Wall clock time and date at job start Tue Mar 31 2020 04:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34227 * 116.99956 * 2 1 4 4 O 1.20821 * 120.00321 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99867 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47076 * 180.02562 * 5 3 2 7 7 C 1.37098 * 119.99992 * 270.00049 * 6 5 3 8 8 H 1.07999 * 119.99739 * 187.12063 * 7 6 5 9 9 C 1.38953 * 119.99610 * 7.11896 * 7 6 5 10 10 N 1.31408 * 120.00335 * 27.08419 * 9 7 6 11 11 Si 1.86800 * 119.99719 * 207.07737 * 9 7 6 12 12 H 1.48507 * 109.47135 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47032 * 119.99960 * 11 9 7 14 14 H 1.48492 * 109.47325 * 240.00402 * 11 9 7 15 15 C 1.34780 * 119.99837 * 89.99585 * 6 5 3 16 16 O 1.21291 * 120.00135 * 5.03751 * 15 6 5 17 17 C 1.50707 * 119.99684 * 185.02973 * 15 6 5 18 18 N 1.46894 * 109.46885 * 185.44416 * 17 15 6 19 19 C 1.48530 * 111.00207 * 52.60256 * 18 17 15 20 20 C 1.54942 * 103.22833 * 159.72071 * 19 18 17 21 21 C 1.54592 * 102.91907 * 322.58881 * 20 19 18 22 22 C 1.52998 * 110.30690 * 263.03723 * 21 20 19 23 23 C 1.53001 * 110.39489 * 140.91473 * 21 20 19 24 24 C 1.47900 * 111.00138 * 170.00173 * 18 17 15 25 25 H 1.08998 * 109.47317 * 59.99440 * 1 2 3 26 26 H 1.08995 * 109.47501 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47000 * 299.99583 * 1 2 3 28 28 H 1.08993 * 109.46997 * 60.00340 * 5 3 2 29 29 H 1.08998 * 109.46767 * 300.00058 * 5 3 2 30 30 H 0.96999 * 120.00145 * 182.66620 * 10 9 7 31 31 H 1.08994 * 109.46664 * 65.44308 * 17 15 6 32 32 H 1.08998 * 109.46858 * 305.43962 * 17 15 6 33 33 H 1.09007 * 110.67036 * 278.15264 * 19 18 17 34 34 H 1.09000 * 110.67108 * 41.28642 * 19 18 17 35 35 H 1.08996 * 110.72578 * 204.23138 * 20 19 18 36 36 H 1.09008 * 110.87460 * 81.01309 * 20 19 18 37 37 H 1.09006 * 109.47316 * 175.71575 * 22 21 20 38 38 H 1.09004 * 109.47454 * 295.71610 * 22 21 20 39 39 H 1.09001 * 109.47489 * 55.71806 * 22 21 20 40 40 H 1.09000 * 109.47082 * 304.23852 * 23 21 20 41 41 H 1.09001 * 109.46808 * 64.23496 * 23 21 20 42 42 H 1.08995 * 109.47569 * 184.23218 * 23 21 20 43 43 H 1.08999 * 109.91691 * 333.50400 * 24 18 17 44 44 H 1.09002 * 109.91673 * 94.60246 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1756 3.3378 -1.1868 8 1 4.5912 4.3347 -1.1899 9 6 3.8373 2.7223 -2.3857 10 7 2.8923 1.8096 -2.4121 11 14 4.7259 3.1924 -3.9602 12 1 5.7398 4.2361 -3.6636 13 1 5.3991 1.9953 -4.5249 14 1 3.7457 3.7191 -4.9434 15 6 4.1732 3.3252 1.1677 16 8 4.0911 2.7202 2.2158 17 6 4.4896 4.7987 1.1710 18 7 4.7798 5.2341 2.5436 19 6 5.8230 4.3781 3.1643 20 6 6.3608 5.2572 4.3212 21 6 6.3426 6.6782 3.7128 22 6 7.7281 7.0441 3.1767 23 6 5.8919 7.7002 4.7584 24 6 5.3244 6.6090 2.5596 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9557 0.7810 -0.8908 29 1 3.9563 0.7805 0.8891 30 1 2.6827 1.3522 -3.2414 31 1 3.6345 5.3546 0.7866 32 1 5.3581 4.9852 0.5394 33 1 5.3853 3.4580 3.5517 34 1 6.6151 4.1570 2.4489 35 1 7.3764 4.9648 4.5879 36 1 5.7041 5.2009 5.1895 37 1 7.6822 8.0153 2.6838 38 1 8.4372 7.0894 4.0033 39 1 8.0520 6.2885 2.4610 40 1 4.9211 7.4071 5.1582 41 1 6.6214 7.7382 5.5674 42 1 5.8121 8.6834 4.2948 43 1 5.8205 6.8229 1.6129 44 1 4.5199 7.3252 2.7271 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520606986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:49 Heat of formation + Delta-G solvation = -118.794360 kcal Electronic energy + Delta-G solvation = -25715.834160 eV Core-core repulsion = 22054.333448 eV Total energy + Delta-G solvation = -3661.500712 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45522 -40.74756 -39.61272 -37.33438 -36.54230 -34.99366 -33.55494 -31.23243 -30.36950 -28.58735 -28.13693 -27.65337 -26.51058 -25.01504 -22.63805 -21.87848 -21.10409 -20.00588 -18.81222 -18.49287 -18.09841 -17.27239 -17.02877 -16.69245 -16.44786 -16.07742 -15.91840 -15.54424 -15.02879 -14.59080 -14.46980 -14.35118 -14.21441 -14.03130 -13.81925 -13.60081 -13.23302 -13.14369 -12.87869 -12.74111 -12.57474 -12.55874 -12.42380 -12.23810 -12.20648 -12.05312 -11.58677 -11.56635 -11.53145 -11.45997 -11.31926 -10.92468 -10.33836 -9.94884 -9.26914 -8.45177 -5.90412 1.37107 1.48171 1.60970 1.64810 1.77814 2.18398 2.33084 2.69698 3.06643 3.25065 3.64438 3.77381 3.97621 4.13834 4.26605 4.32771 4.34949 4.38087 4.40568 4.45359 4.49707 4.56847 4.60461 4.68490 4.72138 4.76348 4.82820 4.87829 4.92915 5.01394 5.13209 5.14831 5.25578 5.32777 5.39265 5.41625 5.54047 5.59412 5.68600 5.98930 6.10484 6.30535 7.03814 7.20294 7.45499 7.86284 8.63109 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.004799 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.548184 B = 5833.639359 C = 7113.186028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.488 3.512 4 O -0.540 6.540 5 C 0.152 3.848 6 N -0.440 5.440 7 C -0.356 4.356 8 H 0.113 0.887 9 C 0.001 3.999 10 N -0.889 5.889 11 Si 0.990 3.010 12 H -0.257 1.257 13 H -0.273 1.273 14 H -0.288 1.288 15 C 0.457 3.543 16 O -0.611 6.611 17 C 0.062 3.938 18 N -0.519 5.519 19 C 0.039 3.961 20 C -0.108 4.108 21 C -0.073 4.073 22 C -0.134 4.134 23 C -0.129 4.129 24 C 0.040 3.960 25 H 0.045 0.955 26 H 0.135 0.865 27 H 0.050 0.950 28 H 0.122 0.878 29 H 0.092 0.908 30 H 0.274 0.726 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.027 0.973 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 4.981 5.804 10.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.331 3.669 4 O -0.428 6.428 5 C 0.026 3.974 6 N -0.159 5.159 7 C -0.482 4.482 8 H 0.131 0.869 9 C -0.202 4.202 10 N -0.528 5.528 11 Si 0.814 3.186 12 H -0.181 1.181 13 H -0.198 1.198 14 H -0.214 1.214 15 C 0.247 3.753 16 O -0.498 6.498 17 C -0.069 4.069 18 N -0.244 5.244 19 C -0.088 4.088 20 C -0.146 4.146 21 C -0.074 4.074 22 C -0.191 4.191 23 C -0.186 4.186 24 C -0.088 4.088 25 H 0.064 0.936 26 H 0.153 0.847 27 H 0.069 0.931 28 H 0.139 0.861 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.749 4.852 6.430 9.896 hybrid contribution 0.120 -0.032 -1.744 1.749 sum 5.869 4.820 4.685 8.924 Atomic orbital electron populations 1.23294 0.76191 1.04882 1.01177 1.86422 1.24116 1.33745 1.84985 1.24085 0.92584 0.80788 0.69476 1.90484 1.67387 1.37718 1.47200 1.20600 0.87106 0.85787 1.03914 1.43733 1.57464 1.08748 1.05977 1.20036 1.42193 1.03451 0.82535 0.86934 1.26007 0.94840 0.97055 1.02280 1.70014 1.25146 1.27899 1.29694 0.84935 0.78200 0.78666 0.76820 1.18077 1.19791 1.21400 1.20569 0.81953 0.89942 0.82809 1.90456 1.58442 1.69097 1.31795 1.21805 1.01652 0.92499 0.90907 1.64574 1.40760 1.03110 1.15926 1.23251 0.91660 0.97795 0.96104 1.22639 1.01332 0.93621 0.96996 1.21426 0.95280 0.95706 0.94986 1.21870 0.94716 1.01332 1.01166 1.21796 1.01112 0.97861 0.97872 1.23181 0.97304 0.90000 0.98291 0.93627 0.84731 0.93129 0.86054 0.89020 0.91597 0.89510 0.91879 0.90574 0.95451 0.89637 0.91124 0.91609 0.90904 0.93805 0.93228 0.91241 0.91696 0.93526 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.51 16 2 O -0.38 -16.42 10.56 -51.39 -0.54 -16.96 16 3 C 0.49 24.88 6.08 71.24 0.43 25.31 16 4 O -0.54 -31.06 15.95 21.98 0.35 -30.71 16 5 C 0.15 7.48 5.29 85.64 0.45 7.93 16 6 N -0.44 -22.48 2.11 -639.58 -1.35 -23.83 16 7 C -0.36 -17.82 9.24 84.04 0.78 -17.05 16 8 H 0.11 5.30 6.32 -2.91 -0.02 5.28 16 9 C 0.00 0.03 4.86 84.93 0.41 0.44 16 10 N -0.89 -45.80 9.11 21.66 0.20 -45.60 16 11 Si 0.99 38.49 29.63 68.60 2.03 40.53 16 12 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 13 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 14 H -0.29 -11.39 7.11 99.48 0.71 -10.68 16 15 C 0.46 22.73 7.24 87.66 0.63 23.37 16 16 O -0.61 -32.47 13.32 -3.06 -0.04 -32.51 16 17 C 0.06 2.61 4.14 85.56 0.35 2.96 16 18 N -0.52 -19.48 5.23 -887.58 -4.64 -24.12 16 19 C 0.04 1.40 5.35 86.65 0.46 1.86 16 20 C -0.11 -2.83 6.16 31.80 0.20 -2.64 16 21 C -0.07 -1.68 0.97 -51.30 -0.05 -1.73 16 22 C -0.13 -2.54 8.21 71.98 0.59 -1.95 16 23 C -0.13 -2.43 8.24 71.98 0.59 -1.83 16 24 C 0.04 1.14 6.02 86.45 0.52 1.66 16 25 H 0.04 1.66 8.13 -2.39 -0.02 1.64 16 26 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 27 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 28 H 0.12 5.92 6.27 -2.39 -0.01 5.91 16 29 H 0.09 4.30 7.36 -2.39 -0.02 4.28 16 30 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 31 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 32 H 0.06 2.48 6.98 -2.39 -0.02 2.47 16 33 H 0.08 3.21 6.08 -2.38 -0.01 3.20 16 34 H 0.03 0.98 8.02 -2.39 -0.02 0.96 16 35 H 0.09 1.90 7.85 -2.39 -0.02 1.88 16 36 H 0.07 1.88 7.85 -2.38 -0.02 1.86 16 37 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 1.04 8.11 -2.39 -0.02 1.02 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.05 1.30 7.11 -2.39 -0.02 1.28 16 44 H 0.08 2.19 7.69 -2.39 -0.02 2.18 16 Total: -1.00 -66.50 350.78 3.56 -62.94 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.98 Total: 29.42 kcal Atomic # 6 Polarization: 34.28 SS G_CDS: 6.58 Total: 40.85 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -5.79 Total: -93.55 kcal Atomic # 8 Polarization: -79.95 SS G_CDS: -0.23 Total: -80.19 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.53 kcal Total: -66.50 3.56 -62.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520606986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.856 kcal (2) G-P(sol) polarization free energy of solvation -66.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds