -2.39 -0.02 1.64 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.35 11.71 8.58 -89.69 -0.77 10.94 16 37 H 0.36 10.54 7.55 -89.70 -0.68 9.86 16 38 H 0.07 2.43 7.78 -2.39 -0.02 2.42 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.02 0.86 6.30 -2.39 -0.02 0.84 16 41 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 42 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 43 H 0.09 1.96 7.68 -2.39 -0.02 1.94 16 44 H 0.06 2.08 6.33 -2.39 -0.02 2.07 16 Total: -1.00 -78.93 356.98 2.45 -76.48 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.49 Total: 28.28 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 5.21 Total: 3.64 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -3.90 Total: -105.85 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -0.26 Total: -46.30 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.88 Total: 43.75 kcal Total: -78.93 2.45 -76.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424165162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.150 kcal (2) G-P(sol) polarization free energy of solvation -78.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds