Wall clock time and date at job start Tue Mar 31 2020 04:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99738 * 2 1 4 4 C 1.52998 * 109.47244 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47222 * 64.99535 * 4 3 2 6 6 C 1.36120 * 120.00230 * 270.00191 * 5 4 3 7 7 H 1.08007 * 119.99832 * 134.74983 * 6 5 4 8 8 C 1.39586 * 120.00184 * 314.75313 * 6 5 4 9 9 N 1.31009 * 119.99800 * 1.82584 * 8 6 5 10 10 Si 1.86799 * 119.99976 * 181.82980 * 8 6 5 11 11 H 1.48508 * 109.47272 * 89.99683 * 10 8 6 12 12 H 1.48491 * 109.47388 * 210.00089 * 10 8 6 13 13 H 1.48506 * 109.47074 * 330.00019 * 10 8 6 14 14 C 1.34783 * 119.99801 * 90.00670 * 5 4 3 15 15 O 1.21501 * 119.99991 * 5.07859 * 14 5 4 16 16 C 1.48825 * 119.99829 * 185.08385 * 14 5 4 17 17 O 1.21445 * 120.00171 * 275.73934 * 16 14 5 18 18 N 1.34773 * 120.00569 * 95.74389 * 16 14 5 19 19 C 1.46930 * 120.62577 * 354.23050 * 18 16 14 20 20 C 1.53621 * 108.54274 * 126.36976 * 19 18 16 21 21 C 1.53039 * 109.24580 * 54.85549 * 20 19 18 22 22 C 1.52999 * 109.45121 * 178.49671 * 21 20 19 23 23 C 1.53039 * 109.53591 * 298.51307 * 21 20 19 24 24 C 1.46930 * 120.63578 * 174.50896 * 18 16 14 25 25 H 1.08991 * 109.46896 * 299.99807 * 1 2 3 26 26 H 1.08999 * 109.47002 * 59.99890 * 1 2 3 27 27 H 1.08996 * 109.46431 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47452 * 60.00122 * 3 2 1 29 29 H 1.09002 * 109.47339 * 299.99826 * 3 2 1 30 30 H 1.09005 * 109.46832 * 305.00364 * 4 3 2 31 31 H 1.08990 * 109.47715 * 185.00314 * 4 3 2 32 32 H 0.97004 * 119.99898 * 185.00585 * 9 8 6 33 33 H 1.09003 * 109.58289 * 246.20248 * 19 18 16 34 34 H 1.08997 * 109.58459 * 6.62262 * 19 18 16 35 35 H 1.09001 * 109.63437 * 294.86138 * 20 19 18 36 36 H 1.09008 * 109.43238 * 174.72414 * 20 19 18 37 37 H 1.09002 * 109.46174 * 58.52617 * 21 20 19 38 38 H 1.09002 * 109.46847 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47103 * 300.05974 * 22 21 20 40 40 H 1.08994 * 109.46775 * 60.06115 * 22 21 20 41 41 H 1.09001 * 109.49323 * 301.41049 * 23 21 20 42 42 H 1.09001 * 109.49720 * 181.31616 * 23 21 20 43 43 H 1.08996 * 109.58288 * 353.37309 * 24 18 16 44 44 H 1.08999 * 109.58159 * 113.65622 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0961 -0.7888 -1.3363 7 1 3.7070 -1.3134 -2.1964 8 6 4.7225 -1.4985 -0.3104 9 7 5.1626 -0.8664 0.7494 10 14 4.9333 -3.3494 -0.4487 11 1 6.2274 -3.6521 -1.1115 12 1 4.9193 -3.9520 0.9084 13 1 3.8208 -3.9155 -1.2532 14 6 4.2616 1.3338 -2.3218 15 8 4.2437 2.5445 -2.2212 16 6 4.5991 0.7003 -3.6255 17 8 5.7370 0.3395 -3.8488 18 7 3.6420 0.5271 -4.5584 19 6 2.2385 0.8415 -4.2583 20 6 1.7136 1.8065 -5.3322 21 6 1.9376 1.1918 -6.7157 22 6 1.3826 2.1324 -7.7871 23 6 3.4361 0.9836 -6.9466 24 6 3.9814 0.0145 -5.8929 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5683 0.8409 31 1 3.9785 2.1765 0.0890 32 1 5.6616 -1.3470 1.4284 33 1 1.6488 -0.0752 -4.2671 34 1 2.1712 1.3123 -3.2775 35 1 2.2469 2.7547 -5.2647 36 1 0.6480 1.9761 -5.1777 37 1 1.4245 0.2319 -6.7740 38 1 1.5415 1.6947 -8.7726 39 1 0.3153 2.2808 -7.6227 40 1 1.8960 3.0921 -7.7292 41 1 3.9531 1.9396 -6.8640 42 1 3.5965 0.5675 -7.9412 43 1 5.0643 -0.0605 -5.9910 44 1 3.5329 -0.9693 -6.0313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457209341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:21 Heat of formation + Delta-G solvation = -134.112609 kcal Electronic energy + Delta-G solvation = -26348.173069 eV Core-core repulsion = 22686.008108 eV Total energy + Delta-G solvation = -3662.164961 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74653 -39.95871 -38.71359 -38.29286 -36.80946 -34.91377 -33.66856 -32.20792 -31.16007 -29.33324 -27.30018 -26.97375 -25.76400 -24.38132 -23.89224 -22.49428 -21.28786 -20.54555 -19.28636 -18.28907 -17.83359 -17.10421 -17.01379 -16.91496 -16.24975 -15.98538 -15.68347 -15.55346 -15.48173 -15.13321 -15.00092 -14.67851 -14.42104 -14.12663 -13.68820 -13.51447 -13.49164 -13.17793 -12.80487 -12.78701 -12.73666 -12.63024 -12.45191 -12.36242 -12.18057 -12.01151 -11.85324 -11.77987 -11.37808 -11.32210 -11.01807 -10.49215 -10.28195 -9.74044 -9.57700 -8.29922 -6.18669 1.26890 1.37023 1.42824 1.53664 1.55720 1.93711 2.32879 2.86858 3.02162 3.11152 3.71539 3.76238 3.85807 3.93808 4.10639 4.24615 4.28638 4.36476 4.46270 4.51010 4.56782 4.63067 4.65110 4.71980 4.77033 4.78586 4.84125 4.89984 4.90075 4.94549 5.07878 5.09856 5.19911 5.30109 5.38884 5.52527 5.54046 5.55981 5.87955 6.15296 6.30604 6.47008 6.94508 6.98405 7.28974 7.73900 8.68787 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.006039 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.832391 B = 4635.317046 C = 5358.107102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.069 3.931 4 C 0.091 3.909 5 N -0.402 5.402 6 C -0.339 4.339 7 H 0.081 0.919 8 C 0.016 3.984 9 N -0.889 5.889 10 Si 0.982 3.018 11 H -0.281 1.281 12 H -0.272 1.272 13 H -0.257 1.257 14 C 0.450 3.550 15 O -0.615 6.615 16 C 0.536 3.464 17 O -0.566 6.566 18 N -0.596 5.596 19 C 0.110 3.890 20 C -0.122 4.122 21 C -0.088 4.088 22 C -0.140 4.140 23 C -0.121 4.121 24 C 0.103 3.897 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.120 0.880 31 H 0.059 0.941 32 H 0.276 0.724 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.949 0.285 -10.573 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.008 4.008 4 C -0.031 4.031 5 N -0.119 5.119 6 C -0.467 4.467 7 H 0.099 0.901 8 C -0.187 4.187 9 N -0.526 5.526 10 Si 0.805 3.195 11 H -0.207 1.207 12 H -0.196 1.196 13 H -0.181 1.181 14 C 0.235 3.765 15 O -0.503 6.503 16 C 0.321 3.679 17 O -0.445 6.445 18 N -0.330 5.330 19 C -0.013 4.013 20 C -0.160 4.160 21 C -0.106 4.106 22 C -0.197 4.197 23 C -0.159 4.159 24 C -0.018 4.018 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.138 0.862 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.236 0.445 -10.383 16.054 hybrid contribution 0.480 -0.287 0.508 0.756 sum -11.756 0.157 -9.875 15.353 Atomic orbital electron populations 1.22892 0.80646 1.03278 1.00359 1.88122 1.20379 1.27411 1.95292 1.22735 0.93541 0.84865 0.99700 1.21965 0.92332 0.98423 0.90406 1.43223 1.53117 1.06425 1.09161 1.19294 1.38812 0.81091 1.07491 0.90137 1.26275 0.93770 1.04429 0.94276 1.69432 1.34653 1.38903 1.09602 0.85107 0.78785 0.77499 0.78113 1.20723 1.19636 1.18099 1.20408 0.81870 0.87028 0.87195 1.90608 1.59383 1.14434 1.85868 1.20225 0.85328 0.76994 0.85377 1.90640 1.22382 1.51070 1.80367 1.48172 1.07882 1.63782 1.13200 1.21941 0.80026 1.00223 0.99078 1.22044 1.02133 0.97491 0.94303 1.21137 0.95084 1.00432 0.93982 1.21766 1.01132 0.98685 0.98139 1.21973 0.96320 0.98848 0.98731 1.21865 1.01552 0.98249 0.80133 0.93221 0.93741 0.88997 0.91167 0.94728 0.86226 0.92238 0.91366 0.89298 0.92634 0.93176 0.88368 0.89342 0.91273 0.91553 0.93480 0.93141 0.87823 0.91063 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 11.01 113.37 1.25 1.92 16 2 O -0.39 -15.70 10.17 -148.98 -1.52 -17.21 16 3 C 0.07 2.74 6.28 71.98 0.45 3.19 16 4 C 0.09 4.48 5.46 86.38 0.47 4.95 16 5 N -0.40 -21.30 2.48 -637.89 -1.58 -22.89 16 6 C -0.34 -18.20 8.02 84.35 0.68 -17.52 16 7 H 0.08 4.30 7.48 -2.91 -0.02 4.27 16 8 C 0.02 0.86 5.38 85.14 0.46 1.31 16 9 N -0.89 -48.49 10.76 21.76 0.23 -48.25 16 10 Si 0.98 42.31 29.56 68.60 2.03 44.34 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 13 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 14 C 0.45 24.08 5.38 87.08 0.47 24.55 16 15 O -0.61 -34.67 16.66 -3.72 -0.06 -34.73 16 16 C 0.54 26.66 6.04 87.08 0.53 27.19 16 17 O -0.57 -31.46 16.54 -3.54 -0.06 -31.52 16 18 N -0.60 -22.59 2.97 -820.34 -2.43 -25.03 16 19 C 0.11 3.46 6.38 86.51 0.55 4.01 16 20 C -0.12 -2.88 5.38 30.82 0.17 -2.72 16 21 C -0.09 -1.64 2.68 -10.77 -0.03 -1.67 16 22 C -0.14 -2.04 9.19 71.98 0.66 -1.38 16 23 C -0.12 -2.65 5.36 30.67 0.16 -2.48 16 24 C 0.10 3.05 6.41 86.36 0.55 3.61 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.12 6.34 5.20 -2.38 -0.01 6.33 16 31 H 0.06 2.98 7.36 -2.39 -0.02 2.96 16 32 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.06 2.10 6.32 -2.39 -0.02 2.08 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 2.41 7.04 -2.39 -0.02 2.39 16 44 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -72.15 357.26 3.96 -68.19 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.98 Total: 22.13 kcal Atomic # 6 Polarization: 38.59 SS G_CDS: 6.37 Total: 44.96 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -3.78 Total: -96.16 kcal Atomic # 8 Polarization: -81.82 SS G_CDS: -1.64 Total: -83.46 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -72.15 3.96 -68.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.919 kcal (2) G-P(sol) polarization free energy of solvation -72.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds