Wall clock time and date at job start Tue Mar 31 2020 04:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99738 * 2 1 4 4 C 1.52998 * 109.47244 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47222 * 64.99535 * 4 3 2 6 6 C 1.36120 * 120.00230 * 270.00191 * 5 4 3 7 7 H 1.08007 * 119.99832 * 134.74983 * 6 5 4 8 8 C 1.39586 * 120.00184 * 314.75313 * 6 5 4 9 9 N 1.31009 * 119.99800 * 1.82584 * 8 6 5 10 10 Si 1.86799 * 119.99976 * 181.82980 * 8 6 5 11 11 H 1.48508 * 109.47272 * 89.99683 * 10 8 6 12 12 H 1.48491 * 109.47388 * 210.00089 * 10 8 6 13 13 H 1.48506 * 109.47074 * 330.00019 * 10 8 6 14 14 C 1.34783 * 119.99801 * 90.00670 * 5 4 3 15 15 O 1.21501 * 119.99991 * 5.07859 * 14 5 4 16 16 C 1.48825 * 119.99829 * 185.08385 * 14 5 4 17 17 O 1.21445 * 120.00171 * 275.73934 * 16 14 5 18 18 N 1.34773 * 120.00569 * 95.74389 * 16 14 5 19 19 C 1.46930 * 120.62577 * 354.23050 * 18 16 14 20 20 C 1.53621 * 108.54274 * 126.36976 * 19 18 16 21 21 C 1.53039 * 109.24580 * 54.85549 * 20 19 18 22 22 C 1.52999 * 109.45121 * 178.49671 * 21 20 19 23 23 C 1.53039 * 109.53591 * 298.51307 * 21 20 19 24 24 C 1.46930 * 120.63578 * 174.50896 * 18 16 14 25 25 H 1.08991 * 109.46896 * 299.99807 * 1 2 3 26 26 H 1.08999 * 109.47002 * 59.99890 * 1 2 3 27 27 H 1.08996 * 109.46431 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47452 * 60.00122 * 3 2 1 29 29 H 1.09002 * 109.47339 * 299.99826 * 3 2 1 30 30 H 1.09005 * 109.46832 * 305.00364 * 4 3 2 31 31 H 1.08990 * 109.47715 * 185.00314 * 4 3 2 32 32 H 0.97004 * 119.99898 * 185.00585 * 9 8 6 33 33 H 1.09003 * 109.58289 * 246.20248 * 19 18 16 34 34 H 1.08997 * 109.58459 * 6.62262 * 19 18 16 35 35 H 1.09001 * 109.63437 * 294.86138 * 20 19 18 36 36 H 1.09008 * 109.43238 * 174.72414 * 20 19 18 37 37 H 1.09002 * 109.46174 * 58.52617 * 21 20 19 38 38 H 1.09002 * 109.46847 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47103 * 300.05974 * 22 21 20 40 40 H 1.08994 * 109.46775 * 60.06115 * 22 21 20 41 41 H 1.09001 * 109.49323 * 301.41049 * 23 21 20 42 42 H 1.09001 * 109.49720 * 181.31616 * 23 21 20 43 43 H 1.08996 * 109.58288 * 353.37309 * 24 18 16 44 44 H 1.08999 * 109.58159 * 113.65622 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0961 -0.7888 -1.3363 7 1 3.7070 -1.3134 -2.1964 8 6 4.7225 -1.4985 -0.3104 9 7 5.1626 -0.8664 0.7494 10 14 4.9333 -3.3494 -0.4487 11 1 6.2274 -3.6521 -1.1115 12 1 4.9193 -3.9520 0.9084 13 1 3.8208 -3.9155 -1.2532 14 6 4.2616 1.3338 -2.3218 15 8 4.2437 2.5445 -2.2212 16 6 4.5991 0.7003 -3.6255 17 8 5.7370 0.3395 -3.8488 18 7 3.6420 0.5271 -4.5584 19 6 2.2385 0.8415 -4.2583 20 6 1.7136 1.8065 -5.3322 21 6 1.9376 1.1918 -6.7157 22 6 1.3826 2.1324 -7.7871 23 6 3.4361 0.9836 -6.9466 24 6 3.9814 0.0145 -5.8929 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5683 0.8409 31 1 3.9785 2.1765 0.0890 32 1 5.6616 -1.3470 1.4284 33 1 1.6488 -0.0752 -4.2671 34 1 2.1712 1.3123 -3.2775 35 1 2.2469 2.7547 -5.2647 36 1 0.6480 1.9761 -5.1777 37 1 1.4245 0.2319 -6.7740 38 1 1.5415 1.6947 -8.7726 39 1 0.3153 2.2808 -7.6227 40 1 1.8960 3.0921 -7.7292 41 1 3.9531 1.9396 -6.8640 42 1 3.5965 0.5675 -7.9412 43 1 5.0643 -0.0605 -5.9910 44 1 3.5329 -0.9693 -6.0313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457209341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:22 Heat of formation + Delta-G solvation = -112.973698 kcal Electronic energy + Delta-G solvation = -26347.256417 eV Core-core repulsion = 22686.008108 eV Total energy + Delta-G solvation = -3661.248309 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.02139 -38.33424 -37.22162 -36.61609 -34.84619 -33.60195 -31.66968 -31.01094 -29.45312 -28.18062 -25.90968 -25.10725 -24.18468 -23.17320 -22.48279 -20.96357 -19.86597 -18.85450 -17.66594 -16.42222 -16.06255 -15.49594 -15.38231 -15.16508 -14.62949 -14.58748 -14.36433 -14.20137 -14.10492 -13.81298 -13.44043 -13.29415 -12.84686 -12.57344 -12.40250 -11.96354 -11.83161 -11.78478 -11.65919 -11.27710 -11.11970 -11.05120 -10.96258 -10.86272 -10.80997 -10.46887 -10.37406 -10.32232 -10.15487 -10.07020 -9.05909 -9.00223 -8.35212 -8.23841 -7.57425 -6.31057 -4.13365 3.10904 3.16603 3.25365 3.29046 3.31820 3.77404 4.18957 4.48480 4.62095 4.77315 4.79897 4.89919 5.03611 5.21628 5.40790 5.44563 5.56923 5.60721 5.63405 5.65249 5.67858 5.76831 5.80774 5.91131 5.96457 5.98912 6.01912 6.05779 6.11622 6.16023 6.17399 6.23106 6.30176 6.46992 6.66752 6.93444 7.28796 7.55412 7.75668 7.80358 7.96826 8.33414 8.72774 9.01186 9.28834 9.74203 10.68100 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.006039 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.832391 B = 4635.317046 C = 5358.107102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.056 3.944 4 C 0.096 3.904 5 N -0.400 5.400 6 C -0.327 4.327 7 H 0.085 0.915 8 C 0.059 3.941 9 N -0.865 5.865 10 Si 0.922 3.078 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.462 3.538 15 O -0.589 6.589 16 C 0.544 3.456 17 O -0.525 6.525 18 N -0.607 5.607 19 C 0.115 3.885 20 C -0.129 4.129 21 C -0.092 4.092 22 C -0.145 4.145 23 C -0.128 4.128 24 C 0.111 3.889 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.034 0.966 30 H 0.138 0.862 31 H 0.072 0.928 32 H 0.273 0.727 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 1.484 -8.970 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C -0.022 4.022 4 C -0.027 4.027 5 N -0.118 5.118 6 C -0.456 4.456 7 H 0.102 0.898 8 C -0.147 4.147 9 N -0.502 5.502 10 Si 0.748 3.252 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.246 3.754 15 O -0.475 6.475 16 C 0.329 3.671 17 O -0.399 6.399 18 N -0.343 5.343 19 C -0.008 4.008 20 C -0.167 4.167 21 C -0.111 4.111 22 C -0.202 4.202 23 C -0.166 4.166 24 C -0.011 4.011 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.156 0.844 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.666 1.641 -8.761 13.148 hybrid contribution -0.234 -0.680 -0.005 0.719 sum -9.900 0.961 -8.766 13.258 Atomic orbital electron populations 1.22650 0.83585 1.01745 0.98748 1.88197 1.17151 1.27433 1.94980 1.22993 0.96383 0.84413 0.98415 1.21968 0.89277 0.99784 0.91630 1.43052 1.53559 1.06392 1.08770 1.19191 1.38224 0.80766 1.07399 0.89768 1.25470 0.94170 1.00343 0.94712 1.69307 1.34357 1.37377 1.09152 0.86012 0.79043 0.82483 0.77679 1.20109 1.20724 1.19311 1.20027 0.82005 0.87131 0.86210 1.90657 1.58065 1.13548 1.85262 1.20440 0.84950 0.76633 0.85043 1.90679 1.20832 1.48756 1.79597 1.48060 1.07656 1.65720 1.12882 1.21709 0.81392 0.98592 0.99100 1.22066 1.01086 0.99383 0.94197 1.21127 0.95938 0.99226 0.94808 1.21815 1.00631 0.99558 0.98218 1.21986 0.95663 1.00477 0.98515 1.21527 1.02117 0.96147 0.81326 0.95171 0.95110 0.90427 0.93964 0.94750 0.84443 0.90983 0.91632 0.91353 0.89736 0.91196 0.91039 0.91078 0.92832 0.92783 0.92718 0.91482 0.91008 0.89104 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.36 -7.32 10.17 -35.23 -0.36 -7.68 16 3 C 0.06 1.11 6.28 37.16 0.23 1.34 16 4 C 0.10 2.28 5.46 -4.04 -0.02 2.26 16 5 N -0.40 -10.26 2.48 -115.58 -0.29 -10.55 16 6 C -0.33 -8.63 8.02 -15.15 -0.12 -8.76 16 7 H 0.08 2.22 7.48 -52.48 -0.39 1.82 16 8 C 0.06 1.56 5.38 -17.40 -0.09 1.46 16 9 N -0.87 -23.15 10.76 55.53 0.60 -22.56 16 10 Si 0.92 20.68 29.56 -169.99 -5.02 15.66 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 14 C 0.46 11.88 5.38 -11.88 -0.06 11.81 16 15 O -0.59 -15.89 16.66 5.37 0.09 -15.80 16 16 C 0.54 13.08 6.04 -11.88 -0.07 13.01 16 17 O -0.52 -13.98 16.54 5.41 0.09 -13.89 16 18 N -0.61 -11.48 2.97 -173.24 -0.51 -11.99 16 19 C 0.12 1.87 6.38 -3.49 -0.02 1.85 16 20 C -0.13 -1.66 5.38 -26.39 -0.14 -1.80 16 21 C -0.09 -1.02 2.68 -90.58 -0.24 -1.26 16 22 C -0.14 -1.33 9.19 37.16 0.34 -0.99 16 23 C -0.13 -1.55 5.36 -26.61 -0.14 -1.70 16 24 C 0.11 1.71 6.41 -3.71 -0.02 1.69 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.14 3.52 5.20 -51.93 -0.27 3.25 16 31 H 0.07 1.72 7.36 -51.93 -0.38 1.33 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.58 6.32 -51.93 -0.33 1.25 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.52 7.04 -51.93 -0.37 1.16 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -31.89 357.26 -6.50 -38.38 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.21 Total: 2.57 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: 0.74 Total: 20.47 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.20 Total: -45.09 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.18 Total: -37.37 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.89 -6.50 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.593 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds