Wall clock time and date at job start Tue Mar 31 2020 04:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34227 * 116.99956 * 2 1 4 4 O 1.20821 * 120.00321 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99867 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47076 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99992 * 270.00049 * 6 5 3 8 8 H 1.07999 * 119.99739 * 187.12063 * 7 6 5 9 9 C 1.38953 * 119.99610 * 7.11896 * 7 6 5 10 10 N 1.31408 * 120.00335 * 27.08419 * 9 7 6 11 11 Si 1.86800 * 119.99719 * 207.07737 * 9 7 6 12 12 H 1.48507 * 109.47135 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47032 * 119.99960 * 11 9 7 14 14 H 1.48492 * 109.47325 * 240.00402 * 11 9 7 15 15 C 1.34780 * 119.99837 * 89.99585 * 6 5 3 16 16 O 1.21291 * 120.00135 * 5.03751 * 15 6 5 17 17 C 1.50707 * 119.99684 * 185.02973 * 15 6 5 18 18 N 1.46894 * 109.46885 * 185.44416 * 17 15 6 19 19 C 1.48530 * 111.00207 * 52.60256 * 18 17 15 20 20 C 1.54942 * 103.22833 * 159.72071 * 19 18 17 21 21 C 1.54592 * 102.91907 * 322.58881 * 20 19 18 22 22 C 1.52998 * 110.30690 * 263.03723 * 21 20 19 23 23 C 1.53001 * 110.39489 * 140.91473 * 21 20 19 24 24 C 1.47900 * 111.00138 * 170.00173 * 18 17 15 25 25 H 1.08998 * 109.47317 * 59.99440 * 1 2 3 26 26 H 1.08995 * 109.47501 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47000 * 299.99583 * 1 2 3 28 28 H 1.08993 * 109.46997 * 60.00340 * 5 3 2 29 29 H 1.08998 * 109.46767 * 300.00058 * 5 3 2 30 30 H 0.96999 * 120.00145 * 182.66620 * 10 9 7 31 31 H 1.08994 * 109.46664 * 65.44308 * 17 15 6 32 32 H 1.08998 * 109.46858 * 305.43962 * 17 15 6 33 33 H 1.09007 * 110.67036 * 278.15264 * 19 18 17 34 34 H 1.09000 * 110.67108 * 41.28642 * 19 18 17 35 35 H 1.08996 * 110.72578 * 204.23138 * 20 19 18 36 36 H 1.09008 * 110.87460 * 81.01309 * 20 19 18 37 37 H 1.09006 * 109.47316 * 175.71575 * 22 21 20 38 38 H 1.09004 * 109.47454 * 295.71610 * 22 21 20 39 39 H 1.09001 * 109.47489 * 55.71806 * 22 21 20 40 40 H 1.09000 * 109.47082 * 304.23852 * 23 21 20 41 41 H 1.09001 * 109.46808 * 64.23496 * 23 21 20 42 42 H 1.08995 * 109.47569 * 184.23218 * 23 21 20 43 43 H 1.08999 * 109.91691 * 333.50400 * 24 18 17 44 44 H 1.09002 * 109.91673 * 94.60246 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1756 3.3378 -1.1868 8 1 4.5912 4.3347 -1.1899 9 6 3.8373 2.7223 -2.3857 10 7 2.8923 1.8096 -2.4121 11 14 4.7259 3.1924 -3.9602 12 1 5.7398 4.2361 -3.6636 13 1 5.3991 1.9953 -4.5249 14 1 3.7457 3.7191 -4.9434 15 6 4.1732 3.3252 1.1677 16 8 4.0911 2.7202 2.2158 17 6 4.4896 4.7987 1.1710 18 7 4.7798 5.2341 2.5436 19 6 5.8230 4.3781 3.1643 20 6 6.3608 5.2572 4.3212 21 6 6.3426 6.6782 3.7128 22 6 7.7281 7.0441 3.1767 23 6 5.8919 7.7002 4.7584 24 6 5.3244 6.6090 2.5596 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9557 0.7810 -0.8908 29 1 3.9563 0.7805 0.8891 30 1 2.6827 1.3522 -3.2414 31 1 3.6345 5.3546 0.7866 32 1 5.3581 4.9852 0.5394 33 1 5.3853 3.4580 3.5517 34 1 6.6151 4.1570 2.4489 35 1 7.3764 4.9648 4.5879 36 1 5.7041 5.2009 5.1895 37 1 7.6822 8.0153 2.6838 38 1 8.4372 7.0894 4.0033 39 1 8.0520 6.2885 2.4610 40 1 4.9211 7.4071 5.1582 41 1 6.6214 7.7382 5.5674 42 1 5.8121 8.6834 4.2948 43 1 5.8205 6.8229 1.6129 44 1 4.5199 7.3252 2.7271 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520606986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:49 Heat of formation + Delta-G solvation = -99.925816 kcal Electronic energy + Delta-G solvation = -25715.015958 eV Core-core repulsion = 22054.333448 eV Total energy + Delta-G solvation = -3660.682510 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.70431 -39.16163 -37.98259 -35.49302 -34.62330 -33.65338 -31.64511 -29.79923 -28.75742 -27.32826 -27.08427 -26.02345 -24.80214 -23.62375 -21.15003 -20.13360 -19.28737 -18.85057 -17.02384 -16.59547 -16.30683 -15.46175 -15.36403 -15.17494 -14.93424 -14.39816 -14.26708 -14.02454 -13.80802 -13.36315 -13.19734 -12.90276 -12.67602 -12.46804 -12.29189 -12.15978 -11.73418 -11.48284 -11.44852 -11.32982 -11.27195 -11.24771 -10.82613 -10.77944 -10.54142 -10.50442 -10.45037 -10.41272 -10.16418 -9.80199 -9.53710 -8.99167 -8.49962 -8.05019 -7.79818 -6.58236 -3.97022 3.03810 3.16846 3.20601 3.45667 3.70587 3.94435 4.08925 4.31665 4.64782 4.84140 4.86906 4.93515 5.03228 5.45402 5.52730 5.58487 5.68700 5.71455 5.72418 5.76196 5.79633 5.91594 5.95294 5.97426 6.00536 6.02821 6.10505 6.19750 6.21521 6.27315 6.33730 6.43075 6.44347 6.51997 6.65703 6.73509 7.27655 7.41138 7.43207 7.50871 7.57257 8.19428 8.94088 9.12353 9.34350 9.75235 10.49534 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.004799 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.548184 B = 5833.639359 C = 7113.186028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.485 3.515 4 O -0.501 6.501 5 C 0.154 3.846 6 N -0.430 5.430 7 C -0.335 4.335 8 H 0.105 0.895 9 C 0.039 3.961 10 N -0.862 5.862 11 Si 0.919 3.081 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.282 1.282 15 C 0.470 3.530 16 O -0.588 6.588 17 C 0.050 3.950 18 N -0.500 5.500 19 C 0.038 3.962 20 C -0.116 4.116 21 C -0.078 4.078 22 C -0.137 4.137 23 C -0.133 4.133 24 C 0.043 3.957 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.272 0.728 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.033 0.967 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.042 0.958 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 3.921 5.876 8.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.327 3.673 4 O -0.386 6.386 5 C 0.028 3.972 6 N -0.150 5.150 7 C -0.462 4.462 8 H 0.123 0.877 9 C -0.166 4.166 10 N -0.500 5.500 11 Si 0.745 3.255 12 H -0.192 1.192 13 H -0.204 1.204 14 H -0.208 1.208 15 C 0.259 3.741 16 O -0.474 6.474 17 C -0.081 4.081 18 N -0.224 5.224 19 C -0.089 4.089 20 C -0.154 4.154 21 C -0.079 4.079 22 C -0.195 4.195 23 C -0.191 4.191 24 C -0.085 4.085 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.140 0.860 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.459 3.804 6.492 8.747 hybrid contribution 0.631 0.385 -1.797 1.943 sum 5.090 4.189 4.696 8.093 Atomic orbital electron populations 1.22926 0.78755 1.01772 1.01629 1.86454 1.21645 1.35506 1.85684 1.23969 0.92259 0.80569 0.70545 1.90516 1.66525 1.36364 1.45184 1.20558 0.87217 0.85617 1.03785 1.43502 1.57527 1.08434 1.05525 1.19677 1.41569 1.02697 0.82239 0.87729 1.25125 0.94785 0.97172 0.99478 1.69935 1.24287 1.26905 1.28889 0.86013 0.79560 0.78698 0.81254 1.19226 1.20363 1.20837 1.19909 0.82347 0.88551 0.83264 1.90475 1.57495 1.68246 1.31154 1.21987 1.01721 0.95100 0.89251 1.64613 1.39414 1.01113 1.17295 1.23390 0.92279 0.98300 0.94951 1.22671 1.00523 0.93550 0.98668 1.21413 0.94903 0.96041 0.95537 1.21895 0.95684 1.01159 1.00717 1.21832 1.01243 0.98024 0.97962 1.23049 0.96407 0.92257 0.96828 0.92623 0.89637 0.93173 0.85998 0.89633 0.91699 0.88621 0.92843 0.87246 0.94870 0.91680 0.90960 0.92754 0.92712 0.92696 0.92169 0.92964 0.92942 0.93971 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.20 10.56 -39.25 -0.41 -8.61 16 3 C 0.49 12.13 6.08 36.01 0.22 12.35 16 4 O -0.50 -14.05 15.95 -18.75 -0.30 -14.34 16 5 C 0.15 3.70 5.29 -5.19 -0.03 3.67 16 6 N -0.43 -10.74 2.11 -116.09 -0.25 -10.98 16 7 C -0.33 -8.32 9.24 -14.93 -0.14 -8.46 16 8 H 0.11 2.46 6.32 -52.49 -0.33 2.13 16 9 C 0.04 0.96 4.86 -17.47 -0.08 0.88 16 10 N -0.86 -22.04 9.11 55.50 0.51 -21.54 16 11 Si 0.92 18.95 29.63 -169.99 -5.04 13.91 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 13 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 14 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 15 C 0.47 11.35 7.24 -10.98 -0.08 11.28 16 16 O -0.59 -15.08 13.32 5.55 0.07 -15.00 16 17 C 0.05 1.03 4.14 -4.98 -0.02 1.01 16 18 N -0.50 -9.32 5.23 -231.90 -1.21 -10.54 16 19 C 0.04 0.67 5.35 -1.90 -0.01 0.66 16 20 C -0.12 -1.60 6.16 -24.87 -0.15 -1.76 16 21 C -0.08 -0.99 0.97 -153.16 -0.15 -1.13 16 22 C -0.14 -1.51 8.21 37.16 0.30 -1.20 16 23 C -0.13 -1.44 8.24 37.16 0.31 -1.13 16 24 C 0.04 0.64 6.02 -2.76 -0.02 0.62 16 25 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 26 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.12 2.90 6.27 -51.93 -0.33 2.58 16 29 H 0.09 1.94 7.36 -51.93 -0.38 1.55 16 30 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 32 H 0.05 1.05 6.98 -51.93 -0.36 0.68 16 33 H 0.11 2.22 6.08 -51.93 -0.32 1.90 16 34 H 0.03 0.59 8.02 -51.93 -0.42 0.17 16 35 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 36 H 0.07 1.00 7.85 -51.92 -0.41 0.59 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.04 0.62 7.11 -51.93 -0.37 0.25 16 44 H 0.07 1.08 7.69 -51.93 -0.40 0.68 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -30.35 350.78 -7.20 -37.55 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.08 Total: 5.63 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 1.22 Total: 18.63 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.95 Total: -43.06 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.64 Total: -37.96 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.04 Total: 13.91 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.35 -7.20 -37.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520606986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.374 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds