Wall clock time and date at job start Tue Mar 31 2020 04:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99594 * 2 1 4 4 H 1.48502 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46918 * 299.99890 * 3 2 1 6 6 H 1.48494 * 109.47300 * 60.00077 * 3 2 1 7 7 C 1.38811 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99980 * 162.94342 * 7 2 1 9 9 N 1.36934 * 120.00152 * 342.93726 * 7 2 1 10 10 C 1.46966 * 120.59520 * 151.59163 * 9 7 2 11 11 C 1.53370 * 108.77369 * 124.84136 * 10 9 7 12 12 N 1.46957 * 108.63602 * 49.33914 * 11 10 9 13 13 C 1.34778 * 120.59343 * 124.74864 * 12 11 10 14 14 O 1.21279 * 120.00273 * 0.02562 * 13 12 11 15 15 C 1.50707 * 120.00109 * 179.97438 * 13 12 11 16 16 O 1.42905 * 109.46826 * 180.02562 * 15 13 12 17 17 C 1.42906 * 113.99321 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46396 * 180.02562 * 17 16 15 19 19 H 1.09002 * 109.87135 * 54.30293 * 18 17 16 20 20 C 1.54103 * 109.87289 * 175.30740 * 18 17 16 21 21 C 1.54809 * 104.18695 * 121.45511 * 20 18 17 22 22 C 1.55000 * 102.09463 * 20.88055 * 21 20 18 23 23 O 1.43744 * 109.88147 * 293.29228 * 18 17 16 24 24 C 1.46961 * 118.81627 * 304.77069 * 12 11 10 25 25 C 1.46998 * 120.61337 * 331.35432 * 9 7 2 26 26 H 0.97000 * 120.00125 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.60668 * 5.01416 * 10 9 7 28 28 H 1.08996 * 109.61207 * 244.67312 * 10 9 7 29 29 H 1.09005 * 109.61004 * 169.08800 * 11 10 9 30 30 H 1.09006 * 109.61179 * 289.41988 * 11 10 9 31 31 H 1.08993 * 109.47169 * 300.00413 * 15 13 12 32 32 H 1.08998 * 109.46611 * 60.00463 * 15 13 12 33 33 H 1.08994 * 109.46996 * 299.99923 * 17 16 15 34 34 H 1.09003 * 109.47073 * 60.00358 * 17 16 15 35 35 H 1.09000 * 110.48863 * 240.12488 * 20 18 17 36 36 H 1.08996 * 110.49014 * 2.78149 * 20 18 17 37 37 H 1.09002 * 110.90941 * 139.07656 * 21 20 18 38 38 H 1.09000 * 110.90586 * 262.64685 * 21 20 18 39 39 H 1.09000 * 110.61888 * 81.47467 * 22 21 20 40 40 H 1.08999 * 110.61855 * 204.31863 * 22 21 20 41 41 H 1.08996 * 109.61119 * 174.96993 * 24 12 11 42 42 H 1.09004 * 109.61097 * 295.31582 * 24 12 11 43 43 H 1.08994 * 109.46578 * 115.41662 * 25 9 7 44 44 H 1.09002 * 109.76119 * 355.07363 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0547 -1.2225 -0.2749 9 7 1.3709 -2.3621 0.3469 10 6 1.8111 -3.6523 -0.2022 11 6 2.1086 -4.6077 0.9601 12 7 0.9705 -4.5852 1.8895 13 6 0.3394 -5.7267 2.2288 14 8 0.7098 -6.7850 1.7665 15 6 -0.8260 -5.6883 3.1837 16 8 -1.3209 -7.0137 3.3847 17 6 -2.4335 -7.0892 4.2784 18 6 -2.8770 -8.5469 4.4183 19 1 -2.0300 -9.1649 4.7161 20 6 -3.9992 -8.6544 5.4689 21 6 -5.1864 -9.2761 4.6938 22 6 -4.4742 -9.9428 3.4893 23 8 -3.4103 -9.0176 3.1692 24 6 0.5326 -3.2958 2.4421 25 6 0.2351 -2.3403 1.2798 26 1 -0.4850 0.8400 0.0004 27 1 2.7130 -3.5079 -0.7972 28 1 1.0233 -4.0715 -0.8280 29 1 2.2478 -5.6184 0.5763 30 1 3.0126 -4.2850 1.4767 31 1 -0.5005 -5.2738 4.1377 32 1 -1.6165 -5.0641 2.7670 33 1 -2.1418 -6.7032 5.2551 34 1 -3.2574 -6.4946 3.8839 35 1 -3.6945 -9.3068 6.2872 36 1 -4.2651 -7.6668 5.8457 37 1 -5.7010 -10.0202 5.3018 38 1 -5.8788 -8.5041 4.3583 39 1 -4.0646 -10.9120 3.7739 40 1 -5.1600 -10.0492 2.6488 41 1 -0.3692 -3.4401 3.0370 42 1 1.3215 -2.8793 3.0685 43 1 -0.6671 -2.6647 0.7613 44 1 0.0930 -1.3301 1.6639 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525170874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:49 Heat of formation + Delta-G solvation = -114.666173 kcal Electronic energy + Delta-G solvation = -24555.148597 eV Core-core repulsion = 20893.826897 eV Total energy + Delta-G solvation = -3661.321700 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.16845 -40.43623 -38.78363 -38.00424 -35.63060 -33.39149 -33.14595 -32.08523 -31.65178 -29.55637 -28.07314 -26.04908 -25.33671 -24.34678 -22.99180 -22.32718 -21.88947 -20.23959 -18.91256 -18.23282 -17.61070 -17.45861 -17.28585 -16.76739 -16.70087 -16.40991 -16.18036 -15.55354 -15.46598 -15.16867 -15.08683 -14.89772 -14.50728 -14.04698 -13.91878 -13.36263 -13.21510 -13.11846 -12.79501 -12.69985 -12.55633 -12.47804 -12.29857 -12.21095 -12.07076 -12.02696 -11.90242 -11.66379 -11.55633 -10.79145 -10.73225 -10.65409 -10.59118 -9.86718 -8.66408 -7.89019 -5.37373 1.48063 1.51491 1.53681 1.61468 1.73773 2.51024 2.76087 2.96641 3.25944 3.51121 3.58259 3.63724 3.91992 3.97529 4.07705 4.16798 4.20256 4.22582 4.27321 4.28517 4.36444 4.43298 4.48369 4.56852 4.62588 4.64681 4.73453 4.80325 4.81275 4.91184 4.96705 5.04824 5.08152 5.20435 5.21459 5.50869 5.59560 5.65433 5.93387 6.12438 6.35620 6.44149 7.10673 7.12984 7.77715 8.31896 9.16699 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.029435 B = 0.002766 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.017110 B =10119.562049 C =10597.932740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.045 4.045 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.296 1.296 6 H -0.285 1.285 7 C -0.264 4.264 8 H 0.069 0.931 9 N -0.609 5.609 10 C 0.132 3.868 11 C 0.106 3.894 12 N -0.600 5.600 13 C 0.506 3.494 14 O -0.580 6.580 15 C 0.051 3.949 16 O -0.392 6.392 17 C 0.055 3.945 18 C 0.070 3.930 19 H 0.066 0.934 20 C -0.141 4.141 21 C -0.149 4.149 22 C 0.031 3.969 23 O -0.404 6.404 24 C 0.093 3.907 25 C 0.161 3.839 26 H 0.252 0.748 27 H 0.074 0.926 28 H 0.006 0.994 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.078 0.922 43 H -0.001 1.001 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 -13.848 15.324 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.223 1.223 6 H -0.212 1.212 7 C -0.394 4.394 8 H 0.086 0.914 9 N -0.333 5.333 10 C 0.006 3.994 11 C -0.018 4.018 12 N -0.333 5.333 13 C 0.295 3.705 14 O -0.460 6.460 15 C -0.028 4.028 16 O -0.311 6.311 17 C -0.021 4.021 18 C 0.012 3.988 19 H 0.084 0.916 20 C -0.179 4.179 21 C -0.186 4.186 22 C -0.045 4.045 23 O -0.324 6.324 24 C -0.030 4.030 25 C 0.035 3.965 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.024 0.976 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.017 0.983 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.737 -14.362 14.774 22.381 hybrid contribution 0.186 1.131 -0.411 1.218 sum -8.551 -13.231 14.364 21.319 Atomic orbital electron populations 1.70163 1.06604 1.26056 1.55019 1.25800 0.96049 1.01442 1.00833 0.85186 0.78561 0.79700 0.76802 1.19263 1.22323 1.21169 1.19540 0.92947 0.85559 1.41362 0.91367 1.44262 1.36768 1.02134 1.50110 1.21348 0.98082 0.86303 0.93699 1.22005 0.88228 1.00235 0.91291 1.48083 1.32574 1.07009 1.45677 1.20893 0.84249 0.83039 0.82295 1.90646 1.67489 1.31229 1.56617 1.22283 0.94779 0.86177 0.99519 1.88021 1.49587 1.26131 1.67410 1.23080 0.88210 0.96727 0.94098 1.22926 0.97057 0.93858 0.84942 0.91641 1.22942 0.93400 1.03937 0.97582 1.23137 0.97777 1.01188 0.96542 1.23842 0.88726 0.92935 0.99032 1.89051 1.52230 1.62115 1.28976 1.22565 1.01173 0.82450 0.96810 1.21051 0.88033 0.98470 0.88992 0.93845 0.90789 0.97606 0.90010 0.90588 0.86831 0.88788 0.88780 0.91922 0.88363 0.88581 0.87806 0.90281 0.91513 0.88545 0.87287 0.90416 0.98327 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.67 11.20 21.65 0.24 -52.43 16 2 C -0.05 -2.43 4.92 84.86 0.42 -2.01 16 3 Si 0.97 43.01 29.59 68.60 2.03 45.03 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.26 -13.99 9.57 84.03 0.80 -13.18 16 8 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 9 N -0.61 -29.80 2.97 -698.11 -2.08 -31.88 16 10 C 0.13 5.66 6.67 86.41 0.58 6.24 16 11 C 0.11 3.97 6.60 86.42 0.57 4.54 16 12 N -0.60 -21.55 2.95 -818.01 -2.41 -23.96 16 13 C 0.51 18.51 7.77 87.66 0.68 19.19 16 14 O -0.58 -26.09 15.90 16.01 0.25 -25.84 16 15 C 0.05 1.40 4.76 71.24 0.34 1.74 16 16 O -0.39 -12.12 9.86 -126.63 -1.25 -13.37 16 17 C 0.05 1.14 5.39 71.98 0.39 1.53 16 18 C 0.07 1.42 3.70 30.97 0.11 1.54 16 19 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 20 C -0.14 -1.60 6.64 31.58 0.21 -1.39 16 21 C -0.15 -1.63 7.16 31.90 0.23 -1.40 16 22 C 0.03 0.51 7.72 72.67 0.56 1.07 16 23 O -0.40 -10.74 11.19 -147.06 -1.65 -12.38 16 24 C 0.09 3.10 6.51 86.42 0.56 3.66 16 25 C 0.16 7.20 5.50 86.41 0.48 7.67 16 26 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 27 H 0.07 3.00 7.93 -2.38 -0.02 2.98 16 28 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 3.08 6.99 -2.38 -0.02 3.06 16 30 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 31 H 0.11 2.21 7.91 -2.39 -0.02 2.19 16 32 H 0.09 2.29 7.72 -2.39 -0.02 2.27 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.10 0.81 7.70 -2.39 -0.02 0.79 16 37 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.11 2.73 5.91 -2.39 -0.01 2.72 16 42 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 43 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.08 3.89 6.02 -2.39 -0.01 3.87 16 Total: -1.00 -74.60 351.99 2.05 -72.56 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.97 Total: 13.08 kcal Atomic # 6 Polarization: 23.26 SS G_CDS: 5.93 Total: 29.18 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -4.25 Total: -108.27 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -2.64 Total: -51.59 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -74.60 2.05 -72.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525170874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.108 kcal (2) G-P(sol) polarization free energy of solvation -74.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds