Wall clock time and date at job start Tue Mar 31 2020 04:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00238 * 2 1 4 4 H 1.48505 * 109.46780 * 240.00036 * 3 2 1 5 5 H 1.48496 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47185 * 120.00296 * 3 2 1 7 7 C 1.37880 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 186.73697 * 7 2 1 9 9 C 1.50705 * 119.99680 * 6.46586 * 7 2 1 10 10 C 1.53005 * 115.54733 * 275.12914 * 9 7 2 11 11 N 1.46507 * 109.47044 * 294.83359 * 10 9 7 12 12 C 1.34769 * 119.99724 * 177.47198 * 11 10 9 13 13 O 1.21586 * 120.00349 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99794 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00194 * 179.97438 * 14 12 11 16 16 H 1.09004 * 109.47108 * 324.99931 * 15 14 12 17 17 C 1.52995 * 109.47146 * 84.99791 * 15 14 12 18 18 O 1.42904 * 109.47042 * 65.00085 * 17 15 14 19 19 C 1.52993 * 109.47367 * 205.00348 * 15 14 12 20 20 H 1.09004 * 109.82821 * 180.56828 * 19 15 14 21 21 C 1.54387 * 109.83330 * 59.58456 * 19 15 14 22 22 C 1.55302 * 102.25299 * 219.13050 * 21 19 15 23 23 C 1.54947 * 100.94362 * 34.13564 * 22 21 19 24 24 O 1.43238 * 109.82823 * 301.45442 * 19 15 14 25 25 C 1.52992 * 117.50070 * 129.46073 * 9 7 2 26 26 C 1.52996 * 117.50284 * 60.80048 * 9 7 2 27 27 H 0.97001 * 120.00055 * 5.02186 * 1 2 3 28 28 H 1.08999 * 109.46731 * 54.82734 * 10 9 7 29 29 H 1.08998 * 109.47105 * 174.83416 * 10 9 7 30 30 H 0.96997 * 119.99866 * 357.47194 * 11 10 9 31 31 H 0.97005 * 120.00147 * 0.02562 * 14 12 11 32 32 H 1.09001 * 109.47352 * 185.00325 * 17 15 14 33 33 H 1.08999 * 109.47296 * 305.00801 * 17 15 14 34 34 H 0.96695 * 113.99928 * 179.97438 * 18 17 15 35 35 H 1.08992 * 110.84421 * 337.32077 * 21 19 15 36 36 H 1.09003 * 110.84234 * 100.94140 * 21 19 15 37 37 H 1.08998 * 111.13020 * 276.21550 * 22 21 19 38 38 H 1.08999 * 111.16103 * 152.06650 * 22 21 19 39 39 H 1.08998 * 110.31025 * 204.64094 * 23 22 21 40 40 H 1.09003 * 110.31132 * 82.46688 * 23 22 21 41 41 H 1.09009 * 117.49956 * 0.02562 * 25 9 7 42 42 H 1.09003 * 117.49814 * 145.01484 * 25 9 7 43 43 H 1.08999 * 117.49965 * 214.98464 * 26 9 7 44 44 H 1.09000 * 117.49712 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0789 -1.1973 0.1103 9 6 1.2581 -2.4951 -0.1459 10 6 0.6907 -3.0796 1.1493 11 7 1.7921 -3.4496 2.0418 12 6 1.5290 -3.9410 3.2688 13 8 0.3777 -4.0770 3.6353 14 7 2.5422 -4.2819 4.0896 15 6 2.2563 -4.8156 5.4237 16 1 1.3655 -4.3324 5.8251 17 6 2.0195 -6.3242 5.3295 18 8 3.2245 -6.9704 4.9140 19 6 3.4448 -4.5426 6.3477 20 1 3.2422 -4.9464 7.3397 21 6 3.6976 -3.0224 6.4406 22 6 5.2487 -2.9457 6.4417 23 6 5.6027 -4.1341 5.5125 24 8 4.6272 -5.1459 5.8096 25 6 1.7549 -3.4791 -1.2068 26 6 0.4522 -2.7068 -1.4290 27 1 -0.4850 0.8368 -0.0735 28 1 0.0611 -2.3362 1.6381 29 1 0.0968 -3.9641 0.9191 30 1 2.7105 -3.3408 1.7495 31 1 3.4608 -4.1731 3.7974 32 1 1.7199 -6.7066 6.3052 33 1 1.2314 -6.5236 4.6034 34 1 3.1478 -7.9309 4.8331 35 1 3.2844 -2.5068 5.5738 36 1 3.2885 -2.6170 7.3660 37 1 5.6490 -3.0981 7.4440 38 1 5.5964 -2.0018 6.0219 39 1 6.6058 -4.4998 5.7314 40 1 5.5287 -3.8325 4.4676 41 1 2.6220 -3.1856 -1.7988 42 1 1.6773 -4.5429 -0.9823 43 1 -0.4821 -3.2627 -1.3506 44 1 0.4615 -1.9048 -2.1672 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431048855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:25 Heat of formation + Delta-G solvation = -101.834422 kcal Electronic energy + Delta-G solvation = -25436.310479 eV Core-core repulsion = 21775.545205 eV Total energy + Delta-G solvation = -3660.765274 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.22032 -38.86260 -36.92629 -36.44087 -34.08586 -33.20040 -32.06546 -31.95864 -30.40245 -27.56898 -26.07441 -25.02627 -23.27367 -21.67447 -21.24953 -20.73919 -20.05651 -19.34934 -18.00547 -17.09676 -16.74573 -16.42527 -15.93625 -15.33826 -15.04698 -14.67668 -14.40819 -14.20599 -13.95290 -13.76887 -13.44310 -13.31957 -12.99301 -12.62064 -12.39908 -12.09378 -11.76440 -11.72625 -11.54414 -11.25143 -11.05050 -10.99678 -10.88040 -10.79182 -10.54131 -10.25499 -9.90625 -9.70436 -9.56672 -9.40615 -8.93556 -8.72864 -8.46387 -8.24833 -7.91764 -6.07299 -4.15200 3.25207 3.27001 3.33321 3.34368 3.74575 3.86475 4.36339 4.38036 4.43646 4.53494 4.77877 4.86973 5.05828 5.10386 5.21862 5.29521 5.36848 5.39974 5.46284 5.58136 5.66704 5.67551 5.73371 5.84278 5.88096 6.05019 6.07973 6.36511 6.49628 6.61848 6.71595 6.86736 6.88707 7.04670 7.10046 7.37668 7.45020 7.50603 7.66763 7.78185 7.82272 8.35548 8.72544 8.85665 9.26572 9.51648 11.01340 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.004423 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.952831 B = 6329.484027 C = 7287.842171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.497 4.497 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.183 3.817 11 N -0.720 5.720 12 C 0.698 3.302 13 O -0.608 6.608 14 N -0.736 5.736 15 C 0.158 3.842 16 H 0.105 0.895 17 C 0.066 3.934 18 O -0.546 6.546 19 C 0.079 3.921 20 H 0.087 0.913 21 C -0.157 4.157 22 C -0.156 4.156 23 C 0.044 3.956 24 O -0.345 6.345 25 C -0.210 4.210 26 C -0.148 4.148 27 H 0.262 0.738 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.394 0.606 31 H 0.395 0.605 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.366 0.634 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.699 -9.273 12.198 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.535 4.535 8 H 0.076 0.924 9 C 0.027 3.973 10 C 0.059 3.941 11 N -0.371 5.371 12 C 0.398 3.602 13 O -0.488 6.488 14 N -0.393 5.393 15 C 0.051 3.949 16 H 0.123 0.877 17 C -0.013 4.013 18 O -0.349 6.349 19 C 0.021 3.979 20 H 0.105 0.895 21 C -0.194 4.194 22 C -0.194 4.194 23 C -0.033 4.033 24 O -0.263 6.263 25 C -0.247 4.247 26 C -0.186 4.186 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.228 0.772 31 H 0.230 0.770 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.210 0.790 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.675 -8.836 12.539 17.153 hybrid contribution 0.900 0.773 -0.336 1.233 sum 8.575 -8.063 12.204 16.955 Atomic orbital electron populations 1.70002 1.05841 1.27041 1.48041 1.24958 0.94764 0.98852 0.94437 0.86733 0.79692 0.83413 0.78559 1.20276 1.21291 1.20307 1.20301 0.92632 0.88774 1.51782 0.92360 1.19053 0.98530 0.93881 0.85861 1.20848 0.86831 0.96611 0.89817 1.45117 1.11078 1.67088 1.13866 1.16066 0.84634 0.78422 0.81052 1.90854 1.19448 1.62478 1.76009 1.44940 1.08551 1.70197 1.15573 1.21235 0.98230 0.92137 0.83268 0.87689 1.22550 0.87445 0.93237 0.98100 1.86708 1.33962 1.23089 1.91114 1.22945 0.86264 0.92590 0.96124 0.89510 1.23240 0.96198 0.95981 1.04000 1.23260 0.95683 0.99727 1.00713 1.23417 0.93348 0.88218 0.98273 1.88676 1.24078 1.30036 1.83536 1.23015 0.98529 0.95690 1.07512 1.22482 0.92388 1.01113 1.02641 0.92854 0.91012 0.95016 0.77241 0.77031 0.93744 0.93177 0.78956 0.89489 0.90072 0.90654 0.89966 0.90012 0.92406 0.90389 0.91635 0.91667 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.37 12.94 55.43 0.72 -23.65 16 2 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 3 Si 0.89 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.50 -12.84 8.68 -34.44 -0.30 -13.14 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.06 16 9 C 0.03 0.65 1.36 -155.66 -0.21 0.44 16 10 C 0.18 4.25 5.50 -4.04 -0.02 4.22 16 11 N -0.72 -14.49 5.47 -65.22 -0.36 -14.85 16 12 C 0.70 13.70 8.53 -86.92 -0.74 12.96 16 13 O -0.61 -14.00 16.01 5.29 0.08 -13.92 16 14 N -0.74 -11.26 4.06 -58.68 -0.24 -11.50 16 15 C 0.16 2.10 2.27 -67.93 -0.15 1.95 16 16 H 0.11 1.48 7.58 -51.93 -0.39 1.09 16 17 C 0.07 0.83 6.85 37.15 0.25 1.08 16 18 O -0.55 -6.73 11.45 -57.60 -0.66 -7.39 16 19 C 0.08 0.88 3.27 -26.01 -0.08 0.80 16 20 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.16 -1.61 6.43 -24.78 -0.16 -1.76 16 22 C -0.16 -1.39 7.16 -24.48 -0.18 -1.57 16 23 C 0.04 0.45 7.40 38.19 0.28 0.73 16 24 O -0.34 -4.21 8.49 -57.60 -0.49 -4.70 16 25 C -0.21 -4.41 9.96 -26.70 -0.27 -4.67 16 26 C -0.15 -3.40 9.45 -26.70 -0.25 -3.65 16 27 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 28 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 29 H 0.03 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.39 7.31 8.43 -40.82 -0.34 6.97 16 31 H 0.40 5.63 7.21 -40.82 -0.29 5.33 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.37 3.06 9.12 45.56 0.42 3.47 16 35 H 0.09 1.07 7.16 -51.93 -0.37 0.70 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.59 7.53 -51.93 -0.39 0.20 16 41 H 0.08 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -31.34 360.48 -8.88 -40.22 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -6.42 Total: 15.52 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.92 Total: -0.74 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.12 Total: -50.00 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -1.06 Total: -26.00 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.34 -8.88 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431048855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.616 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds