Wall clock time and date at job start Tue Mar 31 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00238 * 2 1 4 4 H 1.48505 * 109.46780 * 240.00036 * 3 2 1 5 5 H 1.48496 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47185 * 120.00296 * 3 2 1 7 7 C 1.37880 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 186.73697 * 7 2 1 9 9 C 1.50705 * 119.99680 * 6.46586 * 7 2 1 10 10 C 1.53005 * 115.54733 * 275.12914 * 9 7 2 11 11 N 1.46507 * 109.47044 * 294.83359 * 10 9 7 12 12 C 1.34769 * 119.99724 * 177.47198 * 11 10 9 13 13 O 1.21586 * 120.00349 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99794 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00194 * 179.97438 * 14 12 11 16 16 H 1.09004 * 109.47108 * 324.99931 * 15 14 12 17 17 C 1.52995 * 109.47146 * 84.99791 * 15 14 12 18 18 O 1.42904 * 109.47042 * 65.00085 * 17 15 14 19 19 C 1.52993 * 109.47367 * 205.00348 * 15 14 12 20 20 H 1.09004 * 109.82821 * 180.56828 * 19 15 14 21 21 C 1.54387 * 109.83330 * 59.58456 * 19 15 14 22 22 C 1.55302 * 102.25299 * 219.13050 * 21 19 15 23 23 C 1.54947 * 100.94362 * 34.13564 * 22 21 19 24 24 O 1.43238 * 109.82823 * 301.45442 * 19 15 14 25 25 C 1.52992 * 117.50070 * 129.46073 * 9 7 2 26 26 C 1.52996 * 117.50284 * 60.80048 * 9 7 2 27 27 H 0.97001 * 120.00055 * 5.02186 * 1 2 3 28 28 H 1.08999 * 109.46731 * 54.82734 * 10 9 7 29 29 H 1.08998 * 109.47105 * 174.83416 * 10 9 7 30 30 H 0.96997 * 119.99866 * 357.47194 * 11 10 9 31 31 H 0.97005 * 120.00147 * 0.02562 * 14 12 11 32 32 H 1.09001 * 109.47352 * 185.00325 * 17 15 14 33 33 H 1.08999 * 109.47296 * 305.00801 * 17 15 14 34 34 H 0.96695 * 113.99928 * 179.97438 * 18 17 15 35 35 H 1.08992 * 110.84421 * 337.32077 * 21 19 15 36 36 H 1.09003 * 110.84234 * 100.94140 * 21 19 15 37 37 H 1.08998 * 111.13020 * 276.21550 * 22 21 19 38 38 H 1.08999 * 111.16103 * 152.06650 * 22 21 19 39 39 H 1.08998 * 110.31025 * 204.64094 * 23 22 21 40 40 H 1.09003 * 110.31132 * 82.46688 * 23 22 21 41 41 H 1.09009 * 117.49956 * 0.02562 * 25 9 7 42 42 H 1.09003 * 117.49814 * 145.01484 * 25 9 7 43 43 H 1.08999 * 117.49965 * 214.98464 * 26 9 7 44 44 H 1.09000 * 117.49712 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0789 -1.1973 0.1103 9 6 1.2581 -2.4951 -0.1459 10 6 0.6907 -3.0796 1.1493 11 7 1.7921 -3.4496 2.0418 12 6 1.5290 -3.9410 3.2688 13 8 0.3777 -4.0770 3.6353 14 7 2.5422 -4.2819 4.0896 15 6 2.2563 -4.8156 5.4237 16 1 1.3655 -4.3324 5.8251 17 6 2.0195 -6.3242 5.3295 18 8 3.2245 -6.9704 4.9140 19 6 3.4448 -4.5426 6.3477 20 1 3.2422 -4.9464 7.3397 21 6 3.6976 -3.0224 6.4406 22 6 5.2487 -2.9457 6.4417 23 6 5.6027 -4.1341 5.5125 24 8 4.6272 -5.1459 5.8096 25 6 1.7549 -3.4791 -1.2068 26 6 0.4522 -2.7068 -1.4290 27 1 -0.4850 0.8368 -0.0735 28 1 0.0611 -2.3362 1.6381 29 1 0.0968 -3.9641 0.9191 30 1 2.7105 -3.3408 1.7495 31 1 3.4608 -4.1731 3.7974 32 1 1.7199 -6.7066 6.3052 33 1 1.2314 -6.5236 4.6034 34 1 3.1478 -7.9309 4.8331 35 1 3.2844 -2.5068 5.5738 36 1 3.2885 -2.6170 7.3660 37 1 5.6490 -3.0981 7.4440 38 1 5.5964 -2.0018 6.0219 39 1 6.6058 -4.4998 5.7314 40 1 5.5287 -3.8325 4.4676 41 1 2.6220 -3.1856 -1.7988 42 1 1.6773 -4.5429 -0.9823 43 1 -0.4821 -3.2627 -1.3506 44 1 0.4615 -1.9048 -2.1672 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431048855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:24 Heat of formation + Delta-G solvation = -124.359441 kcal Electronic energy + Delta-G solvation = -25437.287237 eV Core-core repulsion = 21775.545205 eV Total energy + Delta-G solvation = -3661.742032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.40430 -40.15344 -38.55946 -37.59566 -35.32912 -34.91175 -33.96017 -32.88188 -31.52872 -28.56040 -27.87955 -26.88318 -24.23977 -22.98636 -22.45104 -22.05045 -21.38653 -21.14117 -19.47490 -18.17389 -18.14073 -17.59932 -17.18813 -16.70194 -16.46423 -16.40350 -15.78236 -15.68921 -15.19607 -15.06491 -14.78656 -14.42629 -14.37116 -13.92007 -13.73523 -13.45875 -13.31418 -13.01045 -12.97369 -12.76283 -12.54892 -12.38510 -12.03889 -12.01537 -11.85357 -11.65549 -11.52048 -11.30717 -10.82022 -10.80978 -10.45681 -10.41130 -10.15983 -10.03868 -9.55711 -8.09583 -6.22167 1.43397 1.44473 1.51386 1.83052 2.25510 2.43632 2.95379 3.19659 3.31381 3.47785 3.56290 3.61954 3.73357 4.03329 4.23987 4.24658 4.27068 4.38906 4.48980 4.53995 4.56940 4.66534 4.70506 4.74118 4.74915 4.88875 4.94575 4.99153 5.00148 5.03280 5.06123 5.27324 5.28432 5.58528 5.60036 5.63079 5.73325 5.79513 6.14046 6.22292 6.37583 6.84691 7.01627 7.22771 7.47388 7.69820 8.98755 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.004423 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.952831 B = 6329.484027 C = 7287.842171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.004 3.996 10 C 0.201 3.799 11 N -0.716 5.716 12 C 0.697 3.303 13 O -0.644 6.644 14 N -0.717 5.717 15 C 0.148 3.852 16 H 0.094 0.906 17 C 0.073 3.927 18 O -0.557 6.557 19 C 0.086 3.914 20 H 0.108 0.892 21 C -0.157 4.157 22 C -0.148 4.148 23 C 0.038 3.962 24 O -0.360 6.360 25 C -0.176 4.176 26 C -0.157 4.157 27 H 0.258 0.742 28 H 0.027 0.973 29 H 0.030 0.970 30 H 0.403 0.597 31 H 0.403 0.597 32 H 0.072 0.928 33 H 0.024 0.976 34 H 0.383 0.617 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.930 -9.904 13.179 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.003 3.997 10 C 0.076 3.924 11 N -0.369 5.369 12 C 0.397 3.603 13 O -0.528 6.528 14 N -0.373 5.373 15 C 0.042 3.958 16 H 0.112 0.888 17 C -0.007 4.007 18 O -0.363 6.363 19 C 0.027 3.973 20 H 0.126 0.874 21 C -0.195 4.195 22 C -0.185 4.185 23 C -0.039 4.039 24 O -0.279 6.279 25 C -0.213 4.213 26 C -0.196 4.196 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.238 0.762 31 H 0.238 0.762 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.231 0.769 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.972 -9.498 13.535 19.309 hybrid contribution 0.231 0.898 -0.613 1.111 sum 10.203 -8.600 12.922 18.575 Atomic orbital electron populations 1.70133 1.07245 1.27453 1.49621 1.25679 0.95405 1.01994 0.94461 0.85780 0.78418 0.79582 0.78818 1.19458 1.21735 1.19748 1.20614 0.92907 0.89709 1.50717 0.92013 1.19077 0.99753 0.94503 0.86354 1.20399 0.87117 0.95116 0.89789 1.44915 1.10740 1.67283 1.13962 1.16200 0.84853 0.78203 0.81094 1.90825 1.21274 1.63962 1.76691 1.44819 1.07835 1.68927 1.15711 1.21507 0.99203 0.92730 0.82329 0.88807 1.22420 0.86803 0.92697 0.98773 1.86656 1.33661 1.24796 1.91191 1.22953 0.85080 0.93174 0.96068 0.87397 1.23226 0.97370 0.95231 1.03691 1.23241 0.94407 0.99479 1.01391 1.23561 0.93667 0.88426 0.98242 1.88657 1.24508 1.31040 1.83676 1.22995 0.97379 0.96181 1.04774 1.22428 0.93820 1.01420 1.01903 0.93250 0.95416 0.95189 0.76187 0.76168 0.90971 0.95790 0.76924 0.91944 0.88518 0.89016 0.89478 0.88509 0.93079 0.89493 0.89465 0.91107 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.73 12.94 21.45 0.28 -51.45 16 2 C 0.03 1.35 5.39 84.66 0.46 1.80 16 3 Si 0.95 42.28 29.55 68.60 2.03 44.31 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.50 -25.80 8.68 25.60 0.22 -25.58 16 8 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 9 C 0.00 0.19 1.36 -52.93 -0.07 0.11 16 10 C 0.20 9.52 5.50 86.38 0.48 9.99 16 11 N -0.72 -28.97 5.47 -478.53 -2.62 -31.59 16 12 C 0.70 27.64 8.53 179.06 1.53 29.17 16 13 O -0.64 -30.49 16.01 -3.99 -0.06 -30.55 16 14 N -0.72 -21.68 4.06 -457.82 -1.86 -23.54 16 15 C 0.15 3.81 2.27 44.99 0.10 3.91 16 16 H 0.09 2.64 7.58 -2.38 -0.02 2.62 16 17 C 0.07 1.72 6.85 71.98 0.49 2.22 16 18 O -0.56 -12.71 11.45 -127.60 -1.46 -14.17 16 19 C 0.09 1.73 3.27 31.06 0.10 1.83 16 20 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 21 C -0.16 -2.95 6.43 31.86 0.20 -2.75 16 22 C -0.15 -2.26 7.16 32.05 0.23 -2.03 16 23 C 0.04 0.67 7.40 72.65 0.54 1.21 16 24 O -0.36 -7.97 8.49 -127.60 -1.08 -9.05 16 25 C -0.18 -7.08 9.96 30.61 0.30 -6.77 16 26 C -0.16 -7.22 9.45 30.61 0.29 -6.93 16 27 H 0.26 14.26 8.32 -92.71 -0.77 13.48 16 28 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.03 1.41 8.09 -2.39 -0.02 1.39 16 30 H 0.40 14.71 8.43 -92.71 -0.78 13.93 16 31 H 0.40 11.12 7.21 -92.70 -0.67 10.45 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.38 5.64 9.12 -74.06 -0.68 4.97 16 35 H 0.06 1.49 7.16 -2.39 -0.02 1.47 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 0.97 7.53 -2.39 -0.02 0.95 16 41 H 0.09 3.35 8.14 -2.38 -0.02 3.33 16 42 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 44 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -67.70 360.48 -1.01 -68.71 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: -1.10 Total: 41.15 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 4.87 Total: 6.19 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -4.20 Total: -106.58 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -2.61 Total: -53.77 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -67.70 -1.01 -68.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431048855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.652 kcal (2) G-P(sol) polarization free energy of solvation -67.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds